EWM23088.1, cds7586 (CDS) Nannochloropsis gaditana

Overview
NameEWM23088.1
Unique Namecds7586
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:362939..363036 +
Alignment locationCM002472.1:363116..363411 +
Alignment locationCM002472.1:363626..363773 +
Alignment locationCM002472.1:363934..364006 +
Alignment locationCM002472.1:364104..364111 +
Alignment locationCM002472.1:364155..364173 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23088.1
Productrho gtpase
Orig transcript idgnl|cribi|Naga_101070g1.733.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:362939..363036 +
CM002472.1supercontigCM002472.1:363116..363411 +
CM002472.1supercontigCM002472.1:363626..363773 +
CM002472.1supercontigCM002472.1:363934..364006 +
CM002472.1supercontigCM002472.1:364104..364111 +
CM002472.1supercontigCM002472.1:364155..364173 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR003578Small_GTPase_Rho
IPR020849Small_GTPase_Ras
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|585103943|gb|EWM23088.1| (rho gtpase [Nannochloropsis gaditana])

HSP 1 Score: 446.432 bits (1147), Expect = 8.594e-159
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MSLMPALLSHTKGFLRRSYVSNLCLDSGSCVLWESHLYPRHLPPQPSKQSKHPTQAHSWHQGGRSSNCWSNGTFHPEGNDGFLVMQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPECWPQS 213
            MSLMPALLSHTKGFLRRSYVSNLCLDSGSCVLWESHLYPRHLPPQPSKQSKHPTQAHSWHQGGRSSNCWSNGTFHPEGNDGFLVMQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPECWPQS
Sbjct:    1 MSLMPALLSHTKGFLRRSYVSNLCLDSGSCVLWESHLYPRHLPPQPSKQSKHPTQAHSWHQGGRSSNCWSNGTFHPEGNDGFLVMQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPECWPQS 213          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|676385771|ref|XP_009036164.1| (hypothetical protein AURANDRAFT_70159 [Aureococcus anophagefferens] >gi|323453165|gb|EGB09037.1| hypothetical protein AURANDRAFT_70159 [Aureococcus anophagefferens])

HSP 1 Score: 244.973 bits (624), Expect = 1.688e-79
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQNIKCVVVGDGAVGKTCLLISYTTN+FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLC+++++P+SFENI+ KWYPEI HHAPGVPFILVGTK DLR DP+
Sbjct:    1 MQNIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSITNPNSFENIRTKWYPEINHHAPGVPFILVGTKLDLRNDPD 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|669168903|ref|XP_008619800.1| (Ras-like protein Rac1 [Saprolegnia diclina VS20] >gi|813157847|ref|XP_012202272.1| Ras-like protein Rac1 [Saprolegnia parasitica CBS 223.65] >gi|813224848|ref|XP_012211779.1| Ras-like protein Rac1 [Saprolegnia parasitica CBS 223.65] >gi|530728515|gb|EQC26757.1| Ras-like protein Rac1 [Saprolegnia diclina VS20] >gi|641522213|gb|KDO17513.1| Ras-like protein Rac1 [Saprolegnia parasitica CBS 223.65] >gi|641532875|gb|KDO26882.1| Ras-like protein Rac1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 239.965 bits (611), Expect = 1.968e-77
Identity = 107/124 (86.29%), Postives = 119/124 (95.97%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQN+KCVVVGDGAVGKTC+LISYTTN+FPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSYPQTDVFL+C++V SP+SFEN+K KWYPEI+HHAPGVPFILVGTK DLR+D +
Sbjct:    3 MQNMKCVVVGDGAVGKTCVLISYTTNAFPGEYIPTVFDNYSANVMVDAKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPASFENVKAKWYPEIQHHAPGVPFILVGTKLDLREDED 126          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|1173956417|gb|OQS03199.1| (hypothetical protein THRCLA_04501 [Thraustotheca clavata])

HSP 1 Score: 238.424 bits (607), Expect = 5.492e-77
Identity = 107/124 (86.29%), Postives = 118/124 (95.16%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            M N+KCVVVGDGAVGKTC+LISYTTN+FPGEYIPTVFDNYSANVMVD KPINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C++V SP+SFEN+K KW+PEI+HHAPGVPFILVGTK DLR+D E
Sbjct:    1 MHNMKCVVVGDGAVGKTCVLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPASFENVKAKWFPEIQHHAPGVPFILVGTKLDLREDEE 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|1021065454|emb|SAL98525.1| (hypothetical protein, partial, partial [Absidia glauca])

HSP 1 Score: 237.654 bits (605), Expect = 7.310e-77
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQ+IKCVVVGDGAVGKTCLLISYTTN+FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C+++ SP SFEN++ KWYPEI HHAP +P ILVGTK DLR+DPE
Sbjct:    1 MQSIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFSLVSPPSFENVRTKWYPEISHHAPNIPMILVGTKLDLREDPE 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|1021065882|emb|SAL97984.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 238.039 bits (606), Expect = 7.969e-77
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQ+IKCVVVGDGAVGKTCLLISYTTN+FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C+++ SP SFEN++ KWYPEI HHAP +P ILVGTK DLR+DPE
Sbjct:    1 MQSIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFSLVSPPSFENVRTKWYPEISHHAPNIPMILVGTKLDLREDPE 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|1183321771|gb|ORX51573.1| (hypothetical protein DM01DRAFT_1337088 [Hesseltinella vesiculosa])

