EWM22883.1, cds7790 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|585103540|gb|EWM22883.1| (hypothetical protein Naga_100788g3 [Nannochloropsis gaditana]) HSP 1 Score: 266.544 bits (680), Expect = 2.257e-90 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132
MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR
Sbjct: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1210524192|dbj|GAX16921.1| (DNA excision repair protein ERCC-3 [Fistulifera solaris]) HSP 1 Score: 73.9442 bits (180), Expect = 9.369e-13 Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTG-SMAALSGGQGMAYVESSTGGKKRR 132
M YS KRQQYL+DQGYT+K++ NL + A K+ A + Y S PE + LL L E+ + AE ++R +D GA +A A V+RT G +MA +SGG G+ Y ESS+G K+
Sbjct: 639 MFYSAKRQQYLIDQGYTFKIVTNLCERADKE-AVEKGYAYS--TPENDRDLLRTVLGSETELEKDQRAEDTAIRRT---------NAD------GAALADASVKRTAGLTMAQMSGGSGLRYRESSSGSSKKH 753
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1210515692|dbj|GAX25215.1| (DNA excision repair protein ERCC-3 [Fistulifera solaris]) HSP 1 Score: 73.559 bits (179), Expect = 1.229e-12 Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTG-SMAALSGGQGMAYVESSTGGKKRR 132
M YS KRQQYL+DQGYT+K++ NL + A K+ A + Y S PE + LL L E+ + AE ++R +D GA +A A V+RT G +MA +SGG G+ Y ESS+G K+
Sbjct: 639 MFYSAKRQQYLIDQGYTFKIVTNLCERADKE-AVEKGYAYS--TPENDRDLLRTVLGSETELEKDQRAEDTAIRRT---------NAD------GAALADASVKRTAGLTMAQMSGGTGLRYRESSSGSSKKH 753
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|169859418|ref|XP_001836349.1| (DNA helicase [Coprinopsis cinerea okayama7#130] >gi|116502638|gb|EAU85533.1| DNA helicase [Coprinopsis cinerea okayama7#130]) HSP 1 Score: 70.0922 bits (170), Expect = 1.870e-11 Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNL--LDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
M YSTKRQQ+L+DQGY++KVI +L L+D ++ ++++ LL+ L+ AN E EA G ++ E + G+ + +GG G GV+RTTGS+ ALSG Q M+YVE + K+
Sbjct: 699 MFYSTKRQQFLIDQGYSFKVITHLDGLEDLPD---------LAYRTKDEQIELLSSVLL-AN---ESEADLG----SDVRASEGDLAGTVTSLDFGGPG-RFPGVQRTTGSLTALSGAQHMSYVEQNKSANKK 813
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1124118784|gb|OKY69064.1| (hypothetical protein PHLCEN_10860 [Phlebia centrifuga]) HSP 1 Score: 65.4698 bits (158), Expect = 6.668e-11 Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
M YSTKRQQ+L+DQGY +KVI +L D +K P+ + + + E L +++ AN E EA G ++ GE + G+ +G V RTTGS+AALSGGQ M+YVE + K+
Sbjct: 1 MFYSTKRQQFLIDQGYAFKVITHL--DGLEKL---PELVYKTRDEQIE---LLASVLQAN---ESEADLG----SDVRAGEGDLAGTITSKDFGLPS-KFPSVHRTTGSLAALSGGQHMSYVEQNKSANKK 115
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|599361558|ref|XP_007393398.1| (hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa HHB-10118-sp] >gi|409048592|gb|EKM58070.1| hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa HHB-10118-sp]) HSP 1 Score: 68.5514 bits (166), Expect = 7.245e-11 Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNL---NPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
M YSTKRQQ+L+DQGY +KVI +L D MS+L ++++ LL+ LM AN E EA G ++ E + G+ +G G A V+RTTGS+AALSGGQ M+YVE + K+
Sbjct: 691 MFYSTKRQQFLIDQGYAFKVITHL----------DGMEDMSDLVYKTRDEQIELLSSVLM-AN---ESEADLG----TDVRANEGDLAGTITSKDFGMPGKFPA-VQRTTGSLAALSGGQHMSYVEQNKSANKK 805
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|595778818|ref|XP_007267952.1| (DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22] >gi|393217046|gb|EJD02536.1| DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22]) HSP 1 Score: 68.5514 bits (166), Expect = 7.346e-11 Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALM----DANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
M YSTKRQQ+L+DQGY++KVI + LD Q D Y ++++ L++ L+ DA ++ A EG + ++ G RG +G + V G +RTTGS+ ALSGG M+YVE + K+
Sbjct: 712 MFYSTKRQQFLIDQGYSFKVITH-LDGIQ--SLPDLAYRTR----DEQIELISSVLLANESDAELGNDVRAGEGDL--PGTVTAKDFGGPGQRGGAFGASNV--PGAKRTTGSLGALSGGAHMSYVEQNKSANKK 835
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|1034735482|gb|OAV89587.1| (DNA excision repair protein ERCC-3 [Puccinia triticina 1-1 BBBD Race 1]) HSP 1 Score: 68.5514 bits (166), Expect = 7.502e-11 Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 3 YSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDR-GMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
+STKRQQ+L+DQGY +KVI +L + P + S+ E+++ LL Q+++ AN E +A G ++ G+E G +DR G G +G GV+R G+++ALSGGQ M+Y+E + K+
Sbjct: 740 FSTKRQQFLIDQGYAFKVISHL-----QGLENLPDLVYSS--KEEQIELL-QSVLTAN---ESDAEIGTDVKNF---GDELRGPNDRSGKRIGQSGGTGPGVKRIVGNLSALSGGQSMSYIERNKSANKQ 855
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|646303381|gb|KDQ24529.1| (hypothetical protein PLEOSDRAFT_1047371 [Pleurotus ostreatus PC15]) HSP 1 Score: 67.781 bits (164), Expect = 1.283e-10 Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKR 131
M YSTKRQQ+L+DQGY +KVI + LD Q D L+ EQ + LL+ L+ AN E EA G I+ GE + G+ +G AA +RTTGS+ ALSGGQ M+YVE + K+
Sbjct: 617 MFYSTKRQQFLIDQGYAFKVITH-LDGLQ-----DLPELVYKSRDEQ-IELLSSVLL-AN---ESEADLG----SDIRAGEGDLAGTVTSKDFGPTKFTAA--QRTTGSLTALSGGQHMSYVEQNKSANKK 730
BLAST of EWM22883.1 vs. NCBI_GenBank
Match: gi|219119406|ref|XP_002180464.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407937|gb|EEC47872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 67.0106 bits (162), Expect = 2.193e-10 Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 0
Query: 1 MRYSTKRQQYLVDQGYTYKVIPNLLDDAQKKCATDPKYLMSNLNPEQELRLLTQALMDANTYEEMEAAEGRVLQRAIQEGEEEDGGSDRGMVYGGAGVAAAGVRRTTGSMAALSGGQGMAYVESSTGGKKRR 132
M YS KRQQYL+DQGYT+K++ NL + A + + + PE + +LL L E+ + AE +++ +D GA +A A ++TT SMA LSGG G+ Y E S+ G +R
Sbjct: 598 MFYSAKRQQYLIDQGYTFKIVTNLCEKADAEAIANG---CTFATPEDDRKLLRTVLTSETDLEKEQRAEDTAIRK---------NNTD------GAALADAASKKTT-SMAQLSGGTGLRYKEFSSSGLPKR 710 The following BLAST results are available for this feature:
BLAST of EWM22883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|