EWM23255.1, cds7417 (CDS) Nannochloropsis gaditana

Overview
NameEWM23255.1
Unique Namecds7417
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:577002..577059 +
Alignment locationCM002471.1:577298..577383 +
Alignment locationCM002471.1:577605..577709 +
Alignment locationCM002471.1:577812..578003 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23255.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100460g1.10047.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:577002..577059 +
CM002471.1supercontigCM002471.1:577298..577383 +
CM002471.1supercontigCM002471.1:577605..577709 +
CM002471.1supercontigCM002471.1:577812..578003 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|585104233|gb|EWM23255.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 294.664 bits (753), Expect = 4.838e-101
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MRTAGTEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS 146
            MRTAGTEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS
Sbjct:    1 MRTAGTEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS 146          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|553177491|ref|XP_005852470.1| (hypothetical protein NGA_0727000 [Nannochloropsis gaditana CCMP526] >gi|422296063|gb|EKU23362.1| hypothetical protein NGA_0727000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 254.218 bits (648), Expect = 1.712e-83
Identity = 142/197 (72.08%), Postives = 142/197 (72.08%), Query Frame = 0
Query:    1 MRTAGTEIQAGDIKSIDANG---------------------------------------------------AKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS 146
            MRTAGTEIQAGDIKSIDANG                                                   AKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKE    RRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS
Sbjct:   58 MRTAGTEIQAGDIKSIDANGQEGEREGGREGGREGGRGAKGAGEQAHVLAWPFQWLDCVRAPSLLVCAYSGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKE----RRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRANTAAGVSDEEAGGGGGGDGPS 250          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|298706347|emb|CBJ29356.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.6481 bits (200), Expect = 1.671e-16
Identity = 46/127 (36.22%), Postives = 76/127 (59.84%), Query Frame = 0
Query:    7 EIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPR--------NMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRA 125
            EI   DIK+++  G+ S+ + SKTGD+LLE+EA   + RD W+ +L  V         ED  +  Q R         MK++A+++ +  +R  +++  +K  EA+KA+++KE GG++YTAL MA R+
Sbjct:   82 EIDLNDIKTVEPKGSASLVMSSKTGDLLLELEAENGSVRDSWVESLQAV--------AEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 200          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|813156558|ref|XP_012201628.1| (hypothetical protein SPRG_20398 [Saprolegnia parasitica CBS 223.65] >gi|641533787|gb|KDO27760.1| hypothetical protein SPRG_20398 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.5514 bits (166), Expect = 1.772e-11
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 0
Query:    7 EIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQP-------RNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRAN 126
            EI+ G IK++   G  S  +LS  GDVLLE+EA     R+ W+TAL  V          +G  +  P       + +K++A K+ Y+ +RQ+  ELK++  EA++ K    A G+KYTA+ MA R +
Sbjct:   72 EIEVGAIKAVTPVGTTSFQILSMQGDVLLELEAESADMRNAWVTALQFVCEQVQSEQEANGSNKKGPATPTSLKQMVKDQAAKQAYWHKRQQ--ELKQREIEAEERKKKVGANGMKYTAIAMANRTS 196          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|1173951978|gb|OQR99743.1| (hypothetical protein ACHHYP_04650 [Achlya hypogyna])

HSP 1 Score: 67.781 bits (164), Expect = 3.127e-11
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 0
Query:    7 EIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQP-------RNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRA 125
            EI+ G IK++   G  S  +LS  GDVLLE++A     R  W+TAL  V     K    +G  +  P       + +K++A K+ Y+ +RQ+  ELK++  EA++ K      G+KYTA+ MA R+
Sbjct:   70 EIEVGGIKAVLPQGPSSFQLLSMQGDVLLELDAESAELRTQWVTALQFVCEEVQKEQEANGTTKKAPVTPSSLKQMVKDQANKQAYWHKRQQ--ELKQREAEAEERKKKVGVAGMKYTAIAMANRS 193          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|567971482|gb|ETK96490.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567999812|gb|ETL49846.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570961517|gb|ETP26496.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 66.6254 bits (161), Expect = 3.788e-11
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0
Query:    6 TEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLL-HNFKVMGEDGVVRG-QPRNMKE-RAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAG-GLKYTALHMAGRANTAA 129
            T+I+   +  I A G    T++S+ GD LL++EA  E  RD W+T L  V    N     E+ V  G + R M E RA+K+ Y+ +R +++E +++  E +K KF   AG G+KYTAL MA R + ++
Sbjct:   31 TKIELHTVNLIQAQGKIGFTIISQKGDTLLDVEADSEEIRDTWVTHLQMVCEDSNPDDETEEEVQSGLKFRKMVEDRAKKQAYWAKRTQELEQRKQEAEERKKKF---AGVGMKYTALAMANRPDPSS 155          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|567971481|gb|ETK96489.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567999811|gb|ETL49845.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570961516|gb|ETP26495.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0
Query:    6 TEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLL-HNFKVMGEDGVVRG-QPRNMKE-RAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAG-GLKYTALHMAGRANTAA 129
            T+I+   +  I A G    T++S+ GD LL++EA  E  RD W+T L  V    N     E+ V  G + R M E RA+K+ Y+ +R +++E +++  E +K KF   AG G+KYTAL MA R + ++
Sbjct:   45 TKIELHTVNLIQAQGKIGFTIISQKGDTLLDVEADSEEIRDTWVTHLQMVCEDSNPDDETEEEVQSGLKFRKMVEDRAKKQAYWAKRTQELEQRKQEAEERKKKF---AGVGMKYTALAMANRPDPSS 169          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|567971480|gb|ETK96488.1| (hypothetical protein L915_00832 [Phytophthora parasitica] >gi|567999810|gb|ETL49844.1| hypothetical protein L916_00822 [Phytophthora parasitica] >gi|570961515|gb|ETP26494.1| hypothetical protein F441_00867 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 66.6254 bits (161), Expect = 8.926e-11
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0
Query:    6 TEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLL-HNFKVMGEDGVVRG-QPRNMKE-RAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAG-GLKYTALHMAGRANTAA 129
            T+I+   +  I A G    T++S+ GD LL++EA  E  RD W+T L  V    N     E+ V  G + R M E RA+K+ Y+ +R +++E +++  E +K KF   AG G+KYTAL MA R + ++
Sbjct:   69 TKIELHTVNLIQAQGKIGFTIISQKGDTLLDVEADSEEIRDTWVTHLQMVCEDSNPDDETEEEVQSGLKFRKMVEDRAKKQAYWAKRTQELEQRKQEAEERKKKF---AGVGMKYTALAMANRPDPSS 193          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|675163217|ref|XP_008890493.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566033747|gb|ETI56658.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568028981|gb|ETM02915.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568059569|gb|ETM56144.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568109822|gb|ETN24429.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570998166|gb|ETP54424.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 65.4698 bits (158), Expect = 1.164e-10
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 0
Query:    6 TEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLL-HNFKVMGEDGVVRG-QPRNMKE-RAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAG-GLKYTALHMAGRANTAA 129
            T+I+   +  I A G    T+ S+ GD LL++EA  E  RD W+T L  V    N     E+ V  G + R M E RA+K+ Y+ +R +++E +++  E +K KF   AG G+KYTAL MA R + ++
Sbjct:   31 TKIELHTVNLIQAQGKIGFTITSQKGDTLLDVEADSEEIRDTWVTHLQMVCEDSNPDDETEEEVQSGLKFRKMVEDRAKKQAYWAKRTQELEQRKQEAEERKKKF---AGVGMKYTALAMANRPDPSS 155          
BLAST of EWM23255.1 vs. NCBI_GenBank
Match: gi|570337456|gb|ETO85404.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 65.0846 bits (157), Expect = 1.796e-10
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 0
Query:    6 TEIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLL-HNFKVMGEDGVVRG-QPRNMKE-RAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAG-GLKYTALHMAGRANTAA 129
            T+I+   +  I A G    T+ S+ GD LL++EA  E  RD W+T L  V    N     E+ V  G + R M E RA+K+ Y+ +R +++E +++  E +K KF   AG G+KYTAL MA R + ++
Sbjct:   31 TKIELHTVNLIQAQGKIGFTITSQKGDTLLDVEADSEEIRDTWVTHLQMVCEDSNPDGETEEEVQSGLKFRKMVEDRAKKQAYWAKRTQELEQRKQEAEERKKKF---AGVGMKYTALAMANRPDPSS 155          
The following BLAST results are available for this feature:
BLAST of EWM23255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104233|gb|EWM23255.1|4.838e-101100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|553177491|ref|XP_005852470.1|1.712e-8372.08hypothetical protein NGA_0727000 [Nannochloropsis ... [more]
gi|298706347|emb|CBJ29356.1|1.671e-1636.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|813156558|ref|XP_012201628.1|1.772e-1136.22hypothetical protein SPRG_20398 [Saprolegnia paras... [more]
gi|1173951978|gb|OQR99743.1|3.127e-1135.71hypothetical protein ACHHYP_04650 [Achlya hypogyna... [more]
gi|567971482|gb|ETK96490.1|3.788e-1137.50hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567971481|gb|ETK96489.1|6.031e-1137.50hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567971480|gb|ETK96488.1|8.926e-1137.50hypothetical protein L915_00832 [Phytophthora para... [more]
gi|675163217|ref|XP_008890493.1|1.164e-1037.50hypothetical protein, variant 2 [Phytophthora para... [more]
gi|570337456|gb|ETO85404.1|1.796e-1037.50hypothetical protein, variant 2 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7435rna7435Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications