rna7804, rna7804 (mRNA) Nannochloropsis gaditana

Overview
Namerna7804
Unique Namerna7804
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1570
Alignment locationCM002474.1:3398..5530 -

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Properties
Property NameValue
Productdna-directed rna polymerases and iii subunit rpabc4
Orig transcript idgnl|cribi|Naga_100160g2.4647.mrna
Orig protein idgnl|cribi|Naga_100160g2.4647
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:3398..5530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100160g2gene7561Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7804rna7804-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22887.1cds7783Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp
ATGGCGGGTCCCCAGAGCCCGGCGGGAACACGAGACGCACGAGAGGAAAG
CGGAGCGGTGAAAGGCCACGAAGACACCAGGGGAGAAAAGGGGAAAGGGA
GCTCTGGGCGCGGAGAAGGAGGACTGCAGGGGAACGGAGGTCTCTCGGTG
GCGGCGGTGGGAAATTCCCCTTCTCCCACCGCAGGCACGAAGCCGAAGAG
CCGGGCAGGACGATGCGATGGAGGCGACGGGCTACGGATGGGGGACCATA
TCGGGGGGGGGGATGGCGGCTTGTTACGAGCCGGGAATGCACAAGGCGAA
AAGGTGGACGAGACAGGAGACGTCTCCAAGGACAAGGGTTTGGAGGAGCC
AGGGGAGAAACAAGAACCCCTGACGGGGTGCGCTGAAATAGCGTCGGCCT
CTCCTTCCTCCTCTTCCCCTCCTTCCGGCACTATCTCGAGCTCACACACT
CCCCCTGCCGCTTCTCCTTCCTCACTGCCCTCTTCAGAAGGTCTTGACAC
CTCATCCACCTCCCTCCCCCGCCCCGTCCGCCGTCCGTCCCTCCGTCTTC
CGACTCCTTCCCCTTCTGTGCTTGATGAACTTACCCTCTCCCACTGCCTG
GATGCCTACACATCGCGTGAGACGCTCTCTTGTCCATACAAATGCGCATC
CTGCGGCGCAACTTCCTCATCCTGCTCCAAGCAATTGACATTACACCGGC
TGCCCAACGTTTTCATCTTTCATATGAAACGCTTTGACGCCTTCTCCGCC
CGCAAAATTGAGAAGTTCGTCCGGTACCCTCCCAAAGGTCTGAATATGGC
CCCTTACATGCACGCGTGGTGCAACGCGGAAATGAGGCGGGAGGGGACAA
CGGCGAAAAGGAAGGAAGAAAGTTTGGGGAATGAAAATGGTGGCGACAGG
CGTGGGAAAAGGGCTCGTGAAGGGGAAGGCTCCCCTCAAACGGGATGGTC
TCATGGACGAAGGGAGGGCATGAACGGCGGATCCGTGAGCCCTGAGATTC
TCTATGACCTGTTTGCAGTCGTAGAGCACATGGGGGCCTCCCTTCAGCAA
GGGCATTACAAAGCATTCGTACAGGAAGGGACAGAGGGAGGGAAGGAAGG
AGGGAGGGAGGGAGGGCGGGCACCGGCCTGGTGCGTTTGCAACGATACTT
GGGTCCAGGCGGTGAGCATTGAAAAGGTCTTGAACGCGCAAGCTTACCTC
CTGTTTTACATCCGACGGGGTTGGAGCCCAAAGGCAGGCTGAAGGTTACG
AAGGGATACGGAAAGGATAGATCGAGAGGGTGAGCTAGGTTGAAGATGAC
AAACTGTGCTGGCGATGCAGGAACGGAAGGTGTGTGCTTCTTTCGGTGGT
CTTTTGTGAGGGTGGAATGAGGATGGAGGGGGTCAAGTTGCTGAAGTAGT
GTACCATATTCGACAAACCAGATGTCACTATAGTGAGTGTCTGAAATAGT
GTGAAGCGTTCGACGGGCTAGATGTTACGTAAGGTTAGGAGCTGCAAATG
GAAGTGAATCGGATTACTCTAGGGTCTGTTGGGAAAACGAAGTTCAATCG
AATCGTCTGTGAAAGATAAT
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protein sequence of rna7804

>rna7804-protein ID=rna7804-protein|Name=rna7804|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQS
PVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTY
LCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGC
DGFSWMIAWL
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mRNA from alignment at CM002474.1:3398..5530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=mRNA|length=2133bp|location=Sequence derived from alignment at CM002474.1:3398..5530- (Nannochloropsis gaditana)
ATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTATTGTCGTGTC TTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGGGAAGTCTAA AGAGAAGGGAGACTGGCCTCATTAGTCGCTTCCATGTTGCAATTGCGAGT CGTTGGTTTCCTTTCTTTTATGATAGCAGTTTTGTAGTGCCCTCCTTCTC CCTTTGTGCACATCAAATTGTCATGCGAATCAACGATTTCAAATGATTTA TTGTCAAATGTTTTTTTGGATCTTTGACACTGCAAGCCAAGGTTGTTGAC AGCTCAGGTTTCTAAAAGCCCTAATTTATGGTCTTACATATGCATTTGTT AGAAATCGTGTAAATGTGATTTTTCAGAATTGAAAGGTAGCAGATAACAC ATAAGAAATGCTATATGTTGACGAATTCATTGCTAAATTTTTTTGAATAA TTTCATCCGATTATCTTACCACTGCGGGATTCATCACTTTCATCAACATC CATCTGAAGGCCAACACAATGTACCGCATCTCCCGCTATTCAAGTTTATC AGCCAAAGCGTACGACATTTAGACAAACCATATGCAACTATCTACCTTAA TAGTCTGTTGGTGACAATTATTGAAGCTGATATTCCGGAGAGGAAAGAGG GACGGTGCGGTTTGTCTCGTCGGTCTACACGCGGGTAGCTTTTACATCCC TTCCTTTATAATCACCGAGTCATATTTTTTGACACAATTTTTTCTCCCTT CAGTCATTAATCAAGGCATTGCACGTCTTAAACAATCAACGGGACAGTGA TCCGTGTGCAACTTTATCATCAGCACATTCCCATCGGCAATTATTCAGCA GTCCTGTATTCTGCCTGTTCGGGATTGTATCATAGTCAGGATCATATCCG GCAAGATTGCCCAGGTTTGAAGCAAAAACAACCATTTCAACCGCAGTTTT TGGCAACCCGATGCCATCGAAGCGGGACAAAGGCCTCGCATGCAAATTCG AAGTTCCTCTGTGGGACTGGCCCATATGAAGTGTTGTCGAGGCAACGTCC GGCTTGCGGCGTCCGAGGACGGTCAAATGTTTCCGTGAGGCAAAAGCCCG TTCAGTCTGTCAGGAGTCTTACGGATAGATACCAGAAAGAGTCACGAAAG GACCTTGCTCGCAGCATGAGATGAATATCACCTTGTCTTTGGGCGTTTTC CTCGTGCTGTGTGGTTCATTCGGGTTGGGAGGGTCGCGGCTGACGATGAC CACCTCTTTCTGTCAGAGGGGTACGGAGATGCTATGATAGCAGCCAGGCC CACACTATCTTCTATGCGTGTCCTCATGCATCTATGCTCTCTTAACACGT GCAAACCTGAAATCCATCACACTTGCGGGTGCTTACATATTATTTTCTTC CTACCGTCATCCAAGATAGACGTCTTTCACTCGTGCAATCACCTGTCAAG CTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCTTACGGCCA TTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACTACCGGCG TTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATTTATGCGGA GGTAAGTGGGAGGCATTGATTGTAGTGGTCATGTGAGGATGATTGGATCA CATCGAGAAGGGATACTTTAAGACGGTTCATCGCAATTCCTGCTGTCCGC AACATTCAACTCTGAGACTGGAGGTCTGTGCGTTAAAGCTTGACTGACTT GTACATCACTGACGCCTGAGAGCAAAGTATACTCCAGTGGCTGACTCCTA AGTATGTATCGCACATTCAACACGTCTCCCGTCTCTTATCTGTCTCTTAA CTCGGATAATACAGATTGTGGTGCCCAGAACGTGATAAAAAACAAGGATC CAATTCGTTGCCGGCAGTGCAACCATAGGATTATGTACAAAATGCGGACG AAGCGCGTGGTGCAATTTGAAGCCCGATAGGAAAATGGGAGAGGAAGTGA CAGACAATCAAGCTGCAAAGTTTAATTTTCTGGGGAGACGATATTTGTAC AGCAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGC GATGGCTTCAGTTGGATGATTGCCTGGCTTTAG
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Coding sequence (CDS) from alignment at CM002474.1:3398..5530-

>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002474.1:3398..5530- (Nannochloropsis gaditana)
CAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGCGA
TGGCTTCAGTTGGATGATTGCCTGGCTTTAGATTGTGGTGCCCAGAACGT
GATAAAAAACAAGGATCCAATTCGTTGCCGGCAGTGCAACCATAGGATTA
TGTACAAAATGCGGACGAAGCGCATAGACGTCTTTCACTCGTGCAATCAC
CTGTCAAGCTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCT
TACGGCCATTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGAC
TACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATT
TATGCGGAGATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTAT
TGTCGTGTCTTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGG
GAAGTCTAAAGAGAAGGGAGACTGGCCTCATTACAAAAATGCCTGAGTGA
GTGCGTGTGGACAGCTGCCTGGAGAGGATGCGATGGCTTCAGTTGGATGA
TTGCCTGGCTTTAGATTGTGGTGCCCAGAACGTGATAAAAAACAAGGATC
CAATTCGTTGCCGGCAGTGCAACCATAGGATTATGTACAAAATGCGGACG
AAGCGCATAGACGTCTTTCACTCGTGCAATCACCTGTCAAGCTCTGTAAA
CTGCATATGATGTCGGGCGCAGGCGGTGGACCTTACGGCCATTATGGCTC
CGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACTACCGGCGTTGGCGGGG
CCATGGCGCGGGAGCTAAGCGGCGTGACTTATTTATGCGGAGATGATACG
GAAAGTCCACATCGAAAAGCAGCTGACAAGTATTGTCGTGTCTTGTGTTC
GCGAATGTCATCCCTTGCTCATAAAAACAATGGGAAGTCTAAAGAGAAGG
GAGACTGGCCTCATTACAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTG
CCTGGAGAGGATGCGATGGCTTCAGTTGGATGATTGCCTGGCTTTAGATT
GTGGTGCCCAGAACGTGATAAAAAACAAGGATCCAATTCGTTGCCGGCAG
TGCAACCATAGGATTATGTACAAAATGCGGACGAAGCGCATAGACGTCTT
TCACTCGTGCAATCACCTGTCAAGCTCTGTAAACTGCATATGATGTCGGG
CGCAGGCGGTGGACCTTACGGCCATTATGGCTCCGGGGCAGGTGGAGGCG
TTGGTGAAGGTGGGACTACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTA
AGCGGCGTGACTTATTTATGCGGAGATGATACGGAAAGTCCACATCGAAA
AGCAGCTGACAAGTATTGTCGTGTCTTGTGTTCGCGAATGTCATCCCTTG
CTCATAAAAACAATGGGAAGTCTAAAGAGAAGGGAGACTGGCCTCATTAC
AAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGCGAT
GGCTTCAGTTGGATGATTGCCTGGCTTTAGATTGTGGTGCCCAGAACGTG
ATAAAAAACAAGGATCCAATTCGTTGCCGGCAGTGCAACCATAGGATTAT
GTACAAAATGCGGACGAAGCGCATAGACGTCTTTCACTCGTGCAATCACC
TGTCAAGCTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCTT
ACGGCCATTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACT
ACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATTT
ATGCGGAGATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTATT
GTCGTGTCTTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGGG
AAGTCTAAAGAGAAGGGAGACTGGCCTCATTA
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Synonyms
Publications