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Properties
| Property Name | Value |
|---|
| Product | dna-binding protein smubp-2 |
| Orig transcript id | gnl|cribi|Naga_100184g6.5702.mrna |
| Orig protein id | gnl|cribi|Naga_100184g6.5702 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002473.1 | supercontig | CM002473.1:262436..265293 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7751 ID=rna7751|Name=rna7751|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp
ATGAACAACGATGAGGTATTCGCAGTTACGGCCGCGCGGGGTTTCTTGCC
CGTGCGTGATCCTCTAAGCCGCCTGACAGCAGGGACATCTCCCCTCTCTT
TAACCTCCCCACTTCATCTTTTCCATGTGCTTGAGGGCCTGGGGGACGAC
CTCCCTAAACTCCTTTTATGCGGAAGTACCACAGTGCGGGCTCAAATTGA
GTCCCGTCTGAGCGCTGTTGCCATGTTAACTCTACCTCCAGTACTGACTT
CGGATGAGGAGGAGCGGTTGTTTCTCCTTCTGTCTTTCGTGGCGCATGCC
TACGTGTGGGGGAGGACGCCTTCGACTTCCACGATCATGTCTGACTCCGA
GAAAGATCCAACTTCTGGAGGCGCTCTGCACGATTGTGATTGGATTCCAA
AGTCGCTGGCCGACCTTTGGATTGAGGTGGCACGACGACGGGGCCGACCC
CCGATCTTGACATACGCGACTTTCAACCTCTTTAATTGGCGGCGACTGGA
CGCGTCCAAGCCCGTGGAGCTAGGCAACATTGCGTGTCTGAACAACTTTT
TGGGCGGGCAGGATGAGGAATGGTTTCGGTGTGTTCATGTGGAGATTGAG
TCTCAAAGTGCAGGGGCCGTGGGGGCCATCCTCAGGTATGTGGAGCAGTC
TGAGGCCTTGAAGGGCAACCGCGGGGAAGGCGGTTCAGGCTGTAGCCTCG
ATCGGGGAAACGTCGATGGTGGTGAGGGTGAGAGGAGCAGTAATAACGAC
TGGGATGGCCTCCCACTCGCTGCACCTCTGGTGGAGGCTCTGGAAGAGAT
TCAGGCATGCCTGTGCACCATTCAGCGTGTCCTTCGACGCATGAACGAGG
CGTGCGACCCACACATTTACTATCATCGCGTGCGACTCTACATGAGCGGG
TGGCGGAATAATCCTAGCTTGCCAAAGGGCCTTCGATACGGGCCTGAGGG
TGAACACCGGCAATACTACGGGGAGACGGGGGCACAGTCTTGCATCCTCC
CGGCCTTTGACGCCTTCCTGGGTATCGAGCACGAGAAGGATAGCATGCGT
GAATATCTCCTTGATATGCGTGATTACATGCCACCCGCCCATCTCTCTTT
CCTCCTGCGTTTGGAAGCTCACCGGCCTCTTGTACGGGATGTGGTTAAAA
AACGAGGTTTATTGAGAGCAGCCTACAACGACGCTATCAAGGCGCTTGCC
AACTTTCGTGCTCTACATCTGCATGCCGCGGACACTTACATTCGCAAACC
TGCCCCCACCGAACAATTGGGGACAGGGGGGTCGGACTTCAGGGTATACC
TTCGCAAGCACAGAGAGGAGACGAAAATGCATGCGATAAGCCTCAAATCG
ACAGACTTAGGCCTCAAAGAAGGTTCAAAGATGGCGATAGAGCCACAATG
TAAAGAAGAAATGTAA back to topprotein sequence of rna7751 >rna7751-protein ID=rna7751-protein|Name=rna7751|organism=Nannochloropsis gaditana|type=polypeptide|length=775bp
MARSNREGAFSSLPSIEKWATQQRAALKEEREAERQEVTAALAQLTPQEC
QEKGVSLLHLNIAGISTGLYARKCISLGASTAVRKDGSLPAHGFGAGDEV
VLRSMKGSSSKGSGAGATGSERITGVIARTTGGRVDMVASTEDLDSDLLE
GWAAGGPGSGHLRLDMLSNESTHEKMLQAVEDVCNYPADGPAARIIDMCF
GGRACLGTLPPVPKTAPTQLPPDGPSYSGAVLNDAQRAAVTLGMSTEDVA
LIHGPPGTGKTTAVVELILQAVRRQQRRVLVCAPSNVAVDNIAERLALAP
PPPLPPSSSTAPPPPRTELSKRPVRIVRLGHPARLAPATQAYSLEALVEG
ADGTALVRDIRAELAALERRGVSPKTPQLREARRQWRSETRALRRELRTR
EARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWI
PIQRGGRVVLAGDHKQLAPTVKSGRAEALGLGVTLFDRLMREDGFGGPAG
GRACMLQVQYRMHADICAWASRAMYQGRLRADPSVAGRTLAGLGKGERED
GEEDGDEDMTEAVLLFLDTAGCGMEEEEGERPPSPPPSSPSSSPSRPRAP
KKTVRARSLLSSSRANEGEAQVVAAHVQALLRRTGLAPADVAVITPYNAQ
VERLRSLLHPQYPDLQVRSVDGFQGGEREAVVLSLVRSNLRGEVGFLRDD
RRLNVAVTRAKRHCCLVGDSETVGRHPFLASLLQHCEEVGQIRSAMEYLP
EWGGGGGGGGRGAEEGRESRERSTA back to topmRNA from alignment at CM002473.1:262436..265293+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7751 ID=rna7751|Name=rna7751|organism=Nannochloropsis gaditana|type=mRNA|length=2858bp|location=Sequence derived from alignment at CM002473.1:262436..265293+ (Nannochloropsis gaditana)
GTACAAACCTCAAGCCTTTAATGCCATTCTCTGAGGAGTGGCGTTAAGTA
ACAAGGACGAGGGGTATCGTGACAGCGTCAGGCATGAGGTTTTGATTGGT
GCGTGCGCCAACGAAAATTTCTCCTCAGGGTAAAGTGTCGAGCCTGCAAC
AGGTTGCCGCAATGGCGAGAAGTAACCGGGAGGGGGCTTTCTCATCGCTC
CCCTCGATAGAAAAGTGGGCCACGCAGCAACGTGCAGCATTAaaagagga
gcgagaggcAGAACGACAAGAAGTGACAGCGGCTTTGGCTCAGCTTACAC
CCCAAGAATGTCAGGAAAAAGGCGtttctcttctccatctGAACATCGCG
GGCATAAGCACGGGTCTATACGCGCGCAAATGCATCAGTCTGggggcctc
cacggccgtgCGAAAGGACGGAAGCTTGCCTGCGCATGGCTTTGGGGCCG
GTGACGAGGTCGTGCTGCGGTCCATGaaaggcagcagcagtaAAGGttcg
ggggcgggggccacTGGGAGTGAACGGATCACCGGTGTGATTGCGCGGAC
CACAGGCGGCAGAGTGGACATGGTTGCCTCCACAGAGGACTTGGACAGCG
ACCTTTTGGAGGGCTGGGCCGCAGGGGGCCCGGGTAGCGGGCATCTGCGC
CTGGACATGCTCTCGAACGAGAGCACGCACGAGAAGATGCTGCAAGCTGT
GGAGGACGTCTGCAACTACCCGGCCGACGGCCCTGCGGCCCGGATCATCG
ACATGTGTTTCGGCGGTCGTGCCTGCCTCgggaccctcccccccgttccc
AAGACTGCCCCTACCCAGCTCCCTCCCGACGGCCCTTCCTACTCGGGCGC
CGTCCTGAACGACGCTCAGCGGGCCGCCGTCACCTTAGGGATGAGCACTG
AGGACGTGGCCTTGATCCACGGCCCTCCCGGCACGGGCAAGACCACCGCC
GTGGTAGAGCTGATCCTGCAGGCGGTGCGCCGGCAGCAGCGCCGGGTCTT
GGTCTGTGCCCCGTCGAACGTGGCCGTCGACAACATCGCCGAGCGCTTAG
CCCtggcgccccctccaccgctccctccctcctcctccaccgcccccccg
cccccccgcacGGAGCTGTCCAAGCGGCCCGTCCGTATCGTCCGCCTCGG
TcaccccgcccgcctcgcccccgccacccagGCCTACTCCCTGGaggccc
tggtggagggagcggacggGACCGCCCTAGTCCGTGACATCCGGGCCGAG
CTCGCGGCCTTGGAGCGACGCGGGGTCTCCCCCAAGACACCGCAGCTGCG
AGAAGCACGGAGGCAATGGCGGAGCGAAACCAGGGCTTTGCGACGGGAGC
TCCGGACGCGGGAGGcgcgggtggtgggggaggtggtgtcgTCGCGGGAG
GTGGTCCTGTGCACCTgtgtgggggcgggggcccggGTCTTGCGGGAGGA
GCGCTTCGACCTGGTCGTGATCGACGAGGCCGCGCAAGCTCTGGAAGCCG
CCTGCTGGATCCCCATCCaacggggcgggcgggtggtgctggcggggGAC
CACAAGCAGCTCGCGCCCACGGTCAAGagcgggcgggcggaggccttggg
TCTGGGGGTGACGCTCTTCGACCGGCTcatgcgggaggacgggttcgggg
ggccggcgggggggcgggcctgcATGCTCCAGGTCCAGTACCGGATGCAT
GCGGACATATGTGCATGGGCGTCCCGGGCGATGTACCAAGGGCGCTTGCG
AGCCGACCCCTCCGTGGCCGGGAGGACGCTGGCGGGGCtggggaagggcg
agagggaggacggggaagaggacggggacgaggacatgaCGGAGGCAGTC
TTGTTGTTCCTGGACACGGCGGGgtgcgggatggaggaggaagaagggga
aagacccccctctcccccgccctcctccccctcctcctccccctcccggc
cacgCGCTCCCAAAAAAACCGTGCGCGCCCGCAGCCTCCTAAGCTCTTCT
CGGGCCaacgagggcgaggctcAGGTCGTGGCGGCCCATGTCCAGGCCTT
ACTCCGCCGCAccggcctcgcccccgccgacgTGGCCGTCATCACGCCCT
ACAACGCCCAGGTGGAGCGCCTCCGCTCGCTGTTGCACCCGCAGTACCCG
GATCTGCAGGTCCGATCCGTGGACGGCTTCCAAGGCGGGGAACGGGAGGC
AGTGGTGCTCTCCTTGGTCCGGAGCAATCTCCGAGGCGAGGTGGGCTTTC
TCCGGGACGACCGGCGGTTGAACGTGGCCGTTACTCGGGCGAAACGGCAC
TGTTGCCTGGTCGGGGACTCGGAAACGGTGGGGAGGCACcccttcctggc
ctccttGCTCCAGCATTgtgaggaggtggggcaGATCCGATCAGCCATGG
AGTACCTCCcggagtggggagggggcggaggagggggagggaggggcgcg
gaggagggaagggaatcCAGGGAGGTAGTCGGGGCGAAAAGGACGTCACG
GAGGGACGCGCCGGTgtcaaaaaatgcgcgaaggCATGCCAATGGatcag
gggggaaggcaaggtCGCGGCCGGGgtcccgggggaggggtgggaaggtt
ggggggggagacggtcggcaaggggaaggcggggagcaccggccacgggg
gggggcaggacgcCGAGCGCGGCtcgaaggagggcaggggcggcgagggg
gaggacgctttcgcccctgcctctcccccgccctccacccgtCCCGCCAG
CCCCGTGCCCGACAACCTCCTGGTCGCCCAGACCCTCGGCTTTTgcctcg
accccgccctcccccggcgcctggccctccccctcgacctgaGCGGTCGA
CAGCGTAA back to topCoding sequence (CDS) from alignment at CM002473.1:262436..265293+ >rna7751 ID=rna7751|Name=rna7751|organism=Nannochloropsis gaditana|type=CDS|length=4656bp|location=Sequence derived from alignment at CM002473.1:262436..265293+ (Nannochloropsis gaditana)
ATGGCGAGAAGTAACCGGGAGGGGGCTTTCTCATCGCTCCCCTCGATAGA
AAAGTGGGCCACGCAGCAACGTGCAGCATTAaaagaggagcgagaggcAG
AACGACAAGAAGTGACAGCGGCTTTGGCTCAGCTTACACCCCAAGAATGT
CAGGAAAAAGGCGtttctcttctccatctGAACATCGCGGGCATAAGCAC
GGGTCTATACGCGCGCAAATGCATCAGTCTGggggcctccacggccgtgC
GAAAGGACGGAAGCTTGCCTGCGCATGGCTTTGGGGCCGGTGACGAGGTC
GTGCTGCGGTCCATGaaaggcagcagcagtaAAGGttcgggggcgggggc
cacTGGGAGTGAACGGATCACCGGTGTGATTGCGCGGACCACAGGCGGCA
GAGTGGACATGGTTGCCTCCACAGAGGACTTGGACAGCGACCTTTTGGAG
GGCTGGGCCGCAGGGGGCCCGGGTAGCGGGCATCTGCGCCTGGACATGCT
CTCGAACGAGAGCACGCACGAGAAGATGCTGCAAGCTGTGGAGGACGTCT
GCAACTACCCGGCCGACGGCCCTGCGGCCCGGATCATCGACATGTGTTTC
GGCGGTCGTGCCTGCCTCgggaccctcccccccgttcccAAGACTGCCCC
TACCCAGCTCCCTCCCGACGGCCCTTCCTACTCGGGCGCCGTCCTGAACG
ACGCTCAGCGGGCCGCCGTCACCTTAGGGATGAGCACTGAGGACGTGGCC
TTGATCCACGGCCCTCCCGGCACGGGCAAGACCACCGCCGTGGTAGAGCT
GATCCTGCAGGCGGTGCGCCGGCAGCAGCGCCGGGTCTTGGTCTGTGCCC
CGTCGAACGTGGCCGTCGACAACATCGCCGAGCGCTTAGCCCtggcgccc
cctccaccgctccctccctcctcctccaccgcccccccgcccccccgcac
GGAGCTGTCCAAGCGGCCCGTCCGTATCGTCCGCCTCGGTcaccccgccc
gcctcgcccccgccacccagGCCTACTCCCTGGaggccctggtggaggga
gcggacggGACCGCCCTAGTCCGTGACATCCGGGCCGAGCTCGCGGCCTT
GGAGCGACGCGGGGTCTCCCCCAAGACACCGCAGCTGCGAGAAGCACGGA
GGCAATGGCGGAGCGAAACCAGGGCTTTGCGACGGGAGCTCCGGACGCGG
GAGGcgcgggtggtgggggaggtggtgtcgTCGCGGGAGGTGGTCCTGTG
CACCTgtgtgggggcgggggcccggGTCTTGCGGGAGGAGCGCTTCGACC
TGGTCGTGATCGACGAGGCCGCGCAAGCTCTGGAAGCCGCCTGCTGGATC
CCCATCCaacggggcgggcgggtggtgctggcggggGACCACAAGCAGCT
CGCGCCCACGGTCAAGagcgggcgggcggaggccttgggTCTGGGGGTGA
CGCTCTTCGACCGGCTcatgcgggaggacgggttcggggggccggcgggg
gggcgggcctgcATGCTCCAGGTCCAGTACCGGATGCATGCGGACATATG
TGCATGGGCGTCCCGGGCGATGTACCAAGGGCGCTTGCGAGCCGACCCCT
CCGTGGCCGGGAGGACGCTGGCGGGGCtggggaagggcgagagggaggac
ggggaagaggacggggacgaggacatgaCGGAGGCAGTCTTGTTGTTCCT
GGACACGGCGGGgtgcgggatggaggaggaagaaggggaaagacccccct
ctcccccgccctcctccccctcctcctccccctcccggccacgCGCTCCC
AAAAAAACCGTGCGCGCCCGCAGCCTCCTAAGCTCTTCTCGGGCCaacga
gggcgaggctcAGGTCGTGGCGGCCCATGTCCAGGCCTTACTCCGCCGCA
ccggcctcgcccccgccgacgTGGCCGTCATCACGCCCTACAACGCCCAG
GTGGAGCGCCTCCGCTCGCTGTTGCACCCGCAGTACCCGGATCTGCAGGT
CCGATCCGTGGACGGCTTCCAAGGCGGGGAACGGGAGGCAGTGGTGCTCT
CCTTGGTCCGGAGCAATCTCCGAGGCGAGGTGGGCTTTCTCCGGGACGAC
CGGCGGTTGAACGTGGCCGTTACTCGGGCGAAACGGCACTGTTGCCTGGT
CGGGGACTCGGAAACGGTGGGGAGGCACcccttcctggcctccttGCTCC
AGCATTgtgaggaggtggggcaGATCCGATCAGCCATGGAGTACCTCCcg
gagtggggagggggcggaggagggggagggaggggcgcggaggagggaag
ggaatcCAGGGAGCGGTCGACAGCGTAAATGGCGAGAAGTAACCGGGAGG
GGGCTTTCTCATCGCTCCCCTCGATAGAAAAGTGGGCCACGCAGCAACGT
GCAGCATTAaaagaggagcgagaggcAGAACGACAAGAAGTGACAGCGGC
TTTGGCTCAGCTTACACCCCAAGAATGTCAGGAAAAAGGCGtttctcttc
tccatctGAACATCGCGGGCATAAGCACGGGTCTATACGCGCGCAAATGC
ATCAGTCTGggggcctccacggccgtgCGAAAGGACGGAAGCTTGCCTGC
GCATGGCTTTGGGGCCGGTGACGAGGTCGTGCTGCGGTCCATGaaaggca
gcagcagtaAAGGttcgggggcgggggccacTGGGAGTGAACGGATCACC
GGTGTGATTGCGCGGACCACAGGCGGCAGAGTGGACATGGTTGCCTCCAC
AGAGGACTTGGACAGCGACCTTTTGGAGGGCTGGGCCGCAGGGGGCCCGG
GTAGCGGGCATCTGCGCCTGGACATGCTCTCGAACGAGAGCACGCACGAG
AAGATGCTGCAAGCTGTGGAGGACGTCTGCAACTACCCGGCCGACGGCCC
TGCGGCCCGGATCATCGACATGTGTTTCGGCGGTCGTGCCTGCCTCggga
ccctcccccccgttcccAAGACTGCCCCTACCCAGCTCCCTCCCGACGGC
CCTTCCTACTCGGGCGCCGTCCTGAACGACGCTCAGCGGGCCGCCGTCAC
CTTAGGGATGAGCACTGAGGACGTGGCCTTGATCCACGGCCCTCCCGGCA
CGGGCAAGACCACCGCCGTGGTAGAGCTGATCCTGCAGGCGGTGCGCCGG
CAGCAGCGCCGGGTCTTGGTCTGTGCCCCGTCGAACGTGGCCGTCGACAA
CATCGCCGAGCGCTTAGCCCtggcgccccctccaccgctccctccctcct
cctccaccgcccccccgcccccccgcacGGAGCTGTCCAAGCGGCCCGTC
CGTATCGTCCGCCTCGGTcaccccgcccgcctcgcccccgccacccagGC
CTACTCCCTGGaggccctggtggagggagcggacggGACCGCCCTAGTCC
GTGACATCCGGGCCGAGCTCGCGGCCTTGGAGCGACGCGGGGTCTCCCCC
AAGACACCGCAGCTGCGAGAAGCACGGAGGCAATGGCGGAGCGAAACCAG
GGCTTTGCGACGGGAGCTCCGGACGCGGGAGGcgcgggtggtgggggagg
tggtgtcgTCGCGGGAGGTGGTCCTGTGCACCTgtgtgggggcgggggcc
cggGTCTTGCGGGAGGAGCGCTTCGACCTGGTCGTGATCGACGAGGCCGC
GCAAGCTCTGGAAGCCGCCTGCTGGATCCCCATCCaacggggcgggcggg
tggtgctggcggggGACCACAAGCAGCTCGCGCCCACGGTCAAGagcggg
cgggcggaggccttgggTCTGGGGGTGACGCTCTTCGACCGGCTcatgcg
ggaggacgggttcggggggccggcgggggggcgggcctgcATGCTCCAGG
TCCAGTACCGGATGCATGCGGACATATGTGCATGGGCGTCCCGGGCGATG
TACCAAGGGCGCTTGCGAGCCGACCCCTCCGTGGCCGGGAGGACGCTGGC
GGGGCtggggaagggcgagagggaggacggggaagaggacggggacgagg
acatgaCGGAGGCAGTCTTGTTGTTCCTGGACACGGCGGGgtgcgggatg
gaggaggaagaaggggaaagacccccctctcccccgccctcctccccctc
ctcctccccctcccggccacgCGCTCCCAAAAAAACCGTGCGCGCCCGCA
GCCTCCTAAGCTCTTCTCGGGCCaacgagggcgaggctcAGGTCGTGGCG
GCCCATGTCCAGGCCTTACTCCGCCGCAccggcctcgcccccgccgacgT
GGCCGTCATCACGCCCTACAACGCCCAGGTGGAGCGCCTCCGCTCGCTGT
TGCACCCGCAGTACCCGGATCTGCAGGTCCGATCCGTGGACGGCTTCCAA
GGCGGGGAACGGGAGGCAGTGGTGCTCTCCTTGGTCCGGAGCAATCTCCG
AGGCGAGGTGGGCTTTCTCCGGGACGACCGGCGGTTGAACGTGGCCGTTA
CTCGGGCGAAACGGCACTGTTGCCTGGTCGGGGACTCGGAAACGGTGGGG
AGGCACcccttcctggcctccttGCTCCAGCATTgtgaggaggtggggca
GATCCGATCAGCCATGGAGTACCTCCcggagtggggagggggcggaggag
ggggagggaggggcgcggaggagggaagggaatcCAGGGAGCGGTCGACA
GCGTAA back to top
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