rna7721, rna7721 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7721
Unique Name	rna7721
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	488
Alignment location	CM002473.1:168135..168575 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102791g1.10591.mrna
Orig protein id	gnl\|cribi\|Naga_102791g1.10591
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:168135..168575 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102791g1	gene7475	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7721	rna7721-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22973.1	cds7700	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:168135..168575+
coding sequence from alignment at CM002473.1:168135..168575+

mRNA sequence

>rna7721 ID=rna7721|Name=rna7721|organism=Nannochloropsis gaditana|type=mRNA|length=488bp
GATGGCGGCCTCGGCGGGCAACCACGCCCTCGCCCTCTCCTGGCACGGGG
CACAGCTCGGCATCCCCGTCTCCGTCTTCATGCCCGTGGTCGCCCCCCTC
GCCAAGGTTGACAAATGCCGGAAATTTGGCGCGAACGTGATCATCACCGG
CCAGCACATCGGGGAGGCGAAGGATTTCGCGCTCTCCAACCCCGAGTACG
AGGGAGTGAAGTACATCAACGGCTACGACGACCCCGAGATCGTGGCCGGG
GCGGGGACCATCGGCATCGAAGTCCTCGAGCAAATCTCCAAGGTCGACTA
CGTGATCGTTCCCGTGGGCGGCGCGGGTCTCCTTGCCGGCGTCTCGCTGG
CCATCAAGACCCTGCGCCCCGAGTGCAAGGTGATCGGGGTCGAGCCCAAG
AACTGCCGCTCCTTTCAGTCCGCCCTCGACCACGGTCATCCTGTCGTCGC
CGACGTTACCAGGTCTCAGCCCCGCCCTCCCTGCCGCC

protein sequence of rna7721

>rna7721-protein ID=rna7721-protein|Name=rna7721|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MVGPTAFEVARRYTDDVVYVDEKMIALAMLRLLENERSVGGRWTCPSTGT
RTWWCSCVGGTLTSPCWAGSSTGASPRTVASSASSPPSPTDRAASPGSPR

mRNA from alignment at CM002473.1:168135..168575+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7721 ID=rna7721|Name=rna7721|organism=Nannochloropsis gaditana|type=mRNA|length=441bp|location=Sequence derived from alignment at CM002473.1:168135..168575+ (Nannochloropsis gaditana)
ATGGTGGGCCCCACCGCCTTCGAGGTGGCGAGGCGCTATACGGACGACGT
GGTCTACGTGGACGAGAAGATGATCGCGCTGGCCATGCTCCGGCTTCTGG
AGAACGAGCGcagcgtggtggaggggggcggggccacAGGGCTGGCTGCC
CTGCTCCCAGGGGGGCCGCTGGACCTGCCCGAGTACCGGGACAAGAACGT
GGTGGTGCTCCTGTGTGGGGGGAACATtggtaggaaggaagggagggcgg
gagggagggagggagggcgggcgggtgcGTCCCAGGGCGTCTCTGACAAG
GCCTCCCACCTGGACCCCGCACAGACATCACCATGCTGGGCCGGGTCATC
GACAGGGGCCTCGCCGCGGACGGTCGCCTCATCCGCTTCATCGCCACCGT
CTCCGACAGACCGGGCGGCATCTCCAGGCTCACCAAGGTGA

Coding sequence (CDS) from alignment at CM002473.1:168135..168575+

>rna7721 ID=rna7721|Name=rna7721|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002473.1:168135..168575+ (Nannochloropsis gaditana)
ATGGTGGGCCCCACCGCCTTCGAGGTGGCGAGGCGCTATACGGACGACGT
GGTCTACGTGGACGAGAAGATGATCGCGCTGGCCATGCTCCGGCTTCTGG
AGAACGAGCGcagcgtgGGGGGCCGCTGGACCTGCCCGAGTACCGGGACA
AGAACGTGGTGGTGCTCCTGTGTGGGGGGAACATtgACATCACCATGCTG
GGCCGGGTCATCGACAGGGGCCTCGCCGCGGACGGTCGCCTCATCCGCTT
CATCGCCACCGTCTCCGACAGACCGGGCGGCATCTCCAGGCTCACCAAGG
TGAATGGTGGGCCCCACCGCCTTCGAGGTGGCGAGGCGCTATACGGACGA
CGTGGTCTACGTGGACGAGAAGATGATCGCGCTGGCCATGCTCCGGCTTC
TGGAGAACGAGCGcagcgtgGGGGGCCGCTGGACCTGCCCGAGTACCGGG
ACAAGAACGTGGTGGTGCTCCTGTGTGGGGGGAACATtgACATCACCATG
CTGGGCCGGGTCATCGACAGGGGCCTCGCCGCGGACGGTCGCCTCATCCG
CTTCATCGCCACCGTCTCCGACAGACCGGGCGGCATCTCCAGGCTCACCA
AGGTGAATGGTGGGCCCCACCGCCTTCGAGGTGGCGAGGCGCTATACGGA
CGACGTGGTCTACGTGGACGAGAAGATGATCGCGCTGGCCATGCTCCGGC
TTCTGGAGAACGAGCGcagcgtgGGGGGCCGCTGGACCTGCCCGAGTACC
GGGACAAGAACGTGGTGGTGCTCCTGTGTGGGGGGAACATtgACATCACC
ATGCTGGGCCGGGTCATCGACAGGGGCCTCGCCGCGGACGGTCGCCTCAT
CCGCTTCATCGCCACCGTCTCCGACAGACCGGGCGGCATCTCCAGGCTCA
CCAAGGTGA

Synonyms

Publications