rna7515, rna7515 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7515
Unique Name	rna7515
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	264
Alignment location	CM002472.1:137238..139744 -

Link to JBrowse

Properties


Property Name	Value
Product	ig family protein
Orig transcript id	gnl\|cribi\|Naga_100484g1.2347.mrna
Orig protein id	gnl\|cribi\|Naga_100484g1.2347
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:137238..139744 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100484g1	gene7275	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7515	rna7515-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23177.1	cds7497	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:137238..139744-
coding sequence from alignment at CM002472.1:137238..139744-

mRNA sequence

>rna7515 ID=rna7515|Name=rna7515|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGGAGTCTGTCAAAGCCGCGGCGAGCTTTGCCGCCTCCAACCTGACGAA
ACCGTCCTACTACAAGCAGCAGTTCGAGGGGTTCGCCAAGTACTATTACT
GGAAATACATCCGCCCTGGCAGCATCAAGCCGCTCGCACACCTGATGGTG
CTGACCGGGTGCGTGGGCTATGCCGTCGAGTGGTACGCCCTGGGACAGCA
CCACGTGGCGCACAAGAAGGCGATCGTGGACAAGGCCCTGGCGGAGCACG
GGCACGGGCACTAG

protein sequence of rna7515

>rna7515-protein ID=rna7515-protein|Name=rna7515|organism=Nannochloropsis gaditana|type=polypeptide|length=561bp
MTPVPPNPCHDSMQPSAFSMNDFLIPSLHRVENTHVEVNSQDRELALFQP
PTPAGHIATIGTTSALMTQYRPTCPLWGSLKTTMVALVLYGLAKPCNAAA
EGGVRERGQTGKRAEEGGLSTSNAPQRQHVRRHGETIMPHSDPPIYSPAG
TAEIAVEVPDYRILASGDIPGSPERGNGSISLPTLDVSFLHQHALTKGPG
PLALAGNKKNLYAMTAEALLAFSVDPGSGTMEQIQDLQNGVVDRNGKTVE
YFTGLTALALSPDEENVYTVGTSMMPGVGGITVLKRDARGELALVQQLRV
DQRKGIVDVEGMIGANSVAPSPDGRFIYVSSGGYYRDHHLLVFDREPVAG
RLSLLQSIDIYNTSAARVLPSTLAVAPDGKHVYVIGDNFAISTSAIMVYA
VGEDGALELKQEAGPFRSALLTSASFAPSGEFLYCTATFGINLVWVFRRE
PDGQLTTVIDPALNPGGMDVPPTQGSYSSAVAVQHSVLGPLLLVSVEKEN
LVHVALRVEEREGRLAYLGAVGGAGGEGGLKRPDSMAWDAENSVLFVSES
GDNAIAAFRLS

mRNA from alignment at CM002472.1:137238..139744-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7515 ID=rna7515|Name=rna7515|organism=Nannochloropsis gaditana|type=mRNA|length=2507bp|location=Sequence derived from alignment at CM002472.1:137238..139744- (Nannochloropsis gaditana)
GATTTGCGGTGCGCCGTCCGACGAAGGTGACACCATGATATTTGGGTATT
TTTTGAATGCTCTTCATGCTTGTTGTCTGTCACGGCTGACCAGTAGCGCC
TTTACGGGCACTGTGAATACGTCCCTATCGATCTTGCCCCGCCTGTGACG
TACCAACTTCCTCACGGCTGCCCCGAGCCTCGAGACGCGGAGGCCGCTGC
CAGGCGATTACATGACGCCCGTCCCTCCCAACCCATGTCATGATAGCATG
CAGCCATCCGCTTTTTCTATGAATGATTTCCTCATCCCCTCGTTGCACAG
GGTTGAGAACACGCACGTCGAAGTCAACTCGCAGGACCGCGAGCTCGCAT
TGTTCCAGCCCCCTACCCCAGCGGGCCATATTGCGACTATAGGGACGACA
TCCGCTTTAATGACACAGTATCGCCCAACTTGTCCATTATGGGGCTCATT
AAAGACCACAATGGTGGCTCTTGTACTGTATGGCCTTGCAAAGCCTTGCA
ACGCTGCAGCAGAGGGTGGGGTGAGGGAAAGAGGACAGACAGGGAAGCGT
GCTGAGGAAGGGGGGTTGAGCACCAGCAACGCCCCCCAACGACAGCACGT
TCGTCGGCACGGGGAGACAATAATGCCACATTCTGATCCACCAATATACT
CTCCCGCGGGCACCGCCGAAATCGCAGTCGAAGTACCAGACTACCGGATA
CTTGCCTCGGGGGACATCCCCGGCAGCCCCGAAAGGGGCAACGGCAGCAT
CTCCCTCCCCACCCTGGACGTCTCCTTTCTCCACCAGCATGCCTTGACCA
AAGGTCCGGGTCCGCTGGCCTTGGCCGGGAATAAGAAGAACCTGTACGCG
ATGACCGCGGAAGCCTTGCTGGCCTTCAGCGTGGACCCCGGGAGCGGGAC
GATGGAGCAGATCCAGGACCTGCAGAACGGGGTGGTGGACCGGAATGGGA
AGACGGTCGAGTACTTCACGGGCCTGACCGCGCTGGCCCTGTCGCCGGAT
GAGGAGAACGTGTACACGGTGGGCACGAGCATGATGCCGGGCGTGGGCGG
GATCACGGTCTTGAAGAGGGACGCGCGGGGGGAGCTCGCCCTTGTCCAAC
AGCTTCGCGTCGATCAACGCAAAGGCATAGTGGACGTGGAGGGCATGATC
GGCGCCAACTCAGTCGCGCCCTCGCCGGACGGGCGCTTCATCTACGTGTC
CTCGGGAGGCTACTACCGGGACCACCACCTCCTGGTCTTCGACCGCGAAC
CTGTGGCGGGCCGCCTCAGCCTCCTCCAGAGCATCGACATCTACAACACT
TCCGCCGCCCGGGTCCTGCCCTCCACCCTGGCCGTGGCCCCGGACGGCAA
GCACGTGTACGTCATCGGCGACAACTTCGCCATCTCCACCAGCGCCATCA
TGGTCTACGCGGTGGGCGAGGACGGGGCGCTGGAGCTCAAGCAGGAGGCC
GGGCCCTTCCGATCCGCGTTGCTCACCTCCGCCTCCTTCGCCCCCTCCGG
CGAATTCCTCTACTGCACCGCCACCTTCGGTACGGCGTCCGTTTGGCTCT
CGCCCTCTGTCTTTCCCCTCTCCTTCCCTCCCCCCGTCCCTCCTCCCGCG
TACAATCCAACGCCCCCACGCTCACCCCCCGACCTGTGCCCCCACCCCTC
ACAGGCATCAACCTAGTCTGGGTCTTCCGGCGCGAGCCAGACGGGCAGCT
GACCACCGTCATCGACCCGGCGCTCAATCCGGGGGGCATGGACGTGCCCC
CCACCCAAGGCTCGTACTCCTCGGCCGTGGCCGTCCAGCATTCGGTGCTG
GGGCCGCTGCTGTTGGTGAGCGTGGAGAAGGAGAATCTGGTGCATGTGGC
CCTGAGGGTGGAGGAGCGGGAGGGGCGGCTGGCCTATCTGGGGGCGGTGG
GGGGGGCTGGGGGCGAGGGGGGCTTGAAGCGCCCGGACTCGATGGCGTGG
GACGCGGAGAACAGCGTCCTGTTTGTGAGCGAGTCGGGCGACAATGCCAT
AGCCGCCTTCAGGTTGAGCTAGCGGGGAGGAAGGGGGCGAACGGGGGGGT
CAGGGGGGCAGCGGTGAGACGAGGGCGGGCCGGGAGAGAGGGCAAGGGGG
GAGGAAGAACGTCGACTGCGAGATTGGCTGTATGGGGGCGCGAGAGGTAG
ATTGAGATTTGGCATGGGGCGGGCGGGGGCGTGCGCTGTCACAGAGTCTT
GGAGGTCTGTGGGCTCACTCGCTCCGCGCGCGCTTTGTATCTAGGTGGAG
GAGAGGGGGAGAGGAGGGCTTCTCCCCATCGGGGCCTCCTGGATGAGAAG
TGAACGGGGCAGGTGACGGGAAGCTTCGGGAGAGAGGACGAGCGCGATTC
CGGCAAAGGACAGAGGACCGGGCCCCAGAGAGTCTGGGCGGAAGTAATGC
ATGTGCGCAAACGACTGAGACTGCAATAATTCAGACCCATCCAGCACGAG
TGACTGAGTGACCGCTATCAAGCTAAAGAATTCTATACCATAGATTGAGC
AGCCCGA

Coding sequence (CDS) from alignment at CM002472.1:137238..139744-

>rna7515 ID=rna7515|Name=rna7515|organism=Nannochloropsis gaditana|type=CDS|length=3372bp|location=Sequence derived from alignment at CM002472.1:137238..139744- (Nannochloropsis gaditana)
GCATCAACCTAGTCTGGGTCTTCCGGCGCGAGCCAGACGGGCAGCTGACC
ACCGTCATCGACCCGGCGCTCAATCCGGGGGGCATGGACGTGCCCCCCAC
CCAAGGCTCGTACTCCTCGGCCGTGGCCGTCCAGCATTCGGTGCTGGGGC
CGCTGCTGTTGGTGAGCGTGGAGAAGGAGAATCTGGTGCATGTGGCCCTG
AGGGTGGAGGAGCGGGAGGGGCGGCTGGCCTATCTGGGGGCGGTGGGGGG
GGCTGGGGGCGAGGGGGGCTTGAAGCGCCCGGACTCGATGGCGTGGGACG
CGGAGAACAGCGTCCTGTTTGTGAGCGAGTCGGGCGACAATGCCATAGCC
GCCTTCAGGTTGAGCTAGATGACGCCCGTCCCTCCCAACCCATGTCATGA
TAGCATGCAGCCATCCGCTTTTTCTATGAATGATTTCCTCATCCCCTCGT
TGCACAGGGTTGAGAACACGCACGTCGAAGTCAACTCGCAGGACCGCGAG
CTCGCATTGTTCCAGCCCCCTACCCCAGCGGGCCATATTGCGACTATAGG
GACGACATCCGCTTTAATGACACAGTATCGCCCAACTTGTCCATTATGGG
GCTCATTAAAGACCACAATGGTGGCTCTTGTACTGTATGGCCTTGCAAAG
CCTTGCAACGCTGCAGCAGAGGGTGGGGTGAGGGAAAGAGGACAGACAGG
GAAGCGTGCTGAGGAAGGGGGGTTGAGCACCAGCAACGCCCCCCAACGAC
AGCACGTTCGTCGGCACGGGGAGACAATAATGCCACATTCTGATCCACCA
ATATACTCTCCCGCGGGCACCGCCGAAATCGCAGTCGAAGTACCAGACTA
CCGGATACTTGCCTCGGGGGACATCCCCGGCAGCCCCGAAAGGGGCAACG
GCAGCATCTCCCTCCCCACCCTGGACGTCTCCTTTCTCCACCAGCATGCC
TTGACCAAAGGTCCGGGTCCGCTGGCCTTGGCCGGGAATAAGAAGAACCT
GTACGCGATGACCGCGGAAGCCTTGCTGGCCTTCAGCGTGGACCCCGGGA
GCGGGACGATGGAGCAGATCCAGGACCTGCAGAACGGGGTGGTGGACCGG
AATGGGAAGACGGTCGAGTACTTCACGGGCCTGACCGCGCTGGCCCTGTC
GCCGGATGAGGAGAACGTGTACACGGTGGGCACGAGCATGATGCCGGGCG
TGGGCGGGATCACGGTCTTGAAGAGGGACGCGCGGGGGGAGCTCGCCCTT
GTCCAACAGCTTCGCGTCGATCAACGCAAAGGCATAGTGGACGTGGAGGG
CATGATCGGCGCCAACTCAGTCGCGCCCTCGCCGGACGGGCGCTTCATCT
ACGTGTCCTCGGGAGGCTACTACCGGGACCACCACCTCCTGGTCTTCGAC
CGCGAACCTGTGGCGGGCCGCCTCAGCCTCCTCCAGAGCATCGACATCTA
CAACACTTCCGCCGCCCGGGTCCTGCCCTCCACCCTGGCCGTGGCCCCGG
ACGGCAAGCACGTGTACGTCATCGGCGACAACTTCGCCATCTCCACCAGC
GCCATCATGGTCTACGCGGTGGGCGAGGACGGGGCGCTGGAGCTCAAGCA
GGAGGCCGGGCCCTTCCGATCCGCGTTGCTCACCTCCGCCTCCTTCGCCC
CCTCCGGCGAATTCCTCTACTGCACCGCCACCTTCGGCATCAACCTAGTC
TGGGTCTTCCGGCGCGAGCCAGACGGGCAGCTGACCACCGTCATCGACCC
GGCGCTCAATCCGGGGGGCATGGACGTGCCCCCCACCCAAGGCTCGTACT
CCTCGGCCGTGGCCGTCCAGCATTCGGTGCTGGGGCCGCTGCTGTTGGTG
AGCGTGGAGAAGGAGAATCTGGTGCATGTGGCCCTGAGGGTGGAGGAGCG
GGAGGGGCGGCTGGCCTATCTGGGGGCGGTGGGGGGGGCTGGGGGCGAGG
GGGGCTTGAAGCGCCCGGACTCGATGGCGTGGGACGCGGAGAACAGCGTC
CTGTTTGTGAGCGAGTCGGGCGACAATGCCATAGCCGCCTTCAGGTTGAG
CTAGATGACGCCCGTCCCTCCCAACCCATGTCATGATAGCATGCAGCCAT
CCGCTTTTTCTATGAATGATTTCCTCATCCCCTCGTTGCACAGGGTTGAG
AACACGCACGTCGAAGTCAACTCGCAGGACCGCGAGCTCGCATTGTTCCA
GCCCCCTACCCCAGCGGGCCATATTGCGACTATAGGGACGACATCCGCTT
TAATGACACAGTATCGCCCAACTTGTCCATTATGGGGCTCATTAAAGACC
ACAATGGTGGCTCTTGTACTGTATGGCCTTGCAAAGCCTTGCAACGCTGC
AGCAGAGGGTGGGGTGAGGGAAAGAGGACAGACAGGGAAGCGTGCTGAGG
AAGGGGGGTTGAGCACCAGCAACGCCCCCCAACGACAGCACGTTCGTCGG
CACGGGGAGACAATAATGCCACATTCTGATCCACCAATATACTCTCCCGC
GGGCACCGCCGAAATCGCAGTCGAAGTACCAGACTACCGGATACTTGCCT
CGGGGGACATCCCCGGCAGCCCCGAAAGGGGCAACGGCAGCATCTCCCTC
CCCACCCTGGACGTCTCCTTTCTCCACCAGCATGCCTTGACCAAAGGTCC
GGGTCCGCTGGCCTTGGCCGGGAATAAGAAGAACCTGTACGCGATGACCG
CGGAAGCCTTGCTGGCCTTCAGCGTGGACCCCGGGAGCGGGACGATGGAG
CAGATCCAGGACCTGCAGAACGGGGTGGTGGACCGGAATGGGAAGACGGT
CGAGTACTTCACGGGCCTGACCGCGCTGGCCCTGTCGCCGGATGAGGAGA
ACGTGTACACGGTGGGCACGAGCATGATGCCGGGCGTGGGCGGGATCACG
GTCTTGAAGAGGGACGCGCGGGGGGAGCTCGCCCTTGTCCAACAGCTTCG
CGTCGATCAACGCAAAGGCATAGTGGACGTGGAGGGCATGATCGGCGCCA
ACTCAGTCGCGCCCTCGCCGGACGGGCGCTTCATCTACGTGTCCTCGGGA
GGCTACTACCGGGACCACCACCTCCTGGTCTTCGACCGCGAACCTGTGGC
GGGCCGCCTCAGCCTCCTCCAGAGCATCGACATCTACAACACTTCCGCCG
CCCGGGTCCTGCCCTCCACCCTGGCCGTGGCCCCGGACGGCAAGCACGTG
TACGTCATCGGCGACAACTTCGCCATCTCCACCAGCGCCATCATGGTCTA
CGCGGTGGGCGAGGACGGGGCGCTGGAGCTCAAGCAGGAGGCCGGGCCCT
TCCGATCCGCGTTGCTCACCTCCGCCTCCTTCGCCCCCTCCGGCGAATTC
CTCTACTGCACCGCCACCTTCG

Synonyms

Publications