HSP 1 Score: 237.654 bits (605), Expect = 1.094e-76
Identity = 108/124 (87.10%), Postives = 116/124 (93.55%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQ+IKCVVVGDGAVGKTCLLISYTTN+FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C+++ SP SFEN+K KWYPEI HHAP  P ILVGTK DLR+DPE
Sbjct:    1 MQSIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPPSFENVKTKWYPEISHHAPNTPIILVGTKLDLREDPE 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|675181823|ref|XP_008899796.1| (hypothetical protein PPTG_07366 [Phytophthora parasitica INRA-310] >gi|566031756|gb|ETI54667.1| hypothetical protein F443_02555 [Phytophthora parasitica P1569] >gi|567969450|gb|ETK94537.1| hypothetical protein L915_02430 [Phytophthora parasitica] >gi|567997832|gb|ETL47911.1| hypothetical protein L916_02405 [Phytophthora parasitica] >gi|568027055|gb|ETM01023.1| hypothetical protein L917_02331 [Phytophthora parasitica] >gi|568057539|gb|ETM54201.1| hypothetical protein L914_02427 [Phytophthora parasitica] >gi|568100498|gb|ETN15197.1| hypothetical protein PPTG_07366 [Phytophthora parasitica INRA-310] >gi|570335478|gb|ETO83426.1| hypothetical protein F444_02550 [Phytophthora parasitica P1976] >gi|570959539|gb|ETP24518.1| hypothetical protein F441_02497 [Phytophthora parasitica CJ01A1] >gi|570995663|gb|ETP52464.1| hypothetical protein F442_02524 [Phytophthora parasitica P10297])

HSP 1 Score: 237.654 bits (605), Expect = 1.813e-76
Identity = 106/124 (85.48%), Postives = 118/124 (95.16%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQN+KCVVVGDGAVGKTC+LISYTTN+FPGEYIPTVFDNYSANVMVD +PINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C++V S +SFEN+K+KW PEI+HHAPGVPFILVGTK+DLR D E
Sbjct:    4 MQNMKCVVVGDGAVGKTCVLISYTTNTFPGEYIPTVFDNYSANVMVDNRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSRASFENVKSKWLPEIRHHAPGVPFILVGTKSDLRDDEE 127          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|1183324845|gb|ORX54619.1| (GTP binding protein Rac1 [Hesseltinella vesiculosa])

HSP 1 Score: 237.269 bits (604), Expect = 1.932e-76
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQ+IKCVVVGDGAVGKTCLLISYTTN+FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C+++ SP SFEN++ KWYPEI HHAP +P ILVGTK DLR+DPE
Sbjct:    1 MQSIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFSLVSPPSFENVRTKWYPEISHHAPNIPMILVGTKLDLREDPE 124          
BLAST of EWM23088.1 vs. NCBI_GenBank
Match: gi|970642290|gb|KUF84008.1| (Ras-related protein Rac1 [Phytophthora nicotianae])

HSP 1 Score: 236.884 bits (603), Expect = 2.570e-76
Identity = 106/124 (85.48%), Postives = 118/124 (95.16%), Query Frame = 0
Query:   85 MQNIKCVVVGDGAVGKTCLLISYTTNSFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLLCYAVSSPSSFENIKNKWYPEIKHHAPGVPFILVGTKTDLRKDPE 208
            MQN+KCVVVGDGAVGKTC+LISYTTN+FPGEYIPTVFDNYSANVMVD +PINLGLWDTAGQEDYDRLRPLSYPQTDVFL+C++V S +SFEN+K+KW PEI+HHAPGVPFILVGTK+DLR D E
Sbjct:    1 MQNMKCVVVGDGAVGKTCVLISYTTNTFPGEYIPTVFDNYSANVMVDNRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSRASFENVKSKWLPEIRHHAPGVPFILVGTKSDLRDDEE 124          
The following BLAST results are available for this feature:
BLAST of EWM23088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103943|gb|EWM23088.1|8.594e-159100.00rho gtpase [Nannochloropsis gaditana][more]
gi|676385771|ref|XP_009036164.1|1.688e-7989.52hypothetical protein AURANDRAFT_70159 [Aureococcus... [more]
gi|669168903|ref|XP_008619800.1|1.968e-7786.29Ras-like protein Rac1 [Saprolegnia diclina VS20] >... [more]
gi|1173956417|gb|OQS03199.1|5.492e-7786.29hypothetical protein THRCLA_04501 [Thraustotheca c... [more]
gi|1021065454|emb|SAL98525.1|7.310e-7786.29hypothetical protein, partial, partial [Absidia gl... [more]
gi|1021065882|emb|SAL97984.1|7.969e-7786.29hypothetical protein [Absidia glauca][more]
gi|1183321771|gb|ORX51573.1|1.094e-7687.10hypothetical protein DM01DRAFT_1337088 [Hesseltine... [more]
gi|675181823|ref|XP_008899796.1|1.813e-7685.48hypothetical protein PPTG_07366 [Phytophthora para... [more]
gi|1183324845|gb|ORX54619.1|1.932e-7686.29GTP binding protein Rac1 [Hesseltinella vesiculosa... [more]
gi|970642290|gb|KUF84008.1|2.570e-7685.48Ras-related protein Rac1 [Phytophthora nicotianae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7606rna7606Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications