rna7539, rna7539 (mRNA) Nannochloropsis gaditana

Overview
Namerna7539
Unique Namerna7539
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length387
Alignment locationCM002472.1:192432..194854 +

Link to JBrowse

Properties
Property NameValue
ProductAldo/keto reductase
Orig transcript idgnl|cribi|Naga_100043g27.7252.mrna
Orig protein idgnl|cribi|Naga_100043g27.7252
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:192432..194854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g27gene7298Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7539rna7539-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23169.1cds7521Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7539 ID=rna7539|Name=rna7539|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
ATGCTCATCCGACCTCGACTTGAACTTCCTGTGAAGTCGCGTCACAACAT
GGAAAGGGGGTACTTCACACACCACACATCGTCTGTATACGTTCAACGAC
TGGGCTGTAACAAGCCCTTGTCCTGTCTGCGAAACTTGAATTTGCCGTTC
GATGTATCATGGCTCCTGGTTAAAAGAGCTGATACTGGGTGGAGGGAGGG
AGGGAGGGAGGTAATCATTTTGACCTGGTTCTCCATGCCTTTTCCCCCAA
AAGAAATAGCCGACTTTCAATGGTTTGATACGCGTAGGTCAACAGGCAAG
GGGTTTTTCTTGGTCTTTGTCAACGATGCGGCCATTAATTTTACTTTCTA
CTTGAGTGAGTCATACCACTTAAAAAGGAATAAGTAA
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protein sequence of rna7539

>rna7539-protein ID=rna7539-protein|Name=rna7539|organism=Nannochloropsis gaditana|type=polypeptide|length=451bp
MAPSSNLRRPSHVICREESEGRESNEDTQPSRNSSMSSSSRHAPDDSALH
VKSPFSGQIGTRCEGGRSWFSMFAAVCLVLLVFDRAPGAEAVNRGLRKRR
SQTPPEPPTSNATTAMDSAITVKLPAVPPFKVGRISVPHSDLTLSRIAYG
SLHFPEFKDNVTGLTAALEACQKVGVTTIDLADVYGWIEDGHGAANDIFA
EALKASPGLRSKLELVTKFGIRLSGGYHIDLSPEWIHESLDRYLTLFDTD
YVDVLMIHNPDPNMDVQAVAQAFKEIKEARKARAFGISNFHQWEYEALRD
AMAAEGLKLSVHEMETSVLHPDRITDDTVSYFSTGENELRILGWGALGGD
PYGGSNLLFGSEGEREKRIVETLALKGQELALEEDAGLGKKQTVTFGPDE
VAVAWLLHHPGNIVPIIGTTAVARLMAQTTPAEKIPFRDLDFDDIMSALH
Y
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mRNA from alignment at CM002472.1:192432..194854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7539 ID=rna7539|Name=rna7539|organism=Nannochloropsis gaditana|type=mRNA|length=2423bp|location=Sequence derived from alignment at CM002472.1:192432..194854+ (Nannochloropsis gaditana)
TACCCCCTTTCCATGTTGTGACGCGACTTCACAGGAAGTTCAAGTCGAGG
TCGGATGAGCATCTGAGAGATGTCATACCCGaacccctccttcacccgtG
GCCCCGTAAATTTGCCCGCAAATAACCGCTGCAGTACCCTCTCGTTATCA
CAAAACAGATTGAAATTAACATCAAAAAGGGCTCACAGAAAGACATGGCA
CCAAGCAGCAACTTGCGGCGGCCTAGCCATGTGATTTGTCGAGAAGagag
tgaagggagggagagcaatgAAGACACTCAGCCTTCGCGCAACAGCTCTA
TGAGCTCGAGTTCCCGTCATGCCCCCGATGACAGTGCTCTACATGTAAAA
AGCCCTTTTAGCGGGCAAATAGGTACGAGATGCGAGGGCGGCAGGTCGTG
GTTCTCGATGTTTGCCGCCGTCTGCCTCGTCCTTTTGGTTTTTGATCGGG
CGCCAGGGGCTGAAGCTGTCAACCGGGGCCTTCGAAAGCGGCGCTCTCAG
ACACCGCCAGAGCCGCCAACTTCAAATGCAACGACAGCTATGGATTCGGC
TATCACTGTCAAGCTGCCAGCGGTACCTCCGTTCAAAGTGGGACGCATTT
CTGTTCCTCATTCGGACCTGACACTCTCTCGCATCGCCTACGGCTCTTTG
CACTTCCCTGAATTTAAGGACAACGTGACGGGCCTGActgcggccttgga
ggcctgcCAAAAAGTTGGCGTGACCACCATAGACCTGGCGGACGTGTATG
GTTGGATTGAGGACGGACACGGCGCTGCTAACGATATATTTGCTGAGGCG
CTCAAGGCCAGCCCAGGTCTGCGCTCTAAGCTGGAGCTTGTAACCAAATT
TGGAATCCGTCTTAGCGGAGGATACCACATCGACCTCTCTCCCGAGTGGA
TCCACGAATCTTTGGATCGGTACCTCACGCTCTTTGACACGGACTATGTG
GACGTGCTCATGATCCACAACCCCGACCCGAACATGGACGTGCAGGCCGT
CGCCCAGGCCTTCAAGGAGATCAAGGAGGCTCGCAAAGCCCGAGCCTTCG
GGATCTCCAACTTCCACCAGTGGGAGTACGAAGCGCTGCGAGACGCCATG
GCGGCGGAGGGTCTGAAGCTCTCGGTGCACGAAATGGAGACCTCCGTGCT
CCACCCCGACCGCATCACCGACGACACCGTCTCGTACTTCTCAACGGGCG
AGAACGAGCTTCGGATCCTGGGATGGGGTGCGCTGGGCGGCGATCCCTAC
GGGGGCTCGAACTTGTTGTTCGGGTCAGAGGGAGAGCGCGAGAAGCGCAT
CGTGGAGACCCTGGCGCTGAAGGGGCAGGAGCtggctctggaggaggatg
cgggcCTTGGAAAGAAGCAAACCGTGACCTTCGGGCCCGACGAGGTAGCG
GTGGCCTGGCTGCTGCACCACCCGGGAAACATCGTGCCCATCATCGGCAC
GACGGCCGTGGCGCGCCTGATGGCGCAGACCACCCCCGCCGAGAAAATCC
CCTTCAGGGATTTGGACTTCGACGACATCATGAGCGCCCTCCACTACTAG
GCCTttgcgggaggggaggaggtggcatATGTAACATTGGTGGACATGAT
CTTTGCGAGACGCGACTGGGCCTGAACGGCGCGTGCATGTAGACAAGCTG
TTCGTCGGAAAGGTTGATGAGTTTGGAGGGTAGCTTGATAGATATGGGAG
GGGGTAACCAAAAGCGTCGCCAGGCTCTTTTCTAGAGTGTTTTGTAACGT
GTGACTCTGAGAGTCCTTATCAACAATCATATGCGGCGTCTAACGGGTCA
GGTGGGGAGATCTCACCTGATCCCTGTAGAGGCTGGGAGTGTTCCAGCCT
CGACCTGTCAGAAGTGGAACTGCgaaagcgggaaaagggCTAGCGTATTA
TGGGTTTTAACCTCAGGGATCAGGAAAATGGAGTGTAGGCGACGGAATTG
GCGGATATAATGCTTTTGGGAAGCGGGACCGAGGTTCCGAAACACATCGG
ACAGCGTTTTCCCGATGGTGGTGGTTGggtcgaggggaaagggcgtaACG
AACAGTTGAAGTGGAGGCGCGCATTCTAAGGTTCCTGATCGCACTCTGTG
ACGCAATACACTTTTCAGGAAAGTGATGGCAGTGTGTTGAAAGGAGTGAA
GCGCCTCTTGATATTCGTGTACGCTCGGGTTTGCTGTAGCGAATGCGGGT
CGGAAAGGCTCCACCATTGTTCGGAATGCGAttagaaagagaaggaggcg
actTTTTCTTCGCGAACAAGTCCGGATGACAAGAGTAAACAAGAAAATAA
TGCTGAACGAAGCATAAGAAAATAATGCTGAACGAAGCATGAGAAACATC
TTGATTGAAAGGCCTCTCAGTTGCAGAGGCGGGCAGCGCTCTGCGTAGTT
AACTTGTTGGTTAAGTCTCTTTC
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Coding sequence (CDS) from alignment at CM002472.1:192432..194854+

>rna7539 ID=rna7539|Name=rna7539|organism=Nannochloropsis gaditana|type=CDS|length=1356bp|location=Sequence derived from alignment at CM002472.1:192432..194854+ (Nannochloropsis gaditana)
ATGGCACCAAGCAGCAACTTGCGGCGGCCTAGCCATGTGATTTGTCGAGA
AGagagtgaagggagggagagcaatgAAGACACTCAGCCTTCGCGCAACA
GCTCTATGAGCTCGAGTTCCCGTCATGCCCCCGATGACAGTGCTCTACAT
GTAAAAAGCCCTTTTAGCGGGCAAATAGGTACGAGATGCGAGGGCGGCAG
GTCGTGGTTCTCGATGTTTGCCGCCGTCTGCCTCGTCCTTTTGGTTTTTG
ATCGGGCGCCAGGGGCTGAAGCTGTCAACCGGGGCCTTCGAAAGCGGCGC
TCTCAGACACCGCCAGAGCCGCCAACTTCAAATGCAACGACAGCTATGGA
TTCGGCTATCACTGTCAAGCTGCCAGCGGTACCTCCGTTCAAAGTGGGAC
GCATTTCTGTTCCTCATTCGGACCTGACACTCTCTCGCATCGCCTACGGC
TCTTTGCACTTCCCTGAATTTAAGGACAACGTGACGGGCCTGActgcggc
cttggaggcctgcCAAAAAGTTGGCGTGACCACCATAGACCTGGCGGACG
TGTATGGTTGGATTGAGGACGGACACGGCGCTGCTAACGATATATTTGCT
GAGGCGCTCAAGGCCAGCCCAGGTCTGCGCTCTAAGCTGGAGCTTGTAAC
CAAATTTGGAATCCGTCTTAGCGGAGGATACCACATCGACCTCTCTCCCG
AGTGGATCCACGAATCTTTGGATCGGTACCTCACGCTCTTTGACACGGAC
TATGTGGACGTGCTCATGATCCACAACCCCGACCCGAACATGGACGTGCA
GGCCGTCGCCCAGGCCTTCAAGGAGATCAAGGAGGCTCGCAAAGCCCGAG
CCTTCGGGATCTCCAACTTCCACCAGTGGGAGTACGAAGCGCTGCGAGAC
GCCATGGCGGCGGAGGGTCTGAAGCTCTCGGTGCACGAAATGGAGACCTC
CGTGCTCCACCCCGACCGCATCACCGACGACACCGTCTCGTACTTCTCAA
CGGGCGAGAACGAGCTTCGGATCCTGGGATGGGGTGCGCTGGGCGGCGAT
CCCTACGGGGGCTCGAACTTGTTGTTCGGGTCAGAGGGAGAGCGCGAGAA
GCGCATCGTGGAGACCCTGGCGCTGAAGGGGCAGGAGCtggctctggagg
aggatgcgggcCTTGGAAAGAAGCAAACCGTGACCTTCGGGCCCGACGAG
GTAGCGGTGGCCTGGCTGCTGCACCACCCGGGAAACATCGTGCCCATCAT
CGGCACGACGGCCGTGGCGCGCCTGATGGCGCAGACCACCCCCGCCGAGA
AAATCCCCTTCAGGGATTTGGACTTCGACGACATCATGAGCGCCCTCCAC
TACTAG
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Synonyms
Publications