EWM23237.1, cds7436 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|585104187|gb|EWM23237.1| (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana]) HSP 1 Score: 998.423 bits (2580), Expect = 0.000e+0 Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0 Query: 1 MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494 MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG Sbjct: 1 MAQMSASLKSEAVPVPSQPPPPPPLPIHYGRTEQQPHMRPKPCHHRTPSPPHALPHHPDPHLPQPHQQQRPLPRWEQSLASLGHDPSFSQPQASELLHRAVIEPTQRSTAIATIHYSMAGPLPPSLPPTLPLSTPSSGPAYPHRVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|553193075|ref|XP_005855705.1| (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >gi|422293357|gb|EKU20657.1| hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 425.631 bits (1093), Expect = 3.376e-143 Identity = 238/255 (93.33%), Postives = 240/255 (94.12%), Query Frame = 0 Query: 144 RVHQQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEVP--------SLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 390 R QPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTE S + +ALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK Sbjct: 138 RSSNQPWNSSSFLQRDHSHAHSSRGEAQPQRLHPPGAFQTQQPLPPPHPSHTAAASGGPVRPVSTPGHAEWQHVDPSWLKPDPASSPPSTAASSLFPSLSLLPPPYHQANHPRAGAGTPGERGAGDKADTYSFGEESFQDFQSPDAPFEAFSFPGNAKGGGDDETKGPNASTAEWSSRSKKLTEATTQAQELRLSNLEKALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 392
BLAST of EWM23237.1 vs. NCBI_GenBank
Match: gi|585106649|gb|EWM25014.1| (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana]) HSP 1 Score: 125.946 bits (315), Expect = 4.795e-27 Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 0 Query: 320 SRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALL 424 SR K L ++P ++AL+ LS +PAW RITKEKLE LGG V+ SPVL R++ + YAPK++HI+C+ C K+F GKNALRNFELHAIFW LY +HPA++ Sbjct: 367 SRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIV 469 HSP 2 Score: 95.1301 bits (235), Expect = 5.235e-17 Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0 Query: 427 STQADSKVEKEHGGL-YPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIP 492 + +A ++V + H L YPCNS+ARDVVV+ME+RKPVLCNNQ+K++ L+G L HDT+ FQ RAWLQIP Sbjct: 535 AVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIP 601 The following BLAST results are available for this feature:
BLAST of EWM23237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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