EWM23237.1, cds7436 (CDS) Nannochloropsis gaditana

Overview
NameEWM23237.1
Unique Namecds7436
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:636799..637108 -
Alignment locationCM002471.1:635916..636401 -
Alignment locationCM002471.1:635745..635794 -
Alignment locationCM002471.1:635310..635444 -
Alignment locationCM002471.1:634801..634923 -
Alignment locationCM002471.1:634407..634500 -
Alignment locationCM002471.1:633835..633935 -
Alignment locationCM002471.1:633530..633595 -
Alignment locationCM002471.1:633194..633313 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23237.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100917g1.10004.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:636799..637108 -
CM002471.1supercontigCM002471.1:635916..636401 -
CM002471.1supercontigCM002471.1:635745..635794 -
CM002471.1supercontigCM002471.1:635310..635444 -
CM002471.1supercontigCM002471.1:634801..634923 -
CM002471.1supercontigCM002471.1:634407..634500 -
CM002471.1supercontigCM002471.1:633835..633935 -
CM002471.1supercontigCM002471.1:633530..633595 -
CM002471.1supercontigCM002471.1:633194..633313 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|585104187|gb|EWM23237.1| (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana])

HSP 1 Score: 998.423 bits (2580), Expect = 0.000e+0
Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0
Query:    1 MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494
            MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG
Sbjct:    1 MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494          
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|553193075|ref|XP_005855705.1| (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >gi|422293357|gb|EKU20657.1| hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 425.631 bits (1093), Expect = 3.376e-143
Identity = 238/255 (93.33%), Postives = 240/255 (94.12%), Query Frame = 0
Query:  144 RVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVP--------SLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 390
            R   QPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTE          S + +ALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK
Sbjct:  138 RSSNQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEATTQAQELRLSNLEKALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 392          
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|585106649|gb|EWM25014.1| (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana])

HSP 1 Score: 125.946 bits (315), Expect = 4.795e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 0
Query:  320 SRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALL 424
            SR K L ++P   ++AL+  LS +PAW  RITKEKLE LGG V+   SPVL    R++ +  YAPK++HI+C+ C K+F GKNALRNFELHAIFW LY +HPA++
Sbjct:  367 SRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIV 469          

HSP 2 Score: 95.1301 bits (235), Expect = 5.235e-17
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0
Query:  427 STQADSKVEKEHGGL-YPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIP 492
            + +A ++V + H  L YPCNS+ARDVVV+ME+RKPVLCNNQ+K++ L+G L HDT+ FQ RAWLQIP
Sbjct:  535 AVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIP 601          
The following BLAST results are available for this feature:
BLAST of EWM23237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104187|gb|EWM23237.1|0.000e+0100.00hypothetical protein Naga_100917g1 [Nannochloropsi... [more]
gi|553193075|ref|XP_005855705.1|3.376e-14393.33hypothetical protein NGA_0645600, partial [Nannoch... [more]
gi|585106649|gb|EWM25014.1|4.795e-2756.19hypothetical protein Naga_100068g20 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7454rna7454Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications