rna7705, rna7705 (mRNA) Nannochloropsis gaditana

Overview
Namerna7705
Unique Namerna7705
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length819
Alignment locationCM002473.1:132607..134194 -

Link to JBrowse

Properties
Property NameValue
Productphenylalanyl-trna synthetase
Orig transcript idgnl|cribi|Naga_101153g1.5434.mrna
Orig protein idgnl|cribi|Naga_101153g1.5434
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:132607..134194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101153g1gene7459Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7705rna7705-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22990.1cds7684Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7705 ID=rna7705|Name=rna7705|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGGGCCACCCGTCCCAGGGGGTCCGCGTGGTCTTGACGGACGGCACCAC
CCACGCCGTCGACTCCTCAGACATGGCATTTCGGATCGCTGCTGCTTATG
CTGTGCGAGAAGCCATGCGGGCGGGGCAAGCCTGCATCTTGGAACCGATC
ATGAACCTGGAGGTGACCTCCCCCACGGAATTCCAGGGCAACATTATGGG
CCAGCTCAATCGACGCATGGCCGTCATTCAGAGCAACGACGTGAGCGAGG
ACGGCGCGACGGTTTGCATCAAGGCCGACGCCCCCCTCGCCCAGATGTTT
GGGTATTCCACCGACTTGCGAAGTATTACCCAAGGGAAAGGCGAGTTCAC
GATGGAGTACAAGACACACCTCCCCGTGACCAGGGATATCCAGGAGCAGT
TGGTGAAGAAATACCGGGAGGCGTCGGCGGGGGGAGGGGAGGACAACTTT
TCTTCTCTTTCGATTGCGCCCCGGCTGGGGAGGGTGGAGGACGGTGTGGG
CACGGGGGGGACGTCTGTCGGGCATGTGTGCTGGTCATGCGTAGGCTGGA
GTCCCACGGGCGAGAAGGAGAAAGTTCCAGAATGTCTGGAAATCGAATGG
CTCCCGGTCTCGAGGGACGCCCGTGGGAGGCGAGTTTGGGAGCAGTCTAG
GGCCTCGGTGGGCAGCAGGAGCGAGGAAAGCCCCGGGACAAATGTGCCGC
TTGGCGGGCCCGTCATCTGCTGGCTGCATTGGGCTACCGTTGCACCCTTG
GGAAGAAAGAAAAAAAATGTTCGGGGAGAGGAAGGGACCGTGGCTAGGCT
CTCAATGGCAAGCAAATGA
back to top

protein sequence of rna7705

>rna7705-protein ID=rna7705-protein|Name=rna7705|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLT
LGDLIGTIKTFFERIGITDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIG
NSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAA
LDRTRAAPICQF
back to top

mRNA from alignment at CM002473.1:132607..134194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7705 ID=rna7705|Name=rna7705|organism=Nannochloropsis gaditana|type=mRNA|length=1588bp|location=Sequence derived from alignment at CM002473.1:132607..134194- (Nannochloropsis gaditana)
TCCGGATTACTACGAGCGCGTGAAGCGCACGCACCAAGAGGGAGGCTACG
GCTCCATCGGCTACGGGTGCGCCTTTCAACGGGAGGAGGCGTTCAAGAAC
CTCCTGAGGACCCACACCACCGCGGTCTCCGCCCGCATGCTCTACCAGTA
CGGTTTTCGCGCCATTTTTCCTGTTGCCGTCTCCGCCTTTCGCGCCAATT
TTCCCCTTCCCGTCCTTCCCTCCCTCCCCTCGGTCACCTCAGTCGCTGCT
CACCCCTGCCTCCGCCCCTCCCTCCTAGGCTCGCGACTCAACCGGGCGGC
TTCAGTCCCCGGAAGTACTTCAGCATCGACCGAGTCTTTCGAAACGAGAG
CATGGATGCCACCCACCTCTGCGAGTTTCATCAGGTCGCCTTCCTCCCCG
GGCTCCCCTTGACTCCTCGCTTGGCTTGTTCCCCTTCCCTCCCTTCCTCC
CCTGCCTGTTCTCACCCTCCTCCCTCCCTCCCTCTCGCCCGCTCGCCCGC
CCTCCCTCCCCAACAATGCTCCTACACAGGTGGAAGGCCTGGTCGCGGAC
AGGAATTTGACCTTGGGGGACTTGATTGGCACCATTAAAACCTTCTTTGA
ACGCATCGGTAGGGCGGGCGGGGGGGGGGCATGAGAGGGCGTTGTGGACC
CCGGCGTGAGCCCCAACGCCGGGGGAGCTGGCCTTTGGGACGAACAGGCG
TCCATTCGGACGAGAGACGTTCGGATGATGGAGGCTCTCGGAGGGACGTG
TTCGACGACGAAATCGTCTGACACCGTCCGCCCTTTTCCCTCCTCCCCCG
GACCTTCCCCGCAGGGATCACGGACCTCAAGTTCAAGCCCGCCTACAACC
CATACACAGAGCCGTCGATGGAGATCTTCGGCTACCACCCCGACCTGAAA
AAGTGGGTCGTTCGCCGTCTCCTTCCCGCCACTGTCCTTCCTTCTTCCTT
TCCCGGGGACCGAGGGGGGGGTGCCCGCCCTACCTATCTCGAGCTTCCTC
CGCCGACCTCACACCGTCTTTGTCCCTTTCCCCCCCCCTCCCCGTGCAGG
TGGACGGAGATCGGGAACAGCGGCATGTTCCGACCGGAAATGCTCCGGCC
CATGGGGTTGCCGGAGGACGTGCGGGTCATCGCCTGGGGGCTCTCCCTAG
AGCGACCTACCATGATCAAATACAGGTACGCCTTGTTTCTCTCAGAGAGA
GGCCGTCCGCCCCAAGCCTGAAACGGCAGGGGAGGAGTGTCGTTCTTGTT
TCCTGTGGTGACGCGCTGCTTGTGGGGGATAGCGGTTCGATTCCCACAGT
CAACGACTTGTCTCCTCTGGCCCCTCTCATGGAAAGTTTTCGTTTTTCCT
CTTTGTGTGATAACTTTGTCAGAATCTCGAACATTCGGGAGCTTTTCGGG
CACAAAGCGGCCCTGGACCGGACACGCGCGGCGCCGATATGTCAATTCTA
AGGCAGCAAAAAAAGACCGGTGGAGGGGTTCAAAAGCAATGTATGACGTT
GAAATGACGCCGGTCAGGCCGACACAGCAGGGCCGATGCGATGTGTATCC
TCTGAACGTTCATTTGCTTGCCATTGAGAGCCTAGCCA
back to top

Coding sequence (CDS) from alignment at CM002473.1:132607..134194-

>rna7705 ID=rna7705|Name=rna7705|organism=Nannochloropsis gaditana|type=CDS|length=2934bp|location=Sequence derived from alignment at CM002473.1:132607..134194- (Nannochloropsis gaditana)
AATCTCGAACATTCGGGAGCTTTTCGGGCACAAAGCGGCCCTGGACCGGA
CACGCGCGGCGCCGATATGTCAATTCTAAGTGGACGGAGATCGGGAACAG
CGGCATGTTCCGACCGGAAATGCTCCGGCCCATGGGGTTGCCGGAGGACG
TGCGGGTCATCGCCTGGGGGCTCTCCCTAGAGCGACCTACCATGATCAAA
TACAGGGATCACGGACCTCAAGTTCAAGCCCGCCTACAACCCATACACAG
AGCCGTCGATGGAGATCTTCGGCTACCACCCCGACCTGAAAAAGTGGAAG
GCCTGGTCGCGGACAGGAATTTGACCTTGGGGGACTTGATTGGCACCATT
AAAACCTTCTTTGAACGCATCGGCTCGCGACTCAACCGGGCGGCTTCAGT
CCCCGGAAGTACTTCAGCATCGACCGAGTCTTTCGAAACGAGAGCATGGA
TGCCACCCACCTCTGCGAGTTTCATCAGATGCTCTACCAAATCTCGAACA
TTCGGGAGCTTTTCGGGCACAAAGCGGCCCTGGACCGGACACGCGCGGCG
CCGATATGTCAATTCTAAGTGGACGGAGATCGGGAACAGCGGCATGTTCC
GACCGGAAATGCTCCGGCCCATGGGGTTGCCGGAGGACGTGCGGGTCATC
GCCTGGGGGCTCTCCCTAGAGCGACCTACCATGATCAAATACAGGGATCA
CGGACCTCAAGTTCAAGCCCGCCTACAACCCATACACAGAGCCGTCGATG
GAGATCTTCGGCTACCACCCCGACCTGAAAAAGTGGAAGGCCTGGTCGCG
GACAGGAATTTGACCTTGGGGGACTTGATTGGCACCATTAAAACCTTCTT
TGAACGCATCGGCTCGCGACTCAACCGGGCGGCTTCAGTCCCCGGAAGTA
CTTCAGCATCGACCGAGTCTTTCGAAACGAGAGCATGGATGCCACCCACC
TCTGCGAGTTTCATCAGATGCTCTACCAAATCTCGAACATTCGGGAGCTT
TTCGGGCACAAAGCGGCCCTGGACCGGACACGCGCGGCGCCGATATGTCA
ATTCTAAGTGGACGGAGATCGGGAACAGCGGCATGTTCCGACCGGAAATG
CTCCGGCCCATGGGGTTGCCGGAGGACGTGCGGGTCATCGCCTGGGGGCT
CTCCCTAGAGCGACCTACCATGATCAAATACAGGGATCACGGACCTCAAG
TTCAAGCCCGCCTACAACCCATACACAGAGCCGTCGATGGAGATCTTCGG
CTACCACCCCGACCTGAAAAAGTGGAAGGCCTGGTCGCGGACAGGAATTT
GACCTTGGGGGACTTGATTGGCACCATTAAAACCTTCTTTGAACGCATCG
GCTCGCGACTCAACCGGGCGGCTTCAGTCCCCGGAAGTACTTCAGCATCG
ACCGAGTCTTTCGAAACGAGAGCATGGATGCCACCCACCTCTGCGAGTTT
CATCAGATGCTCTACCAAATCTCGAACATTCGGGAGCTTTTCGGGCACAA
AGCGGCCCTGGACCGGACACGCGCGGCGCCGATATGTCAATTCTAAGTGG
ACGGAGATCGGGAACAGCGGCATGTTCCGACCGGAAATGCTCCGGCCCAT
GGGGTTGCCGGAGGACGTGCGGGTCATCGCCTGGGGGCTCTCCCTAGAGC
GACCTACCATGATCAAATACAGGGATCACGGACCTCAAGTTCAAGCCCGC
CTACAACCCATACACAGAGCCGTCGATGGAGATCTTCGGCTACCACCCCG
ACCTGAAAAAGTGGAAGGCCTGGTCGCGGACAGGAATTTGACCTTGGGGG
ACTTGATTGGCACCATTAAAACCTTCTTTGAACGCATCGGCTCGCGACTC
AACCGGGCGGCTTCAGTCCCCGGAAGTACTTCAGCATCGACCGAGTCTTT
CGAAACGAGAGCATGGATGCCACCCACCTCTGCGAGTTTCATCAGATGCT
CTACCAAATCTCGAACATTCGGGAGCTTTTCGGGCACAAAGCGGCCCTGG
ACCGGACACGCGCGGCGCCGATATGTCAATTCTAAGTGGACGGAGATCGG
GAACAGCGGCATGTTCCGACCGGAAATGCTCCGGCCCATGGGGTTGCCGG
AGGACGTGCGGGTCATCGCCTGGGGGCTCTCCCTAGAGCGACCTACCATG
ATCAAATACAGGGATCACGGACCTCAAGTTCAAGCCCGCCTACAACCCAT
ACACAGAGCCGTCGATGGAGATCTTCGGCTACCACCCCGACCTGAAAAAG
TGGAAGGCCTGGTCGCGGACAGGAATTTGACCTTGGGGGACTTGATTGGC
ACCATTAAAACCTTCTTTGAACGCATCGGCTCGCGACTCAACCGGGCGGC
TTCAGTCCCCGGAAGTACTTCAGCATCGACCGAGTCTTTCGAAACGAGAG
CATGGATGCCACCCACCTCTGCGAGTTTCATCAGATGCTCTACCAAATCT
CGAACATTCGGGAGCTTTTCGGGCACAAAGCGGCCCTGGACCGGACACGC
GCGGCGCCGATATGTCAATTCTAAGTGGACGGAGATCGGGAACAGCGGCA
TGTTCCGACCGGAAATGCTCCGGCCCATGGGGTTGCCGGAGGACGTGCGG
GTCATCGCCTGGGGGCTCTCCCTAGAGCGACCTACCATGATCAAATACAG
GGATCACGGACCTCAAGTTCAAGCCCGCCTACAACCCATACACAGAGCCG
TCGATGGAGATCTTCGGCTACCACCCCGACCTGAAAAAGTGGAAGGCCTG
GTCGCGGACAGGAATTTGACCTTGGGGGACTTGATTGGCACCATTAAAAC
CTTCTTTGAACGCATCGGCTCGCGACTCAACCGGGCGGCTTCAGTCCCCG
GAAGTACTTCAGCATCGACCGAGTCTTTCGAAACGAGAGCATGGATGCCA
CCCACCTCTGCGAGTTTCATCAGATGCTCTACCA
back to top
Synonyms
Publications