rna7730, rna7730 (mRNA) Nannochloropsis gaditana

Overview
Namerna7730
Unique Namerna7730
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length501
Alignment locationCM002473.1:184507..185176 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100102g8.70.mrna
Orig protein idgnl|cribi|Naga_100102g8.70
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:184507..185176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100102g8gene7484Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7730rna7730-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22959.1cds7709Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7730 ID=rna7730|Name=rna7730|organism=Nannochloropsis gaditana|type=mRNA|length=501bp
ATGACCTCCCAGGCCATTTCCACTGCTCGGCAGCGCGGCGGGCGAAAGCG
TGCAGGGTTGGCCCCCCGGTGGCGGCATCAGGCCGATGGAGACGGCGGAG
CGCATCCTCTCCTGCAGCAAACACTCCGCAAATTTTTCTTGAGGGTGCAT
CCAGACCTCTTCACTTATTACCCAAAACAGAAAGACGTCAATCAGGAATC
CTTCAGTCGCTTTCAAGCGTTCTTGGACGATGTCCGCGACAAGGATACCG
CTCCACCGCGCGCGGGGCTGCATTCCTACCGGTTTTTCCTCAAGACCAAG
GAAGACGGGCGCTTTCAAGAGGTATCACTGGAGCTCCGAACTACAGGGGG
TGACTGCCGGAACCTGGTGCAACGATCTTTGGAGGCTTTTTTCAAGGAGT
GCGGGTTGCCGGAGAAGTTCGTGTGGGCGGAGGGAGACTGGGACTACTCC
CTGGAGGATGCGGAGGAGAGGCAAACTCAGCAAAGTCAGCCAAGCGCATG
A
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protein sequence of rna7730

>rna7730-protein ID=rna7730-protein|Name=rna7730|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MRIFVSCFLAFNFVVMCKCGKVRILLVLHRTPSLVRKTMKYGKGLPLSLL
SVLKRNFKRDRIKCRAVFFRVRIDYARS
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mRNA from alignment at CM002473.1:184507..185176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7730 ID=rna7730|Name=rna7730|organism=Nannochloropsis gaditana|type=mRNA|length=670bp|location=Sequence derived from alignment at CM002473.1:184507..185176+ (Nannochloropsis gaditana)
GCTCTCGCCGCTTCAACTCCCGAGGACTTCCGAGCTGAATTTCCCTGAGA
TTTCCCGTGTTTGCTCTCTGTTTTAAGTTCTTTACGGTATATTGCTATAT
TTTATGAAAAGGTCGTGCGTTTTTGCAATGGCTCTTAAAGAGGAAAAATA
CGCACAATGGAAAAGCTTCACGCCGAGCGTCCTCACGCGTGATAGGTAAC
AACACATGGGGTCGCTCTCACTATCACTCTTTCCTCGCTTTGTTCCCATC
CATGTTGATAATAGTCCTCTGCCATTCGTGACTGTATCGTGTTGATTAAA
TATTGATTCTTATCATGCGCATTTTTGTTTCATGTTTCCTGGCATTTAAT
TTCGTTGTAATGTGTAAATGTGGAAAAGTAAGAATACTGCTTGTACTACA
CCGCACCCCCTCTCTTGTCCGGAAAACAATGAAGTATGGCAAAGGTTTGC
CACTTAGTTTGCTAAGCGTCCTCAAAAGAAACTTTAAACGAGATCGCATA
AAATGCAGAGCTGTATTTTTCCGGGTCAGGATAGATTATGCCAGAAGTTA
GTGGGTGTCGTCTCGTGGAGTTAGTTGCAATCAAATCACTAAAGGTAGCG
AATATGTATGTATTAAAAATTCAgcttgctttctttttcaagtgGTATCA
GCGCAGCACACCACATGTGG
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Coding sequence (CDS) from alignment at CM002473.1:184507..185176+

>rna7730 ID=rna7730|Name=rna7730|organism=Nannochloropsis gaditana|type=CDS|length=237bp|location=Sequence derived from alignment at CM002473.1:184507..185176+ (Nannochloropsis gaditana)
ATGCGCATTTTTGTTTCATGTTTCCTGGCATTTAATTTCGTTGTAATGTG
TAAATGTGGAAAAGTAAGAATACTGCTTGTACTACACCGCACCCCCTCTC
TTGTCCGGAAAACAATGAAGTATGGCAAAGGTTTGCCACTTAGTTTGCTA
AGCGTCCTCAAAAGAAACTTTAAACGAGATCGCATAAAATGCAGAGCTGT
ATTTTTCCGGGTCAGGATAGATTATGCCAGAAGTTAG
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Synonyms
Publications