rna7572, rna7572 (mRNA) Nannochloropsis gaditana

Overview
Namerna7572
Unique Namerna7572
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length308
Alignment locationCM002472.1:272684..273591 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100582g2.3771.mrna
Orig protein idgnl|cribi|Naga_100582g2.3771
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:272684..273591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100582g2gene7329Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7572rna7572-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23120.1cds7552Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7572 ID=rna7572|Name=rna7572|organism=Nannochloropsis gaditana|type=mRNA|length=308bp
CTCCCCCCTCCTTCTCCTTCTCTCTTGCTGCCCACTGACTCTCGGAAGCG
GGTGATAAGGATGGAAAGAATATTGAGGGGAAAATGTGTTTCATAGCGAG
TGGTGATTTTCGGAATGTAGGCGGAATATATATACCCGACAAGCTGTCTA
TGTGTCAGAAAAGTGTTTATAATGGGGGGTGCTGGGAACATTTGAGGACT
ATTCGCATGCGTGTGTGCAACGCGTGCGAGTGCCGATGCCTTGGGGAGGC
CTGGTGGCCCCTTATCTCAAATAAATGGTTTTAATTTGCCTGAAATGGAG
GGTGTGAG
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protein sequence of rna7572

>rna7572-protein ID=rna7572-protein|Name=rna7572|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MTELQDTLVQAEALRARTSNKDGIPSLPQDIMSLQQRAASVAQAGGGGGM
GDQALLKARTFLPFEQVDGMNRLAYALELKSAFQAAPRATTSTNRGVAGL
GLGDEEERRGRLAPPPDMDLDAYFDFHYSQIVANALEEASDAAEACAHRA
AMRWAEEDWAEATADLLRHQQQKGGGGKELLELALMHQEQPDAMAVASSW
GLNSANALRLARGTSRLTDIQKRYALAVGPAVGDGSEAREEGLAQRLPWM
QPPL
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mRNA from alignment at CM002472.1:272684..273591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7572 ID=rna7572|Name=rna7572|organism=Nannochloropsis gaditana|type=mRNA|length=908bp|location=Sequence derived from alignment at CM002472.1:272684..273591- (Nannochloropsis gaditana)
CGTAGACATGACCGAGCTCCAAGACACTCTGGTTCAAGCTGAGGCGCTGC
GGGCACGCACTAGCAATAAAGATGGCATCCCCAGCCTGCCGCAAGACATC
ATGTCCCTGCAACAACGCGCGGCCTCGGTGGCCCAGGCGGGGGGAGGGGG
GGGAATGGGCGATCAGGCCCTCCTCAAAGCCCGGACCTTTCTTCCCTTCG
AGCAAGTAGACGGGATGAACCGTCTTGCCTACGCGTTGGAGCTGAAAAGC
GCTTTCCAGGCTGCTCCCCGTGCTACGACGTCCACGAATAGGGGCGTCGC
CGGCCTCGGGCTTGGTGACGAAGAGGAAAGAAGAGGCCGTCTGGCCCCTC
CCCCCGACATGGACCTGGATGCCTACTTCGACTTCCACTACTCGCAGATC
GTGGCCAACGCCTTGGAGGAAGCCAGCGACGCGGCCGAGGCGTGCGCGCA
TCGGGCCGCGATGCGGTGGGCGGAAGAAGATTGGGCGGAGGCCACTGCCG
ACTTGCTGCGACACCAGCAACAAAAAGGAGGGGGAGGGAAGGAGCTCTTG
GAGCTTGCCTTGATGCATCAGGAACAGCCGGATGCGATGGCAGTCGCGTC
CTCATGGGGCTTGAATTCCGCCAACGCCTTGCGGTTGGCCCGTGGAACCT
CCCGGTTAACGGATATTCAAAAACGCTACGCCCTGGCCGTGGGGCCCGCG
GTTGGGGACGGGAGCGAAGCGCGGGAAGAAGGATTGGCCCAGCGCCTGGT
GGGCGTGGCGCAAGGCATCAGCTCGGTGGGGGGGCGGGGGGCCGTGCGCG
TGGAGGCACAGGAGGAGTTCCGGCGCACTTTGGAGCTCTTGCGGAGTATG
CTGGAACGGGAACGGGGAGAGCGCTACGTCCCAGCCCTGGATGCAGCCTC
CCCTATGA
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Coding sequence (CDS) from alignment at CM002472.1:272684..273591-

>rna7572 ID=rna7572|Name=rna7572|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002472.1:272684..273591- (Nannochloropsis gaditana)
CCCTGGATGCAGCCTCCCCTATGAATGACCGAGCTCCAAGACACTCTGGT
TCAAGCTGAGGCGCTGCGGGCACGCACTAGCAATAAAGATGGCATCCCCA
GCCTGCCGCAAGACATCATGTCCCTGCAACAACGCGCGGCCTCGGTGGCC
CAGGCGGGGGGAGGGGGGGGAATGGGCGATCAGGCCCTCCTCAAAGCCCG
GACCTTTCTTCCCTTCGAGCAAGTAGACGGGATGAACCGTCTTGCCTACG
CGTTGGAGCTGAAAAGCGCTTTCCAGGCTGCTCCCCGTGCTACGACGTCC
ACGAATAGGGGCGTCGCCGGCCTCGGGCTTGGTGACGAAGAGGAAAGAAG
AGGCCGTCTGGCCCCTCCCCCCGACATGGACCTGGATGCCTACTTCGACT
TCCACTACTCGCAGATCGTGGCCAACGCCTTGGAGGAAGCCAGCGACGCG
GCCGAGGCGTGCGCGCATCGGGCCGCGATGCGGTGGGCGGAAGAAGATTG
GGCGGAGGCCACTGCCGACTTGCTGCGACACCAGCAACAAAAAGGAGGGG
GAGGGAAGGAGCTCTTGGAGCTTGCCTTGATGCATCAGGAACAGCCGGAT
GCGATGGCAGTCGCGTCCTCATGGGGCTTGAATTCCGCCAACGCCTTGCG
GTTGGCCCGTGGAACCTCCCGGTTAACGGATATTCAAAAACGCTACGCCC
TGGCCGTGGGGCCCGCGGTTGGGGACGGGAGCGAAGCGCGGGAAGAAGGA
TTGGCCCAGCGCCTGCCCTGGATGCAGCCTCCCCTATGAATGACCGAGCT
CCAAGACACTCTGGTTCAAGCTGAGGCGCTGCGGGCACGCACTAGCAATA
AAGATGGCATCCCCAGCCTGCCGCAAGACATCATGTCCCTGCAACAACGC
GCGGCCTCGGTGGCCCAGGCGGGGGGAGGGGGGGGAATGGGCGATCAGGC
CCTCCTCAAAGCCCGGACCTTTCTTCCCTTCGAGCAAGTAGACGGGATGA
ACCGTCTTGCCTACGCGTTGGAGCTGAAAAGCGCTTTCCAGGCTGCTCCC
CGTGCTACGACGTCCACGAATAGGGGCGTCGCCGGCCTCGGGCTTGGTGA
CGAAGAGGAAAGAAGAGGCCGTCTGGCCCCTCCCCCCGACATGGACCTGG
ATGCCTACTTCGACTTCCACTACTCGCAGATCGTGGCCAACGCCTTGGAG
GAAGCCAGCGACGCGGCCGAGGCGTGCGCGCATCGGGCCGCGATGCGGTG
GGCGGAAGAAGATTGGGCGGAGGCCACTGCCGACTTGCTGCGACACCAGC
AACAAAAAGGAGGGGGAGGGAAGGAGCTCTTGGAGCTTGCCTTGATGCAT
CAGGAACAGCCGGATGCGATGGCAGTCGCGTCCTCATGGGGCTTGAATTC
CGCCAACGCCTTGCGGTTGGCCCGTGGAACCTCCCGGTTAACGGATATTC
AAAAACGCTACGCCCTGGCCGTGGGGCCCGCGGTTGGGGACGGGAGCGAA
GCGCGGGAAGAAGGATTGGCCCAGCGCCTG
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Synonyms
Publications