EWM22883.1, cds7790 (CDS) Nannochloropsis gaditana

Overview
NameEWM22883.1
Unique Namecds7790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:34785..35183 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22883.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100788g3.10002.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:34785..35183 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Homology
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|585103540|gb|EWM22883.1| (hypothetical protein Naga_100788g3 [Nannochloropsis gaditana])

HSP 1 Score: 266.544 bits (680), Expect = 2.257e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132
            MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR
Sbjct:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1210524192|dbj|GAX16921.1| (DNA excision repair protein ERCC-3 [Fistulifera solaris])

HSP 1 Score: 73.9442 bits (180), Expect = 9.369e-13
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTG-SMAALSGGQGMAYVESSTGGKKRR 132
            M YS KRQQYL+DQGYT+K++ NL + A K+ A +  Y  S   PE +  LL   L      E+ + AE   ++R           +D      GA +A A V+RT G +MA +SGG G+ Y ESS+G  K+ 
Sbjct:  639 MFYSAKRQQYLIDQGYTFKIVTNLCERADKE-AVEKGYAYS--TPENDRDLLRTVLGSETELEKDQRAEDTAIRRT---------NAD------GAALADASVKRTAGLTMAQMSGGSGLRYRESSSGSSKKH 753          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1210515692|dbj|GAX25215.1| (DNA excision repair protein ERCC-3 [Fistulifera solaris])

HSP 1 Score: 73.559 bits (179), Expect = 1.229e-12
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTG-SMAALSGGQGMAYVESSTGGKKRR 132
            M YS KRQQYL+DQGYT+K++ NL + A K+ A +  Y  S   PE +  LL   L      E+ + AE   ++R           +D      GA +A A V+RT G +MA +SGG G+ Y ESS+G  K+ 
Sbjct:  639 MFYSAKRQQYLIDQGYTFKIVTNLCERADKE-AVEKGYAYS--TPENDRDLLRTVLGSETELEKDQRAEDTAIRRT---------NAD------GAALADASVKRTAGLTMAQMSGGTGLRYRESSSGSSKKH 753          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|169859418|ref|XP_001836349.1| (DNA helicase [Coprinopsis cinerea okayama7#130] >gi|116502638|gb|EAU85533.1| DNA helicase [Coprinopsis cinerea okayama7#130])

HSP 1 Score: 70.0922 bits (170), Expect = 1.870e-11
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNL--LDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            M YSTKRQQ+L+DQGY++KVI +L  L+D            ++    ++++ LL+  L+ AN   E EA  G      ++  E +  G+   + +GG G    GV+RTTGS+ ALSG Q M+YVE +    K+
Sbjct:  699 MFYSTKRQQFLIDQGYSFKVITHLDGLEDLPD---------LAYRTKDEQIELLSSVLL-AN---ESEADLG----SDVRASEGDLAGTVTSLDFGGPG-RFPGVQRTTGSLTALSGAQHMSYVEQNKSANKK 813          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1124118784|gb|OKY69064.1| (hypothetical protein PHLCEN_10860 [Phlebia centrifuga])

HSP 1 Score: 65.4698 bits (158), Expect = 6.668e-11
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            M YSTKRQQ+L+DQGY +KVI +L  D  +K    P+ +    + + E   L  +++ AN   E EA  G      ++ GE +  G+     +G        V RTTGS+AALSGGQ M+YVE +    K+
Sbjct:    1 MFYSTKRQQFLIDQGYAFKVITHL--DGLEKL---PELVYKTRDEQIE---LLASVLQAN---ESEADLG----SDVRAGEGDLAGTITSKDFGLPS-KFPSVHRTTGSLAALSGGQHMSYVEQNKSANKK 115          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|599361558|ref|XP_007393398.1| (hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa HHB-10118-sp] >gi|409048592|gb|EKM58070.1| hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa HHB-10118-sp])

HSP 1 Score: 68.5514 bits (166), Expect = 7.245e-11
Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNL---NPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            M YSTKRQQ+L+DQGY +KVI +L          D    MS+L     ++++ LL+  LM AN   E EA  G      ++  E +  G+     +G  G   A V+RTTGS+AALSGGQ M+YVE +    K+
Sbjct:  691 MFYSTKRQQFLIDQGYAFKVITHL----------DGMEDMSDLVYKTRDEQIELLSSVLM-AN---ESEADLG----TDVRANEGDLAGTITSKDFGMPGKFPA-VQRTTGSLAALSGGQHMSYVEQNKSANKK 805          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|595778818|ref|XP_007267952.1| (DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22] >gi|393217046|gb|EJD02536.1| DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22])

HSP 1 Score: 68.5514 bits (166), Expect = 7.346e-11
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALM----DANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            M YSTKRQQ+L+DQGY++KVI + LD  Q     D  Y       ++++ L++  L+    DA    ++ A EG +        ++  G   RG  +G + V   G +RTTGS+ ALSGG  M+YVE +    K+
Sbjct:  712 MFYSTKRQQFLIDQGYSFKVITH-LDGIQ--SLPDLAYRTR----DEQIELISSVLLANESDAELGNDVRAGEGDL--PGTVTAKDFGGPGQRGGAFGASNV--PGAKRTTGSLGALSGGAHMSYVEQNKSANKK 835          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1034735482|gb|OAV89587.1| (DNA excision repair protein ERCC-3 [Puccinia triticina 1-1 BBBD Race 1])

HSP 1 Score: 68.5514 bits (166), Expect = 7.502e-11
Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 0
Query:    3 YSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDR-GMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            +STKRQQ+L+DQGY +KVI +L     +     P  + S+   E+++ LL Q+++ AN   E +A  G  ++     G+E  G +DR G   G +G    GV+R  G+++ALSGGQ M+Y+E +    K+
Sbjct:  740 FSTKRQQFLIDQGYAFKVISHL-----QGLENLPDLVYSS--KEEQIELL-QSVLTAN---ESDAEIGTDVKNF---GDELRGPNDRSGKRIGQSGGTGPGVKRIVGNLSALSGGQSMSYIERNKSANKQ 855          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|646303381|gb|KDQ24529.1| (hypothetical protein PLEOSDRAFT_1047371 [Pleurotus ostreatus PC15])

HSP 1 Score: 67.781 bits (164), Expect = 1.283e-10
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
            M YSTKRQQ+L+DQGY +KVI + LD  Q     D   L+     EQ + LL+  L+ AN   E EA  G      I+ GE +  G+     +G     AA  +RTTGS+ ALSGGQ M+YVE +    K+
Sbjct:  617 MFYSTKRQQFLIDQGYAFKVITH-LDGLQ-----DLPELVYKSRDEQ-IELLSSVLL-AN---ESEADLG----SDIRAGEGDLAGTVTSKDFGPTKFTAA--QRTTGSLTALSGGQHMSYVEQNKSANKK 730          
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|219119406|ref|XP_002180464.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407937|gb|EEC47872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.0106 bits (162), Expect = 2.193e-10
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 0
Query:    1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132
            M YS KRQQYL+DQGYT+K++ NL + A  +   +     +   PE + +LL   L      E+ + AE   +++           +D      GA +A A  ++TT SMA LSGG G+ Y E S+ G  +R
Sbjct:  598 MFYSAKRQQYLIDQGYTFKIVTNLCEKADAEAIANG---CTFATPEDDRKLLRTVLTSETDLEKEQRAEDTAIRK---------NNTD------GAALADAASKKTT-SMAQLSGGTGLRYKEFSSSGLPKR 710          
The following BLAST results are available for this feature:
BLAST of EWM22883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103540|gb|EWM22883.1|2.257e-90100.00hypothetical protein Naga_100788g3 [Nannochloropsi... [more]
gi|1210524192|dbj|GAX16921.1|9.369e-1339.10DNA excision repair protein ERCC-3 [Fistulifera so... [more]
gi|1210515692|dbj|GAX25215.1|1.229e-1239.10DNA excision repair protein ERCC-3 [Fistulifera so... [more]
gi|169859418|ref|XP_001836349.1|1.870e-1137.59DNA helicase [Coprinopsis cinerea okayama7#130] >g... [more]
gi|1124118784|gb|OKY69064.1|6.668e-1138.17hypothetical protein PHLCEN_10860 [Phlebia centrif... [more]
gi|599361558|ref|XP_007393398.1|7.245e-1140.30hypothetical protein PHACADRAFT_252066 [Phanerocha... [more]
gi|595778818|ref|XP_007267952.1|7.346e-1136.30DNA repair helicase rad25 [Fomitiporia mediterrane... [more]
gi|1034735482|gb|OAV89587.1|7.502e-1136.92DNA excision repair protein ERCC-3 [Puccinia triti... [more]
gi|646303381|gb|KDQ24529.1|1.283e-1041.98hypothetical protein PLEOSDRAFT_1047371 [Pleurotus... [more]
gi|219119406|ref|XP_002180464.1|2.193e-1034.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7811rna7811Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications