rna7439, rna7439 (mRNA) Nannochloropsis gaditana

Overview
Namerna7439
Unique Namerna7439
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length573
Alignment locationCM002471.1:587914..588395 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101285g1.9012.mrna
Orig protein idgnl|cribi|Naga_101285g1.9012
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:587914..588395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101285g1gene7197Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23252.1cds7421Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7439rna7439-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7439 ID=rna7439|Name=rna7439|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
AACTACTCGTACTTTTTTTCCTGTAGCAGAGGAAGAGGATTCTCGCCGTC
CCACACTTCTATCGATCTTGCTCGTTGTTCTCTCCCCTTGCTGACATGTC
AGATAACCCGCTTACCTTGTTTTTCCCTTTTCTAGAGAAACTCATGGCGC
ACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGCTCGCC
ACGACTTTGTTGGTCTCTCTTGCTCTTCTCCCTCTTGCCGCTGGTTTCCT
ACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGGGCGTTGACAG
ACACAGGCAAGAGCAGGACGGGGGAAAGGTCGCTTGCCCCGTTGGGGCGG
CCTCGGTATCTGGGAGTGCGGGTCAAGGGAGGGACGGAGGATGACGACCG
GGAGCTCGCCGCCGAATTTTCCCGGAGGCTGGAGGATGAGGAGGAGTCCC
TCCCCCGTGTTCCGATCCGCAAATCTTCCTCCCCTTCTCCCGGCGGGGGC
GTCCCTCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAGACTCA
AAGCTACAACAAGGAGGACGGTA
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protein sequence of rna7439

>rna7439-protein ID=rna7439-protein|Name=rna7439|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MDPETRSPSFHDSSSYFLGHPGQPRRKKGAIHVKSTAWTLGQGPPWMRAQ
TPTVEFRRVSLFLLFLYISLIHAVTPQAFHAPWRPCFTWRSCRLLPGCFS
SSSSLFSSSSSSPSHIFSPV
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mRNA from alignment at CM002471.1:587914..588395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7439 ID=rna7439|Name=rna7439|organism=Nannochloropsis gaditana|type=mRNA|length=482bp|location=Sequence derived from alignment at CM002471.1:587914..588395- (Nannochloropsis gaditana)
AGGTAAATTTCCCTCCTAATTGAACAATTTTGACTTCACACCACCAGGCA
GGGATGGTTTTGGAGTTTGACTAAACGTTGGATGCTGTTGCGTGTCTCAG
TCGCGATGCCGTCCTGGAGTCATGGACCCTGAAACTCGATCGCCTTCGTT
CCACGACTCAAGCTCCTATTTTCTGGGACATCCTGGTCAGCCAAGGAGGA
AGAAGGGTGCAATCCATGTTAAAAGCACGGCCTGGACGTTGGGGCAGGGG
CCACCTTGGATGCGGGCCCAGACCCCGACCGTTGAATTCCGCCGGGTCAG
CCTCTTCCTTCTCTTCCTGTATATCTCCTTGATCCACGCTGTGACTCCTC
AGGCCTTCCATGCACCATGGCGCCCGTGTTTTACGTGGCGGTCTTGTCGA
CTACTTCCTGGCTGCTTCTCCTCCTCCTCCTCCCTCTTCTCCTCCTCCTC
CTCTTCCCCTTCCCACATTTTCTCTCCCGTCT
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Coding sequence (CDS) from alignment at CM002471.1:587914..588395-

>rna7439 ID=rna7439|Name=rna7439|organism=Nannochloropsis gaditana|type=CDS|length=361bp|location=Sequence derived from alignment at CM002471.1:587914..588395- (Nannochloropsis gaditana)
ATGGACCCTGAAACTCGATCGCCTTCGTTCCACGACTCAAGCTCCTATTT
TCTGGGACATCCTGGTCAGCCAAGGAGGAAGAAGGGTGCAATCCATGTTA
AAAGCACGGCCTGGACGTTGGGGCAGGGGCCACCTTGGATGCGGGCCCAG
ACCCCGACCGTTGAATTCCGCCGGGTCAGCCTCTTCCTTCTCTTCCTGTA
TATCTCCTTGATCCACGCTGTGACTCCTCAGGCCTTCCATGCACCATGGC
GCCCGTGTTTTACGTGGCGGTCTTGTCGACTACTTCCTGGCTGCTTCTCC
TCCTCCTCCTCCCTCTTCTCCTCCTCCTCCTCTTCCCCTTCCCACATTTT
CTCTCCCGTCT
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Synonyms
Publications