EWM22852.1, cds7815 (CDS) Nannochloropsis gaditana

Overview
NameEWM22852.1
Unique Namecds7815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:83104..83709 +

Link to JBrowse

Properties
Property NameValue
Start range83104
Start range.
Protein idEWM22852.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100243g1.9375.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:83104..83709 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22852.1 vs. NCBI_GenBank
Match: gi|585103496|gb|EWM22852.1| (hypothetical protein Naga_100243g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 409.838 bits (1052), Expect = 9.935e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSAGVGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 201
            FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSAGVGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI
Sbjct:    1 FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSAGVGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 201          
BLAST of EWM22852.1 vs. NCBI_GenBank
Match: gi|553177540|ref|XP_005852474.1| (hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526] >gi|422296059|gb|EKU23358.1| hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 407.142 bits (1045), Expect = 8.555e-133
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0
Query:    1 FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSAGVGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 201
            FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKS G GEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI
Sbjct:  865 FKLFEDLANDPKTLTEILTTEDARLCPASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSPGGGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 1065          
BLAST of EWM22852.1 vs. NCBI_GenBank
Match: gi|585099464|gb|EWM20110.1| (hypothetical protein Naga_101752g1 [Nannochloropsis gaditana])

HSP 1 Score: 338.191 bits (866), Expect = 6.087e-117
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 0
Query:   32 MEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGGEVIATAKKSAGVGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 201
            MEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLD SVDDVVVELVQGLARGGEVIATAKKS G GEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI
Sbjct:    1 MEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDTSVDDVVVELVQGLARGGEVIATAKKSPGGGEKEDAPWTLDWTAAGLAAMEEDRRFGSSYFLYAHYKTYPGFFAFSTPFRVLI 170          
BLAST of EWM22852.1 vs. NCBI_GenBank
Match: gi|553180544|ref|XP_005853421.1| (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >gi|422295641|gb|EKU22940.1| hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 58.9214 bits (141), Expect = 9.623e-7
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 0
Query:    2 KLFEDLANDPKTLTEILTTEDARLCP-ASATMEGEGVVTLPSVDTTSGIKFYQDWHFMGGKDKEEEAERRQLLAQLGMGDLEKEKQWASVSLFSPYDLAPVILVEEGETYSIVLQGLDRSVDDVVVELVQGLARGG 136
            K+FE +A++ ++L + +   D R  P     +     +  PS+DT  GIKFYQ   F G                     L+K   W  V+L SP+++APV     G+ Y+++L+       DVVVEL QG  + G
Sbjct:  995 KIFEGVASNGESLLDTINKYDERDVPFCDVKVSKPSTLFFPSIDTAQGIKFYQGL-FTGNV-------------------LDKGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMK-GDVVVELFQGTEKKG 1109          
The following BLAST results are available for this feature:
BLAST of EWM22852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103496|gb|EWM22852.1|9.935e-145100.00hypothetical protein Naga_100243g1, partial [Nanno... [more]
gi|553177540|ref|XP_005852474.1|8.555e-13399.00hypothetical protein NGA_0689200 [Nannochloropsis ... [more]
gi|585099464|gb|EWM20110.1|6.087e-11798.24hypothetical protein Naga_101752g1 [Nannochloropsi... [more]
gi|553180544|ref|XP_005853421.1|9.623e-730.88hypothetical protein NGA_0438900, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7836rna7836Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications