rna7779, rna7779 (mRNA) Nannochloropsis gaditana

Overview
Namerna7779
Unique Namerna7779
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length739
Alignment locationCM002473.1:361019..361530 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100702g1.2050.mrna
Orig protein idgnl|cribi|Naga_100702g1.2050
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:361019..361530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100702g1gene7535Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22914.1cds7758Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7779rna7779-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7779 ID=rna7779|Name=rna7779|organism=Nannochloropsis gaditana|type=mRNA|length=739bp
TCCCATCCCAGCTACATCCACGACCGCCTGGAAGATTTGGAGATCTGCTC
TATCACAGACGAGATGCAGCACGTCCTCACCCTGATCCATCGAAAGGTCC
CTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCT
CTCTCCTTTTCCCCTCTGTCTCCTCCCTCCACCCCCTTTGCCCGACTCTC
GCCACCCGTTCCCCGCTTGTTCTCTCTTAAATCTGAGCCAAATATATTCA
TGGATGTCGTCCAACGCCCAATGGCCCCTCCCTCCGTCCCTCCCTCCGTC
CCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCC
TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCGTCCCTCCGTCCCTC
CCTCCGTCCCGCCCTCCGTCCCTTCTCAGATAAGTTCACTCATGGCCGTC
CTCCGTAACAAGCACCACCTTTCCTTCTCCATGAATGCTGCCTCTATCAC
CCTCTATCAAGTCCTGCAGCAGACTCAGCGAGCGAATGGGCTTGGGTACC
AGCAAGAGGTATCCTTCCCTCCCTCCCCCCTTTCCCTTCGCTCGTTCTCT
TCGTTTTTCTACGCCACTCATGTGACGCGAGTCTCGCATCAAGATTGATG
AAAATTCATTATGAAGTTATATTGCGAAGATTCATTGTAAAGATTCACTC
AAGATATTCCCACGGGCTCCTACTCTGGGCGCTCATTCC
back to top

protein sequence of rna7779

>rna7779-protein ID=rna7779-protein|Name=rna7779|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MDDDLFGGIDDSVLLAAVAEAEKKLNGQDARTRPPAPEPSIYPLHPPPSS
STQNGTQTSFLPALARKPPTAPEWGGRSLAAPILRLDQGRHDFISHPSRE
EQGEVESHQWRQAQQWQGQQPSHSAWHAPGYGGRGVQGGGRRRRRRRGRR
RRRRRGR
back to top

mRNA from alignment at CM002473.1:361019..361530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7779 ID=rna7779|Name=rna7779|organism=Nannochloropsis gaditana|type=mRNA|length=512bp|location=Sequence derived from alignment at CM002473.1:361019..361530- (Nannochloropsis gaditana)
ATGGACGACGATTTGTTCGGAGGCATCGATGATAGTGTCCTATTGGCGGC
TGTGGCCGAAGCAGAAAAGAAATTGAATGGACAGGATGCTCGAACCAGGC
CCCCGGCGCCTGAACCGAGCATATACCCCCTCCACCCCCCCCCGTCATCA
TCGACACAAAATGGGACGCAAACAAGCTTCTTGCCAGCCCTGGCCAGGAA
ACCGCCCACGGCACCGGAATGGGGCGGACGTTCTCTGGCTGCGCCCATCC
TCCGGCTTGACCAGGGTCGTCATGACTTTATTTCGCACCCGTCTCGGGAG
GAGCAGGGAGAGGTAGAGTCGCATCAATGGCGGCAAGCACAGCAGTGGCA
GGGGCAGCAGCCGTCTCATTCAGCCTGGCACGCGCCTGGTTATGGGGGAA
GGGGGGTGCAGGGCGGGGGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGG
AGGAGGAGGAGGAGGGGGAGGTGAGAGGGGACGCTCCTGGGCGTGGGGTG
AAGCGGCATCGG
back to top

Coding sequence (CDS) from alignment at CM002473.1:361019..361530-

>rna7779 ID=rna7779|Name=rna7779|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002473.1:361019..361530- (Nannochloropsis gaditana)
ATGGACGACGATTTGTTCGGAGGCATCGATGATAGTGTCCTATTGGCGGC
TGTGGCCGAAGCAGAAAAGAAATTGAATGGACAGGATGCTCGAACCAGGC
CCCCGGCGCCTGAACCGAGCATATACCCCCTCCACCCCCCCCCGTCATCA
TCGACACAAAATGGGACGCAAACAAGCTTCTTGCCAGCCCTGGCCAGGAA
ACCGCCCACGGCACCGGAATGGGGCGGACGTTCTCTGGCTGCGCCCATCC
TCCGGCTTGACCAGGGTCGTCATGACTTTATTTCGCACCCGTCTCGGGAG
GAGCAGGGAGAGGTAGAGTCGCATCAATGGCGGCAAGCACAGCAGTGGCA
GGGGCAGCAGCCGTCTCATTCAGCCTGGCACGCGCCTGGTTATGGGGGAA
GGGGGGTGCAGGGCGGGGGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGG
AGGAGGAGGAGGAGGGGGAGGTGA
back to top
Synonyms
Publications