EWM22873.1, cds7799 (CDS) Nannochloropsis gaditana

Overview
NameEWM22873.1
Unique Namecds7799
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:49650..49664 +
Alignment locationCM002474.1:49829..49959 +
Alignment locationCM002474.1:50295..50414 +
Alignment locationCM002474.1:50475..50673 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22873.1
ProductBTB/Kelch-associated
Orig transcript idgnl|cribi|Naga_101555g2.4952.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:49650..49664 +
CM002474.1supercontigCM002474.1:49829..49959 +
CM002474.1supercontigCM002474.1:50295..50414 +
CM002474.1supercontigCM002474.1:50475..50673 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011705BACK
Homology
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|585103525|gb|EWM22873.1| (BTB/Kelch-associated [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 4.540e-110
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSRRDLWKCQDSIQGARAVSSDGLLAMPHHIKGGKAERRGKGLKEGRDRGLSGLMPGRNRVCPRHSCS 154
            MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSRRDLWKCQDSIQGARAVSSDGLLAMPHHIKGGKAERRGKGLKEGRDRGLSGLMPGRNRVCPRHSCS
Sbjct:    1 MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSRRDLWKCQDSIQGARAVSSDGLLAMPHHIKGGKAERRGKGLKEGRDRGLSGLMPGRNRVCPRHSCS 154          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|1173951141|gb|OQR99054.1| (regulator of chromosome condensation (RCC1)-like protein [Achlya hypogyna])

HSP 1 Score: 111.694 bits (278), Expect = 8.547e-26
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            PE AIELF AADMY ++RLK  CE V Q GL +ENA  LL  A++ +A  L+D+C+ FIVRHFD  TKTE F  LSRELILE LQ+R
Sbjct:  463 PEMAIELFAAADMYTLDRLKGLCELVVQKGLTVENAGVLLSAADDLHAGRLRDLCMHFIVRHFDTVTKTEGFQLLSRELILETLQNR 549          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|1173949033|gb|OQR97108.1| (regulator of chromosome condensation (RCC1) [Thraustotheca clavata])

HSP 1 Score: 110.923 bits (276), Expect = 2.102e-25
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            PE AIEL+ AADMY ++RLK  CE V Q GL++ENA  LL  A++  A  L+D+C+ FIVRHFD  TKTE F  LSRELILE LQ+R
Sbjct:  715 PEMAIELYAAADMYTLDRLKGLCEIVVQKGLSVENAGMLLSAADDLQASRLRDLCMHFIVRHFDTVTKTEGFQLLSRELILETLQNR 801          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|669148010|ref|XP_008609567.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530738545|gb|EQC36787.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 110.153 bits (274), Expect = 2.832e-25
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            PE AIEL+ AADMY ++RLK  CE V Q GL +ENA  LL  A+  +A  L+D+C+ FIVRHFD  TKTE F  LSRELILE LQ+R
Sbjct:  460 PELAIELYAAADMYTLDRLKGLCELVVQKGLTVENAGVLLSAADELHAGRLRDLCMHFIVRHFDTVTKTEGFQLLSRELILETLQNR 546          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|669148012|ref|XP_008609568.1| (hypothetical protein SDRG_05620 [Saprolegnia diclina VS20] >gi|530738544|gb|EQC36786.1| hypothetical protein SDRG_05620 [Saprolegnia diclina VS20])

HSP 1 Score: 110.153 bits (274), Expect = 2.899e-25
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            PE AIEL+ AADMY ++RLK  CE V Q GL +ENA  LL  A+  +A  L+D+C+ FIVRHFD  TKTE F  LSRELILE LQ+R
Sbjct:  466 PELAIELYAAADMYTLDRLKGLCELVVQKGLTVENAGVLLSAADELHAGRLRDLCMHFIVRHFDTVTKTEGFQLLSRELILETLQNR 552          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|635366944|emb|CCI44832.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 109.383 bits (272), Expect = 5.061e-25
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            P  AIEL+ AAD+Y ++RLK+ CE +    +N++NAAT LQ A+  N   L+ IC+SFIVRHFD  TKT+ FA LSR+LILE+LQ R
Sbjct:  459 PHIAIELYAAADLYTLDRLKKICEALVHRAINVDNAATFLQAADELNCDRLRHICVSFIVRHFDTVTKTQGFANLSRDLILEILQIR 545          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|635366945|emb|CCI44833.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 109.383 bits (272), Expect = 5.600e-25
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            P  AIEL+ AAD+Y ++RLK+ CE +    +N++NAAT LQ A+  N   L+ IC+SFIVRHFD  TKT+ FA LSR+LILE+LQ R
Sbjct:  457 PHIAIELYAAADLYTLDRLKKICEALVHRAINVDNAATFLQAADELNCDRLRHICVSFIVRHFDTVTKTQGFANLSRDLILEILQIR 543          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|813121722|ref|XP_012196477.1| (hypothetical protein SPRG_02515 [Saprolegnia parasitica CBS 223.65] >gi|641539001|gb|KDO32822.1| hypothetical protein SPRG_02515 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.612 bits (270), Expect = 8.697e-25
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0
Query:    3 PETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            PE AIEL+ AADMY ++RLK  CE V Q GL +ENA  LL  A+  +A  L+D+C+ FIVRHFD  TKTE F  LSR+LILE LQ+R
Sbjct:  446 PELAIELYAAADMYTLDRLKGLCELVVQKGLAVENAGVLLSAADELHATRLRDLCMHFIVRHFDTVTKTEGFQLLSRDLILETLQNR 532          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|673016792|ref|XP_008862357.1| (hypothetical protein H310_01110 [Aphanomyces invadans] >gi|574481560|gb|ETW08552.1| hypothetical protein H310_01110 [Aphanomyces invadans])

HSP 1 Score: 107.842 bits (268), Expect = 2.228e-24
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 0
Query:    1 MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            M  E AIEL+  ADMYG++RLK  CE + Q GL ++NA+ LLQ A+   A  L++IC+ FIVRHFD  TKTE F  LSR+LILE LQ+R
Sbjct:  459 MKAEMAIELYACADMYGLDRLKGLCEAMVQKGLVVDNASVLLQAADELQASRLREICMHFIVRHFDYVTKTEGFHMLSRDLILETLQNR 547          
BLAST of EWM22873.1 vs. NCBI_GenBank
Match: gi|698777560|ref|XP_009821824.1| (hypothetical protein H257_00711 [Aphanomyces astaci] >gi|574123949|gb|ETV89424.1| hypothetical protein H257_00711 [Aphanomyces astaci])

HSP 1 Score: 107.071 bits (266), Expect = 3.913e-24
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 0
Query:    1 MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNARALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSR 89
            M  E AIEL+  ADMYG++RLK  CE + Q GL ++NA  LLQ A+  +A  L++IC+ FI+RHFD  TKTE F  LSR+LILE LQ+R
Sbjct:  459 MTAEMAIELYACADMYGLDRLKGLCEVLVQKGLVVDNAGVLLQAADELHASRLREICMHFIIRHFDYVTKTEGFHMLSRDLILETLQNR 547          
The following BLAST results are available for this feature:
BLAST of EWM22873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103525|gb|EWM22873.1|4.540e-110100.00BTB/Kelch-associated [Nannochloropsis gaditana][more]
gi|1173951141|gb|OQR99054.1|8.547e-2662.07regulator of chromosome condensation (RCC1)-like p... [more]
gi|1173949033|gb|OQR97108.1|2.102e-2560.92regulator of chromosome condensation (RCC1) [Thrau... [more]
gi|669148010|ref|XP_008609567.1|2.832e-2560.92hypothetical protein, variant [Saprolegnia diclina... [more]
gi|669148012|ref|XP_008609568.1|2.899e-2560.92hypothetical protein SDRG_05620 [Saprolegnia dicli... [more]
gi|635366944|emb|CCI44832.1|5.061e-2556.32unnamed protein product [Albugo candida][more]
gi|635366945|emb|CCI44833.1|5.600e-2556.32unnamed protein product [Albugo candida][more]
gi|813121722|ref|XP_012196477.1|8.697e-2559.77hypothetical protein SPRG_02515 [Saprolegnia paras... [more]
gi|673016792|ref|XP_008862357.1|2.228e-2457.30hypothetical protein H310_01110 [Aphanomyces invad... [more]
gi|698777560|ref|XP_009821824.1|3.913e-2456.18hypothetical protein H257_00711 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7820rna7820Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications