rna7829, rna7829 (mRNA) Nannochloropsis gaditana

Overview
Namerna7829
Unique Namerna7829
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1910
Alignment locationCM002474.1:66614..67404 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100341g3.8450.mrna
Orig protein idgnl|cribi|Naga_100341g3.8450
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:66614..67404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100341g3gene7585Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7829rna7829-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22864.1cds7808Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7829 ID=rna7829|Name=rna7829|organism=Nannochloropsis gaditana|type=mRNA|length=1910bp
CTATCCGTCTTACAAAACACGGTCAAGCGTTTTTATGGATTGACGCGCAC
GAAAAGACACCCTGATAGCCTTGAATGGCGGGGCCCATCTCCACCACCCA
AAGCTGTCCACAGCCTCATCCCTTTTTCTCGCGCTTTCATCCGACACACC
AGCATACTTCCACAGACATAAGCTTTCATCTCAAGCATGGGTAAATCAAG
CAAATCCAAGGCGGACAAAACACTGGGTGCGGACGTGGTCGTCCAGAGCA
AAGGTGGCAGCGCCGAGGGCACGAAGGCGGTCGGCAAGAAAGGCAAGAAA
GCAGCGAAACCTGTCGAGCCCTCTTCCTCTTCCTCCAGCGACTCCTCGTC
CGACGAGGAAACTGCGCCGACCACCAATGGCACGGCGGGCAAAAAAGGGG
GCAAGGTTGTGGCCAAGCCGGTGGCAGCAAGCAGTGACTCGGACGATGAT
TCCTCCTCCTCCTCTTCCGAGGACGAGGCCCCTGCGCCCAAGAAGGCGAC
GCCAGCGGCCGGCAAGAAAGAGAAGCTGACCAAGAAGAAAGCAGCGCCTG
AATCGAGCGACAGCGACGATTCGGGTTCGGAGTCGGACGACAGCAGTGAT
GAGGAGGAGGCAGCGGTGAAGCCAGCCACTCCCGCCCGTGGGAAAACGAC
GGCTCCCTCGAAGAAGGCAGAGCCTGAGAGCAGCAGCTCCGAGAGCTCTG
ACAGCAGCGACGAGGAGGAGGAGGAGGTGGTGGCGGCGAAACCCAAGGCG
GCCGAGGAGTCGTCGGACGAGAGCAGCAGCGACAGTGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAAGGCGGCGACCAAGGCAGAGTCGAGCGAGA
GTGGCAGTGAATCTTCTTCTTCCGAGGAGGATGAGGACGAGGACGAGGAC
GAGGAGGAGGAGGAGACGGCGGTTGCCGCGTCCAAGAAACGGAAAGGCGG
GGAGGAGGGCGGGCAGGAGAAGAAGAAGAGCAAGGGTGCCGCAAGCCCCG
ACGAGGACCGGAAGGTATTCGTGCAAGGGCTGCCCTGGTCGGCGACAGAG
GAGGAAGTGCGGGCTTTCTTCCAAAAATGCGGGCCCATGACCAGCGTGGA
GCTCCCCTTGAAGGACGGGCGCTCCTCGGGAACCGCCTACATTGTCTTTG
GGGAGGAGGACGGGGTGGGGAAGGCGGTGGCGATGAACGAGGAGATCTTC
GGAGATAGCGGCCGTTGGGTCCGGGTTCGGAAATACGAGCCGACGGCGGC
GGGGAAGGACGGGGGGAAAGGGATGGGTTTTGCTCGGCCTCCGTCGGAGA
AACCGGAAGGATGCATGAGCGTTTTCATCGGAAATTTGTCGTGGAACATC
GACGAGGAGACGATTCGGTCGGCCTTTGCCAGCTGTGGGGAGGTGACGAG
CGTCCGTTTCGCCACGGACCGGGAGACCGGGGAATTTCGGGGATTCGGCC
ACGTGGATTTTGCCGACGAGACGGCTCCCGAGGCGGCGGTGCAGATGGCG
GGCACGCCGGTCATGGGCCGGGAGATCCGAGTCGATTATGCCCAGCCGCG
TCCTCCTCGCGAGGGTGGGTTTGGTGGGGGAGGAAGGGGGGGAGGTCGGG
GGGGAGGGCGGGGGGGAGGGCGGTCGTTTGGGGGGGGGGGAGGGGGCGGG
TTCGGAGGAGGGAGGGGCGGAGGGAGGGGCGGAGGACGTGGCGGAGGACG
AGGGGGGGGGCGAGACGGGGCGATCAACAAGAACCGAGGGAGCATTCAGG
CGTTTGCGGGGAACAAGAAGACATTCGACGACTGAGAAAATGGGCGTTGG
TGACGTGGTAGGCGCTGATCGGTGTGGGGGGAAGGGGGGAGAAAGGGAGG
GAAAGAGGGAGGGAGATGGGGCAGGTCGGACGTGGAGGAAAAGGGCGAGA
GCGGAACGGG
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protein sequence of rna7829

>rna7829-protein ID=rna7829-protein|Name=rna7829|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MKAVAREETRRGKAEGVGPRVARMLRGGRFGTRRAPGCKGLTDDKGRRLR
DARGGAAAAAATALLLVCGRGQKRRMSDGRTWRASRGTEDPEMGRTPPST
TGGKWKEIRMGRRLRF
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mRNA from alignment at CM002474.1:66614..67404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7829 ID=rna7829|Name=rna7829|organism=Nannochloropsis gaditana|type=mRNA|length=791bp|location=Sequence derived from alignment at CM002474.1:66614..67404+ (Nannochloropsis gaditana)
CAAGCGGCCAGGgcgtgaagggagggaggaagtgatgagcttggagggtg
gtgggaagGTGGGTGGGCAGAGGCCCCATGCCGCGGGGTTTATTATAAAT
AATGCTGCAGAAAGCAGGACCCCGGGAGAGGAGTGtggaagatgaaggcg
gTCGCCAGGGAGGAAACCCGCCGTGGAAAGGCGGAAGGCGTGGGGCCGCG
GGTGGCGAGGATGttgcgaggagggaggttcggCACCCGTCGCGCCCCCG
GCTGCAAGGGCCTGACAGATgacaaggggaggcggcTACGAGACGCACGG
GGAGgcgcagcagcggcagcagccacggcgctgctgctggtaTGCGGACG
ggggcagaagaggaggatgagcgacgggaggacgtggagggcctCGAGGG
GGACAGAGGACCCGGAGATGGGccgcacccctccctctaccacgggaggg
aaatggaaggagatCCGCATGGGCCGTCGCCTTAGGTTTTAGGGTTCGTA
GAAAGTGTGTAAGAGgaaaagacggggaaggcaggaggcgggtaGAGCTG
CGTCTGGAGCCTGTGTGTCGAAGAGAGTactgggagggaaagggaggaga
atagggaggaagaaaggagaaaggaccGAGAAAGATGGCGGGAATCTCTC
CCGCAGGTCACGGGAGGCAGATATATGGGACTAGAGAAAGTGTCAAAGGT
TTTTACTTTATTATTAATATACAAGTCTTCAAACTCGCGCACGCGTTTTA
CCCACCGAGCAAGCTTCCGCGCTGTTTCATGCACCGCTTCC
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Coding sequence (CDS) from alignment at CM002474.1:66614..67404+

>rna7829 ID=rna7829|Name=rna7829|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at CM002474.1:66614..67404+ (Nannochloropsis gaditana)
atgaaggcggTCGCCAGGGAGGAAACCCGCCGTGGAAAGGCGGAAGGCGT
GGGGCCGCGGGTGGCGAGGATGttgcgaggagggaggttcggCACCCGTC
GCGCCCCCGGCTGCAAGGGCCTGACAGATgacaaggggaggcggcTACGA
GACGCACGGGGAGgcgcagcagcggcagcagccacggcgctgctgctggt
aTGCGGACGggggcagaagaggaggatgagcgacgggaggacgtggaggg
cctCGAGGGGGACAGAGGACCCGGAGATGGGccgcacccctccctctacc
acgggagggaaatggaaggagatCCGCATGGGCCGTCGCCTTAGGTTTTA
G
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Synonyms
Publications