rna7820, rna7820 (mRNA) Nannochloropsis gaditana

Overview
Namerna7820
Unique Namerna7820
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length450
Alignment locationCM002474.1:49650..50673 +

Link to JBrowse

Properties
Property NameValue
ProductBTB/Kelch-associated
Orig transcript idgnl|cribi|Naga_101555g2.4952.mrna
Orig protein idgnl|cribi|Naga_101555g2.4952
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:49650..50673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101555g2gene7575Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7820rna7820-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22873.1cds7799Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7820 ID=rna7820|Name=rna7820|organism=Nannochloropsis gaditana|type=mRNA|length=450bp
CCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCCCCCTCCTCCACAGG
GCCATGCGGACAATCACTGGAAATACGTGCCTCACCTGGTATCGGCCTTG
ACCGGGAAGAGCATCAAGCAAGTCACATGCGGCTCCTACCATACGGTACG
CTTCCCTCCTCTCCTTCCTCTCCCTTTTCCCCGGAAGCCCCCCTCACTGC
CGTCTCGGCAATGCCCCTCCCCCCACCATCGCTTTTACTTCTCGCGATGA
AACCTCGGCGTCGTCATTCTCCCTCCTGCTTGGTGCGCCAACTCGGACCC
CTTCTCCCCGTTGTCCTCCTCCCTCCCCTTTCTCTCCATCGCTGCCTCCC
TTTGCGCTCGAGCACTGTCTTGCAAGGAACCTGACGGCCGCGCCATAAGG
CCTGCGTGCCCTCAGCTGTCCCTGTCTGGGAATTCTAGGACCCTCCTGTC
back to top

protein sequence of rna7820

>rna7820-protein ID=rna7820-protein|Name=rna7820|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MLPETAIELFIAADMYGVERLKRACENVFQTGLNIENAATLLQTAENFNA
RALKDICLSFIVRHFDQATKTEAFAGLSRELILEVLQSRRDLWKCQDSIQ
GARAVSSDGLLAMPHHIKGGKAERRGKGLKEGRDRGLSGLMPGRNRVCPR
HSCS
back to top

mRNA from alignment at CM002474.1:49650..50673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7820 ID=rna7820|Name=rna7820|organism=Nannochloropsis gaditana|type=mRNA|length=1024bp|location=Sequence derived from alignment at CM002474.1:49650..50673+ (Nannochloropsis gaditana)
ATGCTTCCCGAGACGGTACCCTCcctggctccctccttcctccttccctc
cctccttccttcccccccgccctccctccctccctccccccgtttcTGTT
TCCTCTCTCACTCCATGCTGGAACCGGCGAATGCAAgctcagcctcctcc
tgccctcctcccctccttgttccCGACAGGCCATCGAGCTCTTCATCGCC
GCGGACATGTACGGGGTGGAACGGCTCAAGCGGGCCTGCGAAAACGTCTT
TCAAACCGGGCTCAATATCGAGAACGCGGCCACGCTCCTCCAGACCGCGG
AGAATTTCAAGTAAGAATGCATACATATTTGTGTTTATCACATgtccaca
cacacacatatacatatataaTGATACACCCTTGTTTTTTTGTCGACTTT
GCTTTTGATGCGTCACGGGTGGAGTGAGGATCTCGGTCGGGacgagggca
gggacgggaTGCTGGCTTTTCCGACGCTTTCAAGTTCAACGCGTCACTTA
TTTCGGGGAGGGGCGTATGGATGATTCGCATGGCACTGAATTGAAGGCCT
CTGTTACCTCGACCTGTCCTCCCATTCATgtgccaccgcccccctcccct
gcctccttccctcccttcttccctccctccctccctgtcttccagCGCCA
GGGCACTGAAAGACATCTGCCTGTCCTTCATCGTCCGGCATTTCGATCAG
GCCACAAAGACGGAGGCCTTTGCCGGCTTGTCCCGGGAGCTCATCCTCGA
GGTGCTCCAGAGCAGGTAGTCCCTGCCTGTCTAATCTCctttcgcccccc
cccctcccgcccatgtCGAGAAAAGACGGGACCTTTGGAAATGCCAAGAC
AGCATTCAGGGTGCAAGAGCGGTGTCTAGTGATGGCTTGCTGGCGATGCC
CCATCATAttaagggggggaaggcggagaggaggggcaaggggttgaagg
aaggaagggatcgGGGGCTATCCGGTTTAATGCCGGGAAGGAATAGGGTT
TGTCCACGACACTCATGTTCATAA
back to top

Coding sequence (CDS) from alignment at CM002474.1:49650..50673+

>rna7820 ID=rna7820|Name=rna7820|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002474.1:49650..50673+ (Nannochloropsis gaditana)
ATGCTTCCCGAGACGGCCATCGAGCTCTTCATCGCCGCGGACATGTACGG
GGTGGAACGGCTCAAGCGGGCCTGCGAAAACGTCTTTCAAACCGGGCTCA
ATATCGAGAACGCGGCCACGCTCCTCCAGACCGCGGAGAATTTCAACGCC
AGGGCACTGAAAGACATCTGCCTGTCCTTCATCGTCCGGCATTTCGATCA
GGCCACAAAGACGGAGGCCTTTGCCGGCTTGTCCCGGGAGCTCATCCTCG
AGGTGCTCCAGAGCAGACGGGACCTTTGGAAATGCCAAGACAGCATTCAG
GGTGCAAGAGCGGTGTCTAGTGATGGCTTGCTGGCGATGCCCCATCATAt
taagggggggaaggcggagaggaggggcaaggggttgaaggaaggaaggg
atcgGGGGCTATCCGGTTTAATGCCGGGAAGGAATAGGGTTTGTCCACGA
CACTCATGTTCATAAATGCTTCCCGAGACGGCCATCGAGCTCTTCATCGC
CGCGGACATGTACGGGGTGGAACGGCTCAAGCGGGCCTGCGAAAACGTCT
TTCAAACCGGGCTCAATATCGAGAACGCGGCCACGCTCCTCCAGACCGCG
GAGAATTTCAACGCCAGGGCACTGAAAGACATCTGCCTGTCCTTCATCGT
CCGGCATTTCGATCAGGCCACAAAGACGGAGGCCTTTGCCGGCTTGTCCC
GGGAGCTCATCCTCGAGGTGCTCCAGAGCAGACGGGACCTTTGGAAATGC
CAAGACAGCATTCAGGGTGCAAGAGCGGTGTCTAGTGATGGCTTGCTGGC
GATGCCCCATCATAttaagggggggaaggcggagaggaggggcaaggggt
tgaaggaaggaagggatcgGGGGCTATCCGGTTTAATGCCGGGAAGGAAT
AGGGTTTGTCCACGACACTCATGTTCATAAATGCTTCCCGAGACGGCCAT
CGAGCTCTTCATCGCCGCGGACATGTACGGGGTGGAACGGCTCAAGCGGG
CCTGCGAAAACGTCTTTCAAACCGGGCTCAATATCGAGAACGCGGCCACG
CTCCTCCAGACCGCGGAGAATTTCAACGCCAGGGCACTGAAAGACATCTG
CCTGTCCTTCATCGTCCGGCATTTCGATCAGGCCACAAAGACGGAGGCCT
TTGCCGGCTTGTCCCGGGAGCTCATCCTCGAGGTGCTCCAGAGCAGACGG
GACCTTTGGAAATGCCAAGACAGCATTCAGGGTGCAAGAGCGGTGTCTAG
TGATGGCTTGCTGGCGATGCCCCATCATAttaagggggggaaggcggaga
ggaggggcaaggggttgaaggaaggaagggatcgGGGGCTATCCGGTTTA
ATGCCGGGAAGGAATAGGGTTTGTCCACGACACTCATGTTCATAAATGCT
TCCCGAGACGGCCATCGAGCTCTTCATCGCCGCGGACATGTACGGGGTGG
AACGGCTCAAGCGGGCCTGCGAAAACGTCTTTCAAACCGGGCTCAATATC
GAGAACGCGGCCACGCTCCTCCAGACCGCGGAGAATTTCAACGCCAGGGC
ACTGAAAGACATCTGCCTGTCCTTCATCGTCCGGCATTTCGATCAGGCCA
CAAAGACGGAGGCCTTTGCCGGCTTGTCCCGGGAGCTCATCCTCGAGGTG
CTCCAGAGCAGACGGGACCTTTGGAAATGCCAAGACAGCATTCAGGGTGC
AAGAGCGGTGTCTAGTGATGGCTTGCTGGCGATGCCCCATCATAttaagg
gggggaaggcggagaggaggggcaaggggttgaaggaaggaagggatcgG
GGGCTATCCGGTTTAATGCCGGGAAGGAATAGGGTTTGTCCACGACACTC
ATGTTCATAA
back to top
Synonyms
Publications