EWM22844.1, cds7825 (CDS) Nannochloropsis gaditana

Overview
NameEWM22844.1
Unique Namecds7825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:116312..116349 +
Alignment locationCM002474.1:116537..116596 +
Alignment locationCM002474.1:116687..116876 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22844.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100293g7.8350.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:116312..116349 +
CM002474.1supercontigCM002474.1:116537..116596 +
CM002474.1supercontigCM002474.1:116687..116876 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|585103483|gb|EWM22844.1| (hypothetical protein Naga_100293g7 [Nannochloropsis gaditana])

HSP 1 Score: 195.282 bits (495), Expect = 2.428e-63
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    1 MWNGRPARAMSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEGGSYLGLRLARGSRAAVKHVLIKSSQKKRHC 95
            MWNGRPARAMSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEGGSYLGLRLARGSRAAVKHVLIKSSQKKRHC
Sbjct:    1 MWNGRPARAMSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEGGSYLGLRLARGSRAAVKHVLIKSSQKKRHC 95          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|1072232048|gb|OEU16780.1| (hypothetical protein FRACYDRAFT_185477 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 60.077 bits (144), Expect = 1.219e-9
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    7 ARAMSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEG 65
            + + S  FGL  +AGM+ +DP RF RK +   +L  E+++++ F  +W+PFDWTQ++E 
Sbjct:   55 SSSFSYDFGLDTLAGMMDLDPIRFKRKSKFSNDL--EKKLISEFTSKWKPFDWTQQIED 111          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|1214712727|gb|OWZ23653.1| (hypothetical protein PHMEG_0001425 [Phytophthora megakarya])

HSP 1 Score: 62.7734 bits (151), Expect = 1.829e-9
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 0
Query:   14 FGLSVVAGMLGVDPPRFDRK-GQPRGNLGLERQVVAGFLREWQPFDWTQELEGG 66
            FG++VVAGM+ V PP++ R+ G  R ++  E++ V  FL++W+PFDWTQ L+GG
Sbjct:  793 FGVNVVAGMIDVTPPKYGRREGGNRRSVENEKRDVLAFLKDWEPFDWTQSLDGG 846          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|1111052253|ref|XP_019232874.1| (PREDICTED: CWF19-like protein 2 [Nicotiana attenuata] >gi|1102279580|gb|OIT27764.1| zinc finger ccch domain-containing protein 59 [Nicotiana attenuata])

HSP 1 Score: 60.8474 bits (146), Expect = 8.819e-9
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   10 MSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELE 64
             ++SFGL+VV GML + P    ++ + R ++  +RQ VA F+R+WQPFDWT++L+
Sbjct:  722 FNSSFGLNVVRGMLKLPPEDMHQQRRKRESVETQRQAVASFIRDWQPFDWTKQLD 776          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|1025042337|ref|XP_016445473.1| (PREDICTED: CWF19-like protein 2 [Nicotiana tabacum])

HSP 1 Score: 60.8474 bits (146), Expect = 8.827e-9
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   10 MSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELE 64
             ++SFGL+VV GML + P    ++ + R ++  +RQ VA F+R+WQPFDWT++L+
Sbjct:  734 FNSSFGLNVVRGMLKLPPEDMHQQRRKRESVETQRQAVASFIRDWQPFDWTKQLD 788          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|698519759|ref|XP_009804748.1| (PREDICTED: CWF19-like protein 2 [Nicotiana sylvestris])

HSP 1 Score: 60.8474 bits (146), Expect = 9.350e-9
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   10 MSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELE 64
             ++SFGL+VV GML + P    ++ + R ++  +RQ VA F+R+WQPFDWT++L+
Sbjct:  722 FNSSFGLNVVRGMLKLPPEDMHQQRRKRESVETQRQAVASFIRDWQPFDWTKQLD 776          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|1025304181|ref|XP_016500188.1| (PREDICTED: CWF19-like protein 2 [Nicotiana tabacum])

HSP 1 Score: 60.8474 bits (146), Expect = 9.442e-9
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   10 MSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELE 64
             ++SFGL+VV GML + P    ++ + R ++  +RQ VA F+R+WQPFDWT++L+
Sbjct:  722 FNSSFGLNVVRGMLKLPPEDMHQQRRKRESVETQRQAVASFIRDWQPFDWTKQLD 776          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|697150889|ref|XP_009629652.1| (PREDICTED: CWF19-like protein 2 [Nicotiana tomentosiformis])

HSP 1 Score: 60.8474 bits (146), Expect = 9.442e-9
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   10 MSTSFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELE 64
             ++SFGL+VV GML + P    ++ + R ++  +RQ VA F+R+WQPFDWT++L+
Sbjct:  722 FNSSFGLNVVRGMLKLPPEDMHQQRRKRESVETQRQAVASFIRDWQPFDWTKQLD 776          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|566025198|gb|ETI48109.1| (hypothetical protein F443_07802 [Phytophthora parasitica P1569])

HSP 1 Score: 60.4622 bits (145), Expect = 1.155e-8
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   13 SFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEGG 66
             FG++VVAGML V PP++ R+   R +L  E++ V  FL+ W+ FDWTQ L+GG
Sbjct:  817 DFGVNVVAGMLDVTPPKYGRREGHRRSLEDEKRDVLAFLKSWETFDWTQVLDGG 870          
BLAST of EWM22844.1 vs. NCBI_GenBank
Match: gi|568020479|gb|ETL94608.1| (hypothetical protein L917_07462 [Phytophthora parasitica])

HSP 1 Score: 60.4622 bits (145), Expect = 1.166e-8
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   13 SFGLSVVAGMLGVDPPRFDRKGQPRGNLGLERQVVAGFLREWQPFDWTQELEGG 66
             FG++VVAGML V PP++ R+   R +L  E++ V  FL+ W+ FDWTQ L+GG
Sbjct:  817 DFGVNVVAGMLDVTPPKYGRREGHRRSLEDEKRDVLAFLKSWETFDWTQVLDGG 870          
The following BLAST results are available for this feature:
BLAST of EWM22844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103483|gb|EWM22844.1|2.428e-63100.00hypothetical protein Naga_100293g7 [Nannochloropsi... [more]
gi|1072232048|gb|OEU16780.1|1.219e-940.68hypothetical protein FRACYDRAFT_185477 [Fragilario... [more]
gi|1214712727|gb|OWZ23653.1|1.829e-950.00hypothetical protein PHMEG_0001425 [Phytophthora m... [more]
gi|1111052253|ref|XP_019232874.1|8.819e-945.45PREDICTED: CWF19-like protein 2 [Nicotiana attenua... [more]
gi|1025042337|ref|XP_016445473.1|8.827e-945.45PREDICTED: CWF19-like protein 2 [Nicotiana tabacum... [more]
gi|698519759|ref|XP_009804748.1|9.350e-945.45PREDICTED: CWF19-like protein 2 [Nicotiana sylvest... [more]
gi|1025304181|ref|XP_016500188.1|9.442e-945.45PREDICTED: CWF19-like protein 2 [Nicotiana tabacum... [more]
gi|697150889|ref|XP_009629652.1|9.442e-945.45PREDICTED: CWF19-like protein 2 [Nicotiana tomento... [more]
gi|566025198|gb|ETI48109.1|1.155e-850.00hypothetical protein F443_07802 [Phytophthora para... [more]
gi|568020479|gb|ETL94608.1|1.166e-850.00hypothetical protein L917_07462 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7846rna7846Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications