EWM22910.1, cds7763 (CDS) Nannochloropsis gaditana

Overview
NameEWM22910.1
Unique Namecds7763
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:375084..375288 +
Alignment locationCM002473.1:375700..375866 +

Link to JBrowse

Properties
Property NameValue
End range.
End range375866
Protein idEWM22910.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101154g2.2827.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:375084..375288 +
CM002473.1supercontigCM002473.1:375700..375866 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22910.1 vs. NCBI_GenBank
Match: gi|585103590|gb|EWM22910.1| (hypothetical protein Naga_101154g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 246.128 bits (627), Expect = 1.762e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MTRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGAEDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQVWFGGREGGREGGREGGGGG 124
            MTRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGAEDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQVWFGGREGGREGGREGGGGG
Sbjct:    1 MTRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGAEDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQVWFGGREGGREGGREGGGGG 124
[Close]
BLAST of EWM22910.1 vs. NCBI_GenBank
Match: gi|553191379|ref|XP_005855370.1| (hypothetical protein NGA_0118100 [Nannochloropsis gaditana CCMP526] >gi|422293688|gb|EKU20988.1| hypothetical protein NGA_0118100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 135.961 bits (341), Expect = 1.216e-39
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 
Query:    1 MTRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGA 70
            MTRIFMVTISLV FLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIG 
Sbjct:    1 MTRIFMVTISLVLFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGT 70
The following BLAST results are available for this feature:
BLAST of EWM22910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103590|gb|EWM22910.1|1.762e-82100.00hypothetical protein Naga_101154g2, partial [Nanno... [more]
gi|553191379|ref|XP_005855370.1|1.216e-3997.14hypothetical protein NGA_0118100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7784rna7784Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications