rna7745, rna7745 (mRNA) Nannochloropsis gaditana

Overview
Namerna7745
Unique Namerna7745
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1563
Alignment locationCM002473.1:232706..233092 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100396g4.7447.mrna
Orig protein idgnl|cribi|Naga_100396g4.7447
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:232706..233092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100396g4gene7499Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7745rna7745-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22949.1cds7724Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7745 ID=rna7745|Name=rna7745|organism=Nannochloropsis gaditana|type=mRNA|length=1563bp
ATGGCCGTTCACAGGTCACGACGTAGGAAAGGAAGAATAGATGAAGCCCA
GCAGGAGTGGAGTGGCCGAGAGGATGCGGGGGAGAAAGGCAGTGAAGGCA
TGAGACATGAGTGCTCCACGTCACAAATGGTGTCAGGAACAGGGAAGGGC
ATGCTGGCCCTGGTGATGCTCTTGACGGCCAGACAAACGGAGGGATTTCA
TTTCATGAGCCCATCGAAAACTGCGGGAAGCAGCGCGGCTCATGCAGGGA
GGGATGGCGGGGTAGCAGGGGTGGGACGGGTACCAGCACTCGGCAGCGAG
AAATTCGGTCGGCGCGAGGGACGCCCGTCGACTTTATCGAGGGGGGGCAG
AGCGAGCAGGTCCGGAGTGGTGGGCACAGGCGGCAAGTGGCTGCGGTCTT
CCTCCGAGAGTGTCGTGGGGCCGGCGGTGGAGCACCTGGTCCCTGCACCC
TCCCAGTGGGCGCTCCCCGACCTCTCCTTCTCCTCCTCCTCCGCCTCTTC
GCGCTCTCTTTTCCCCTCCATGGGCCAATCGTCCACTCCTGCCACTTTCC
CCTTCATTCTCTATCAGAGGGCAGCCCCCAGGGCCCTATCCTCCGCCTTG
GCAGGGGAGATCACTCAACCCTCGCTGGCAGAAACGGGGCTGTTGGCCTG
GGCCGGTGGCTGCAGCGACGGTCAAGGGGAAAGCGGCTTCTTCCATTTGG
ACTCGGAGCTGGGGCCTTTGTGTGGAAGAAAAGGGGGGGAGTCATGGGTC
GAGGAGGGGGAGGACGAGGAAGAACCGAGCGAGGAGTGCCGGCGGTTGTC
ACGGACCAGGAGAAGAGCGGAGGAGGCCGTTGATCCTCCCTCGGCGTCAG
TCACCCTGGGAGACGGTGGACGGAAGGCGCTCATGCGGGAAGAGGAAAGG
GTGGAGCCGGGCGGGACGTGGGCCGCCCGCGGGGAGGTCCGTCAGGCCTT
CCCCTCCATGACCGAGCAGCCTCCCCCCTCCCCGCAGGTGCAAGGGGACG
GTCCGGAGCCCAACCGGAACGATAACTTCACGATCAATCTTGGCAAGGCC
CTGGATCATCTGCGTGTGGATGTGCCTCTTCTGTTCGAGAGGGAGCCCGA
CCTGAGCATCTACACGGAGGACGTGCGGCTGCGCGATCACGCCCGCATTT
ACGCCTCGGGCAAGTTCATGTACCAGATGGTCTACTTCTCCCTGCGCGTG
GCGAGGATCTTCATGCCCATGCCTCCGCTGGTGGAGGTCCTGAACATTCG
CTGGTGTCCCGCCAGGCAGAGCATCGAGGTGCGATTCCAGATTCGCGTAG
ACACGCTCTCAGACAGCCTCTACTTCGACGCCGTCTCCGTCTACCGGGTC
AACGCGCGGGGCCTGATCTACGAGCACCTGATCGAGAAAGTGATACGGAA
CGACCTCTCGGAGAAACCCTCGATCGTCAACCTCTTCTACGCGACACGAC
AGGTCCTGGTGGGCGGCAAAGTGCCCATCCCGGACAGCGTGGGCATGAGG
CGGGACAGAGCGTGGTCAGGGATAGCAGGGTTGACAGTGAAAGTGGAGAT
AGAGCGCAGCTAG
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protein sequence of rna7745

>rna7745-protein ID=rna7745-protein|Name=rna7745|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MAVLLVSVEREGVETAREEGKGRRRKGIILPAYHVINLPVGHALVRTLLH
PWRLFDRQALEEGGKDRDARGKTTTDLCTLLSSRAGGLGRADGELGGKIW
RQTAWNERALRENAMGCGPSKRAFEDRK
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mRNA from alignment at CM002473.1:232706..233092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7745 ID=rna7745|Name=rna7745|organism=Nannochloropsis gaditana|type=mRNA|length=387bp|location=Sequence derived from alignment at CM002473.1:232706..233092+ (Nannochloropsis gaditana)
ATGGCGGTGCTCCTTGTTTCAgtagagagggaaggagttgagacggcaag
ggaagagggaaaagggaggcgtAGGAAGGGGATCATTTTGCCAGCTTACC
ATGTGATTAATTTGCCGGTAGGGCATGCTCTTGTGCGCACGCTTCTTCAT
CCCTGGCGCTTGTTTGACCggcaggcgctggaggagggaggcaaagatcG
AGACGCGCGGGGGAAGACGACCACAGACCTGTGTACCTTACTGAGctcga
gggcgggaggtttgGGCCGGGCAGATGGAGAACTGGGGGGGAAGATTTGG
AGGCAAACCGCATGGAATGAAAGAGCCTTGCGGGAAAATGCGATGGGGTG
TGGACCGAGCAAAAGGGCATTCGAGGATCGGAAATAA
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Coding sequence (CDS) from alignment at CM002473.1:232706..233092+

>rna7745 ID=rna7745|Name=rna7745|organism=Nannochloropsis gaditana|type=CDS|length=387bp|location=Sequence derived from alignment at CM002473.1:232706..233092+ (Nannochloropsis gaditana)
ATGGCGGTGCTCCTTGTTTCAgtagagagggaaggagttgagacggcaag
ggaagagggaaaagggaggcgtAGGAAGGGGATCATTTTGCCAGCTTACC
ATGTGATTAATTTGCCGGTAGGGCATGCTCTTGTGCGCACGCTTCTTCAT
CCCTGGCGCTTGTTTGACCggcaggcgctggaggagggaggcaaagatcG
AGACGCGCGGGGGAAGACGACCACAGACCTGTGTACCTTACTGAGctcga
gggcgggaggtttgGGCCGGGCAGATGGAGAACTGGGGGGGAAGATTTGG
AGGCAAACCGCATGGAATGAAAGAGCCTTGCGGGAAAATGCGATGGGGTG
TGGACCGAGCAAAAGGGCATTCGAGGATCGGAAATAA
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Synonyms
Publications