EWM22934.1, cds7738 (CDS) Nannochloropsis gaditana

Overview
NameEWM22934.1
Unique Namecds7738
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:288547..288728 +
Alignment locationCM002473.1:288814..288875 +
Alignment locationCM002473.1:289210..289424 +
Alignment locationCM002473.1:289885..290109 +
Alignment locationCM002473.1:290284..290487 +
Alignment locationCM002473.1:290613..290821 +
Alignment locationCM002473.1:291129..291431 +
Alignment locationCM002473.1:291674..291785 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22934.1
Productprotein of unknown function DUF4168
Orig transcript idgnl|cribi|Naga_100763g3.7661.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:288547..288728 +
CM002473.1supercontigCM002473.1:288814..288875 +
CM002473.1supercontigCM002473.1:289210..289424 +
CM002473.1supercontigCM002473.1:289885..290109 +
CM002473.1supercontigCM002473.1:290284..290487 +
CM002473.1supercontigCM002473.1:290613..290821 +
CM002473.1supercontigCM002473.1:291129..291431 +
CM002473.1supercontigCM002473.1:291674..291785 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025433DUF4168
Homology
BLAST of EWM22934.1 vs. NCBI_GenBank
Match: gi|585103653|gb|EWM22934.1| (protein of unknown function DUF4168 [Nannochloropsis gaditana])

HSP 1 Score: 1031.94 bits (2667), Expect = 0.000e+0
Identity = 503/503 (100.00%), Postives = 503/503 (100.00%), Query Frame = 0
Query:    1 MTNKGSSPNSFFPAGRLPLPSVLVFVLFLLSSLFSVQDVRATPSNKVKFVSLLANDAVLDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQACWGQGGCSIGPARKGIATTGERECLSLFFLIKGEAGTRRNGNLCMLYHLPAIECLSSPTLRKNSATEYTKKSAMLGVPSSIAGMAKGVAVNGKRGVSAIKPTLQTSSPSLVQRQHRRIRPLWQHQLRQLATETTHATPVPPPPPSHRNRVYPAVLLVTFAAVVYVIMTPDDEDIDSKILQAVQARLPAEVPPEELSTAETSKER 503
            MTNKGSSPNSFFPAGRLPLPSVLVFVLFLLSSLFSVQDVRATPSNKVKFVSLLANDAVLDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQACWGQGGCSIGPARKGIATTGERECLSLFFLIKGEAGTRRNGNLCMLYHLPAIECLSSPTLRKNSATEYTKKSAMLGVPSSIAGMAKGVAVNGKRGVSAIKPTLQTSSPSLVQRQHRRIRPLWQHQLRQLATETTHATPVPPPPPSHRNRVYPAVLLVTFAAVVYVIMTPDDEDIDSKILQAVQARLPAEVPPEELSTAETSKER
Sbjct:    1 MTNKGSSPNSFFPAGRLPLPSVLVFVLFLLSSLFSVQDVRATPSNKVKFVSLLANDAVLDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQACWGQGGCSIGPARKGIATTGERECLSLFFLIKGEAGTRRNGNLCMLYHLPAIECLSSPTLRKNSATEYTKKSAMLGVPSSIAGMAKGVAVNGKRGVSAIKPTLQTSSPSLVQRQHRRIRPLWQHQLRQLATETTHATPVPPPPPSHRNRVYPAVLLVTFAAVVYVIMTPDDEDIDSKILQAVQARLPAEVPPEELSTAETSKER 503          
BLAST of EWM22934.1 vs. NCBI_GenBank
Match: gi|397643180|gb|EJK75698.1| (hypothetical protein THAOC_02571 [Thalassiosira oceanica])

HSP 1 Score: 120.553 bits (301), Expect = 1.550e-26
Identity = 82/247 (33.20%), Postives = 125/247 (50.61%), Query Frame = 0
Query:   60 DRYAAAVAATEPLREDRDRAL--------RDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPG--ATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWR 296
            DRY+AA+A TE LR  RDR +        R   N L   W +T KK                RA + ++ QS++ +K+LG++ A FN I R +  D  L+ + S +   +         ++         +  Q  E +               HR+ LFA+S+ EIE LR++Q   LKQ   V+  PPG   +DP++ P+L+ +V+ +C +FPVQAEEI ++ G  + EFN +L +T+ NP FRWR
Sbjct:  128 DRYSAALAVTEGLRRVRDREITRAEEAKRRKKRNQLSTDW-ETAKK----------------RAESAYLLQSTKAVKALGMTAAQFNQIGREVISDPALKDRVSEQAYLYRVASTVNLDKVPLLDDPSSKKLLQSAEHK--------------KHRVQLFARSIHEIEDLRSDQMEALKQSLQVERFPPGFDISDPNVQPLLHPEVRAVCEKFPVQAEEIVKRYGLGSDEFNRMLEETKGNPIFRWR 343          
BLAST of EWM22934.1 vs. NCBI_GenBank
Match: gi|219110315|ref|XP_002176909.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411444|gb|EEC51372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.161 bits (287), Expect = 4.657e-25
Identity = 82/255 (32.16%), Postives = 127/255 (49.80%), Query Frame = 0
Query:   51 SLLANDAV-LDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVL----PHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGA--TDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQ 298
            SL +N  +  D+Y+A +AATE LR  RDR+L   +          T  ++ EA K              +V  S R++++LG++VA+FN + R+++ D  L++K   +   +         RMA          R    E+       P    +L      +L LF +S+ EIE LR++Q   LK+  HVD  P     +DP L P L+ KV+ +   FP+QAE+I +K+G ++ EFN +L  T  NP FRW+ Q
Sbjct:   71 SLFSNSELEYDKYSACLAATEGLRRIRDRSLAAEVQA-----AGGTGTDMKEAEK---------HINAQYVQNSGRVLRALGMTVAEFNALGRQISQDEQLKEKVMEQAYLY---------RMAATINM----DRANLIED-------PASAELLQAFRKDKLHLFCESMSEIEQLRSDQIERLKRSLHVDKFPANVNISDPGLLPFLSPKVRAVVEAFPLQAEDIVKKHGLQSDEFNQMLQATHSNPIFRWKIQ 291          
BLAST of EWM22934.1 vs. NCBI_GenBank
Match: gi|224010673|ref|XP_002294294.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970311|gb|EED88649.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.931 bits (289), Expect = 1.712e-24
Identity = 78/245 (31.84%), Postives = 128/245 (52.24%), Query Frame = 0
Query:   60 DRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAI----RRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRRPKKWSGEGEEEKSRMARRRRWWGGRGRQGGEEEGEEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPG--ATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQ 298
            DRYAAA+A TE LR  RD  +   +       +K+   N       G +A+ I    +RA +  + Q+++ +K+LG++V  FN I R +  D  L+++ S +   +         R+         +  Q  +                 +R+ +FA+S+ EIE LRA+Q   L+Q   V+  PPG   +DP++ P+L+ +V+ +C +FP+QAEEI ++ G E+ EFN +L +T+ NP FRWR Q
Sbjct:  183 DRYAAALAVTEGLRRVRDAEVERRMEE-----IKSGDNNSNRGSGGGGKAQQIEQAKKRAESAFLMQNTKAVKALGMTVTQFNQIGREVLADNALKERVSEQAYLYRIASTINLERVPLLSDPSSKKLLQSHKR----------------YRVQMFARSITEIEDLRADQMEALRQSLAVERFPPGFDLSDPNVQPLLHPEVRAVCEKFPLQAEEIVKRYGLESDEFNKMLEETKGNPIFRWRVQ 406          
BLAST of EWM22934.1 vs. NCBI_GenBank
Match: gi|298713767|emb|CBJ33734.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.1073 bits (196), Expect = 1.163e-13
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0
Query:  205 PHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQAC 300
            P +  LFAKSLREIEALR+ Q   L +E   + LP G   P +  I + +++  C  FPV AE I + NG E  EFN L  ++  N  +RW+   C
Sbjct:   97 PDKKMLFAKSLREIEALRSRQRRRLMKEVGSNDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRC 192          
The following BLAST results are available for this feature:
BLAST of EWM22934.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585103653|gb|EWM22934.1|0.000e+0100.00protein of unknown function DUF4168 [Nannochlorops... [more]
gi|397643180|gb|EJK75698.1|1.550e-2633.20hypothetical protein THAOC_02571 [Thalassiosira oc... [more]
gi|219110315|ref|XP_002176909.1|4.657e-2532.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224010673|ref|XP_002294294.1|1.712e-2431.84predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298713767|emb|CBJ33734.1|1.163e-1341.67conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7759rna7759Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications