EWM22990.1, cds7684 (CDS) Nannochloropsis gaditana

Overview
NameEWM22990.1
Unique Namecds7684
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:134048..134058 -
Alignment locationCM002473.1:133811..133916 -
Alignment locationCM002473.1:133587..133665 -
Alignment locationCM002473.1:133293..133380 -
Alignment locationCM002473.1:133020..133145 -
Alignment locationCM002473.1:132744..132822 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22990.1
Productphenylalanyl-trna synthetase
Orig transcript idgnl|cribi|Naga_101153g1.5434.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:134048..134058 -
CM002473.1supercontigCM002473.1:133811..133916 -
CM002473.1supercontigCM002473.1:133587..133665 -
CM002473.1supercontigCM002473.1:133293..133380 -
CM002473.1supercontigCM002473.1:133020..133145 -
CM002473.1supercontigCM002473.1:132744..132822 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
GO:0043039tRNA aminoacylation
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000049tRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR006195aa-tRNA-synth_II
IPR002319Phenylalanyl-tRNA_Synthase
Homology
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|585103740|gb|EWM22990.1| (phenylalanyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 340.117 bits (871), Expect = 1.964e-118
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF
Sbjct:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|397644602|gb|EJK76462.1| (hypothetical protein THAOC_01772, partial [Thalassiosira oceanica])

HSP 1 Score: 300.056 bits (767), Expect = 2.591e-101
Identity = 139/162 (85.80%), Postives = 148/162 (91.36%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA QPGGF P KYFSIDRVFRNESMDATHLCEFHQVEGLVAD NL+LGDLIGTI+TFF +IGIT L+FKPA+NPYTEPSME+FGYHPDLKKWTEIGNSGMFRPEML PMGLPE+VRVIAWGLSLERPTMIKYRI NIR LFGHK  L  TR APIC+F
Sbjct:   66 MLYKLANQPGGFKPAKYFSIDRVFRNESMDATHLCEFHQVEGLVADYNLSLGDLIGTIETFFRKIGITQLRFKPAFNPYTEPSMEVFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIDNIRNLFGHKVDLAMTRNAPICRF 227          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|299472119|emb|CBN77104.1| (Phenylalanine--tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 301.597 bits (771), Expect = 2.022e-98
Identity = 134/162 (82.72%), Postives = 152/162 (93.83%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            ML+++A Q GGF+P++YFSIDRVFRNE+MDATHLCEFHQVEG++ADRNL LGDLIG IKTFF +IGIT ++FKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP+DVRVIAWGLSLERPTMIKY I+NIRELFGHKA L+RT+ AP+C+F
Sbjct:  343 MLHRIANQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGMIADRNLCLGDLIGVIKTFFHKIGITQIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRF 504          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|1210526166|dbj|GAX15084.1| (phenylalanyl-tRNA synthetase alpha chain [Fistulifera solaris])

HSP 1 Score: 301.212 bits (770), Expect = 3.501e-98
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA Q GGF P +YFSIDRVFRNE+MDATHLCEFHQVEGLVAD +L+LGDLIGTI+TFF++IGIT L+FKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLPE+VRVIAWGLSLERPTMIKYRI NIRELFGHK  + RTR AP+C+F
Sbjct:  341 MLYKLANQEGGFKPARYFSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFKKIGITKLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIKNIRELFGHKVDMGRTRTAPVCRF 502          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|219111869|ref|XP_002177686.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410571|gb|EEC50500.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 299.671 bits (766), Expect = 1.006e-97
Identity = 135/162 (83.33%), Postives = 150/162 (92.59%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA Q GGF P +Y+SIDRVFRNE+MDATHLCEFHQVEGLVAD +L+LGDLIGTI+TFF +IGIT+L+FKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLPE+VRVIAWGLSLERPTMIKYRI NIR+LFGHK  + RTR APIC+F
Sbjct:  338 MLYKLANQEGGFQPARYYSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFNKIGITELRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRF 499          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|1210517388|dbj|GAX23645.1| (phenylalanyl-tRNA synthetase alpha chain [Fistulifera solaris])

HSP 1 Score: 298.13 bits (762), Expect = 4.572e-97
Identity = 135/162 (83.33%), Postives = 149/162 (91.98%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA Q GGF P +YFSIDRVFRNE+MDATHLCEFHQVEGLVAD +L+LGDLIGTI+TFF++IGIT L+FKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PM LPE+VRVIAWGLSLERPTMIKYRI NIRELFGHK  + RTR AP+C+F
Sbjct:  341 MLYKLANQEGGFKPARYFSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFKKIGITKLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMELPENVRVIAWGLSLERPTMIKYRIKNIRELFGHKVDMGRTRTAPVCRF 502          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|224001682|ref|XP_002290513.1| (phenylalanyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >gi|220973935|gb|EED92265.1| phenylalanyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 295.819 bits (756), Expect = 3.287e-96
Identity = 134/162 (82.72%), Postives = 147/162 (90.74%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA Q GGF P +YFSIDRVFRNE+MDATHLCEFHQVEGLVAD NL+LGDLIGTI+TFF +IGIT L+FKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLPE+VRVIAWGLSLERPTMIKYRI NIR LFGHK  +  T+ AP+C+F
Sbjct:  337 MLYKLANQEGGFKPARYFSIDRVFRNETMDATHLCEFHQVEGLVADYNLSLGDLIGTIETFFRKIGITKLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIDNIRNLFGHKVDMGMTKNAPVCRF 498          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|635367607|emb|CCI44216.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 283.493 bits (724), Expect = 1.497e-95
Identity = 129/162 (79.63%), Postives = 147/162 (90.74%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA QP GF PRKYFSIDRVFRNE+MDATHL EFHQVEG+VAD NL+LGDLIG I+ FF++IGIT ++FKPAYNPYTEPSMEIF +HPDLKKWTEIGNSG+FRPEML PMGLP+DVRVIAWGLSLERPTMIKYRI NIRELFGHK  L++T+AA + ++
Sbjct:   38 MLYKLANQPEGFQPRKYFSIDRVFRNENMDATHLAEFHQVEGVVADYNLSLGDLIGIIEAFFKKIGITKMRFKPAYNPYTEPSMEIFAFHPDLKKWTEIGNSGVFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYRIDNIRELFGHKVDLEKTKAAKLYRY 199          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|1072230708|gb|OEU15441.1| (tRNA-synt_2d-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 293.893 bits (751), Expect = 2.444e-95
Identity = 132/161 (81.99%), Postives = 147/161 (91.30%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQ 161
            MLY+LA QPGGF P ++FSIDRVFRNE+MDATHLCEFHQVEG VAD +L+LGDL+GTI+TF  +IGIT L+FKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRI NIR+LFGHK  + RTR AP+ +
Sbjct:  338 MLYKLANQPGGFKPARHFSIDRVFRNETMDATHLCEFHQVEGWVADYDLSLGDLLGTIETFLNKIGITQLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRIDNIRDLFGHKVEMARTRTAPLLE 498          
BLAST of EWM22990.1 vs. NCBI_GenBank
Match: gi|635367608|emb|CCI44217.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 286.574 bits (732), Expect = 1.427e-94
Identity = 129/162 (79.63%), Postives = 147/162 (90.74%), Query Frame = 0
Query:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
            MLY+LA QP GF PRKYFSIDRVFRNE+MDATHL EFHQVEG+VAD NL+LGDLIG I+ FF++IGIT ++FKPAYNPYTEPSMEIF +HPDLKKWTEIGNSG+FRPEML PMGLP+DVRVIAWGLSLERPTMIKYRI NIRELFGHK  L++T+AA + ++
Sbjct:  188 MLYKLANQPEGFQPRKYFSIDRVFRNENMDATHLAEFHQVEGVVADYNLSLGDLIGIIEAFFKKIGITKMRFKPAYNPYTEPSMEIFAFHPDLKKWTEIGNSGVFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYRIDNIRELFGHKVDLEKTKAAKLYRY 349          
The following BLAST results are available for this feature:
BLAST of EWM22990.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103740|gb|EWM22990.1|1.964e-118100.00phenylalanyl-trna synthetase [Nannochloropsis gadi... [more]
gi|397644602|gb|EJK76462.1|2.591e-10185.80hypothetical protein THAOC_01772, partial [Thalass... [more]
gi|299472119|emb|CBN77104.1|2.022e-9882.72Phenylalanine--tRNA ligase [Ectocarpus siliculosus... [more]
gi|1210526166|dbj|GAX15084.1|3.501e-9883.95phenylalanyl-tRNA synthetase alpha chain [Fistulif... [more]
gi|219111869|ref|XP_002177686.1|1.006e-9783.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517388|dbj|GAX23645.1|4.572e-9783.33phenylalanyl-tRNA synthetase alpha chain [Fistulif... [more]
gi|224001682|ref|XP_002290513.1|3.287e-9682.72phenylalanyl-trna synthetase [Thalassiosira pseudo... [more]
gi|635367607|emb|CCI44216.1|1.497e-9579.63unnamed protein product [Albugo candida][more]
gi|1072230708|gb|OEU15441.1|2.444e-9581.99tRNA-synt_2d-domain-containing protein [Fragilario... [more]
gi|635367608|emb|CCI44217.1|1.427e-9479.63unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7705rna7705Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications