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Properties
Property Name | Value |
Product | transcriptional regulator |
Orig transcript id | gnl|cribi|Naga_100181g6.3852.mrna |
Orig protein id | gnl|cribi|Naga_100181g6.3852 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002471.1 | supercontig | CM002471.1:513976..515849 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp AGGGCGAGCGGGAGGGTGGGAAGGAAGGAAACAGGGAGAAAGATAAAGTG TCGCTCCCTGAGGCGTTGGTCAAGAGGCTGCTGGGAAAGGGATGGGGCCC TAGAGGGCCGATAATCTGGAGGGAGGTGGACGAGATCCTGGGCGGGTGGG GGGAAGGCGGGAGGGAGGAGGGGAGGGAGGGAGGAAGGGAGGAAGGAAAG GCGCTCCCCGGGGGGAGAACGGTCCTCCTCGTCTTTCAAGCTTAGCAATC TCGACAGGTATAGAGTGCAAAAAGCGTGGCGGGTCTGGTGGAGGAAAGAG CAGAAACGTCATACGGACCACGCCTGGAGGCCGCCCTACCCCCTTCCTCC CCCCCTTCCTCACCCCGTCCTGCCTCCCCCCCTGGAGAGCCTCAGAATAG ACATGGGAGGCATCTTGGCGGATGGGGGTATCTTTCCTGACTGTTATATT GCCTGCGAAGCCAATGGGGGAAGGGAAGGAGGGAAAGAGGGAGGGCGGGA AGGAGGGAGCGTCGCATGTGCCGCGCATCGAAGCATTTTGGCAGCGAGGT CAGAACGGATGGCGGCTCACTTTCGTTTTGCGGAGATGGGAGAGGGCGAG AAGGAGGGGACGCCCACGTTCGTATTCCCGTCGCTCTCTGCAAGCACGCT CAAACCCTTCTTGACATATCTATACACGGGGCGCCTGCCGGAGTTGGAGG AGGGGAGGGAGGAGGGAGGGGAGAAGTCGGGGAGGTGGAGGACAGAGACG CTGATGGAGCTCGCTGTGGTGGCGGATGAATTTTTGCTCCCTGGCCTCGT TCGCGAGTGCGAGTGGGAGCTCTGTTTAAGTCAGGACTACATTAAGGGGG AGGGTACAGAAGAGACAGGGGCCGACGCAGAGGTGGAAGCGGCGGCGCGT CTCTTTAAACTCACAAACTTGTTGCCAGGAATGAGCTTGTTGAGAGCTCA ATCGGCTTTGAGACTTGTCAAGGGGTGTAAGTATGTGTTGCAGGGAATGG GGGAAGGAGGATGTCAAGATGGGGAAGACGAGGGCGAGGTATTGCTCAAA GAGGCCATTGACTGTTTGATGGACAAATAAGCGCGAGGGCACCCAGAAAT TACCAACTGTGTAAATTATAATGTAACGAATAATTTTAAGAGTAAGGAAA GCATTAATTTGAAACTTTTCC back to topprotein sequence of rna7409 >rna7409-protein ID=rna7409-protein|Name=rna7409|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp MRLYAHVARRLMEERGSLGEDEKERSQAEGTAATSFPTSSPPSFPPYLQK WLETYASTEFEASALATESLLDSEVEKEKVKRRNNRRKKHHEGQGKGGKE DEKEEEEEEEEEEEEEEEEEEERRLFALYGEAMELEYAFFAEQWQESQEW RGLDPSVLITDFDGTCTLADTTHLLARAAGHFQSPASTAEQWRRLEEGYL SQLSGVLDPLLTGLPPSVPPSLPPSQPEAKDLGGAAAFLAPLDAFDIKAV AAVSDSRILKGIDLSLLPALLTSSSPMPSFSPPPSSLPSSFAAALALRPY CATTLRYAADRSSSPSSSSLFHVLSVSWSSFLITAATGLSPAKVTCNHLV EEVGSDGRLLTTGAIEVKVGGPGGKLGHFQRLLQGAEAGPEGGGQKGRGR SSPSVFIGDSVTDVLALMAADVGIVVGESGTLRRMLRRFGWKIRGLVAFP VKKEERGKASRVVYAAEDWAEIAAFLYGTDLVKKMVEEGRRNKGNTYCGE back to topmRNA from alignment at CM002471.1:513976..515849+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp|location=Sequence derived from alignment at CM002471.1:513976..515849+ (Nannochloropsis gaditana) ATGCGCCTTTACGCCCATGTTGCCCGTCgattgatggaggagagaggctc
cctcggcgaggacgagaaggaacgATCGCAGGCTGAGGGCACCGCGGcga
cttccttccctacctcttccccgccctccttccctccctacctgcaaAAA
TGGCTGGAAACGTACGCAAGCACCGAATTTGAGGCAAGTGCTCTGGCAAC
AGAATCGCTATTGGATTCCGAAgttgaaaaggagaaggtaaagaggagga
ataatcgaagaaagaagcaccatgaagggcaagggaagggagggaaggag
gacgagaaggaggaagaggaggaggaggaggaggaggaggaggaggagga
ggaggaggaggaggaacggcgTTTATTCGCCCTGTACGGAGAAGCCATGG
AGCTGGAATACGCCTTTTTTGCGGAGCAATGGCAGGAATCGCAGGAGTGG
CGCGGCCTCGAtccttccgtcctcatcacGGACTTCGACGGCACCTGCAC
CCTGGCAGACACCACGCACCTTCTGGCGCGCGCCGCGGGGCACTTCCAGA
GCCCTGCTTCCACGGCAGAGCAGTGGAGGCGGTTGGAAGAGGGCTACCTC
TCTCAGCTCTCCGGCGTCCTTGACCCCCTCCTGacgggtcttcctccctc
cgtccctccctccctgcctccctcccagcccgaGGCGAAGGACCTGGGTG
GGGCCGCTGCCTTCTTGGCCCCCCTGGATGCCTTCGATATCAAGGCAGTG
GCGGCGGTCAGTGACTCCCGGATTCTCAAGGGGATCgacctctctctcct
tcccgccctcctcacctcgtcctccccaatgccttctttttcgccccccc
cctcctcccttccttcctcctttgctgctgccctcgccctccgtccttaC
TGCGCCACCACCCTTCGCTACGCCGCCGACCGCTCctcgtcgccttcttc
ctcctctctcttccacgtcctctccGTCTCGTGGTCGTCATTCCTCATCA
CTGCCGCCACCGGGCTCAGCCCCGCCAAGGTCACTTGCAACCAcctcgtg
gaggaggtaggatCAGACGGCCGCCTTCTTACCACCGGGGCAATCGAGGT
GAAGGTAGGAGGTCCGGGGGGGAAACTCGGCCATTTCCAGCGTTTGCTGC
AAGGCGCGGAGGCTGGacccgagggaggagggcagaaagggcGTGGACGG
TCGTCCCCGTCGGTGTTTATCGGAGATTCGGTTACGGATGTGTTGGCGTT
GATGGCAGCAGATGTAGGGATTGTGGTGGGTGAATCTGGGACTTTGAGAC
GGATGCTGCGAAGATTTGGATGGAAGATTCGGGGGCTAGTCGCATTTCCt
gtcaagaaagaggaaaggggcaaaGCCAGCCGGGTCGTCTACGCGGCCGA
GGATTGGGCGGAAATTGCAGCTTTTTTGTATGGGACGGATTTAGTGAaga
agatggtggaggagggaagaaggaataAGGGCAATACTTATTGCGGAGAA
TGAGTGGAGTCATCTCACGGTAGACACGGGATCAATGGGAGAAATGCCGC
ATGTGTTACTCGTGACTAATCGTACCAAAAAAAGTATTTTAAAAACAGCC
TGTGAATTATTTTTCTGGGTATGTTTTTTCTTATGCTGTCTGCAGTATGT
TTTAAAATATGTATGATTACATCTTTACATGCCTTTTTGTGCTGTGTCGC
ATTTTACCTTAAAAGCTTGTAGTAGCTTCCAAAATTAACCTCCCGCCCGG
CCGCGTTTTTTCAGTTACCCTCTTGTACGGTGCTGCCGCTTGTCCCCGTG
ATGAGCGTTGGAAAACGTGTTTAAAAGGCCTACAGTGTCTGGTTGTATAC
GGCGTGATGCTTGCAACGATGCGG back to topCoding sequence (CDS) from alignment at CM002471.1:513976..515849+ >rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002471.1:513976..515849+ (Nannochloropsis gaditana) ATGCGCCTTTACGCCCATGTTGCCCGTCgattgatggaggagagaggctc cctcggcgaggacgagaaggaacgATCGCAGGCTGAGGGCACCGCGGcga cttccttccctacctcttccccgccctccttccctccctacctgcaaAAA TGGCTGGAAACGTACGCAAGCACCGAATTTGAGGCAAGTGCTCTGGCAAC AGAATCGCTATTGGATTCCGAAgttgaaaaggagaaggtaaagaggagga ataatcgaagaaagaagcaccatgaagggcaagggaagggagggaaggag gacgagaaggaggaagaggaggaggaggaggaggaggaggaggaggagga ggaggaggaggaggaacggcgTTTATTCGCCCTGTACGGAGAAGCCATGG AGCTGGAATACGCCTTTTTTGCGGAGCAATGGCAGGAATCGCAGGAGTGG CGCGGCCTCGAtccttccgtcctcatcacGGACTTCGACGGCACCTGCAC CCTGGCAGACACCACGCACCTTCTGGCGCGCGCCGCGGGGCACTTCCAGA GCCCTGCTTCCACGGCAGAGCAGTGGAGGCGGTTGGAAGAGGGCTACCTC TCTCAGCTCTCCGGCGTCCTTGACCCCCTCCTGacgggtcttcctccctc cgtccctccctccctgcctccctcccagcccgaGGCGAAGGACCTGGGTG GGGCCGCTGCCTTCTTGGCCCCCCTGGATGCCTTCGATATCAAGGCAGTG GCGGCGGTCAGTGACTCCCGGATTCTCAAGGGGATCgacctctctctcct tcccgccctcctcacctcgtcctccccaatgccttctttttcgccccccc cctcctcccttccttcctcctttgctgctgccctcgccctccgtccttaC TGCGCCACCACCCTTCGCTACGCCGCCGACCGCTCctcgtcgccttcttc ctcctctctcttccacgtcctctccGTCTCGTGGTCGTCATTCCTCATCA CTGCCGCCACCGGGCTCAGCCCCGCCAAGGTCACTTGCAACCAcctcgtg gaggaggtaggatCAGACGGCCGCCTTCTTACCACCGGGGCAATCGAGGT GAAGGTAGGAGGTCCGGGGGGGAAACTCGGCCATTTCCAGCGTTTGCTGC AAGGCGCGGAGGCTGGacccgagggaggagggcagaaagggcGTGGACGG TCGTCCCCGTCGGTGTTTATCGGAGATTCGGTTACGGATGTGTTGGCGTT GATGGCAGCAGATGTAGGGATTGTGGTGGGTGAATCTGGGACTTTGAGAC GGATGCTGCGAAGATTTGGATGGAAGATTCGGGGGCTAGTCGCATTTCCt gtcaagaaagaggaaaggggcaaaGCCAGCCGGGTCGTCTACGCGGCCGA GGATTGGGCGGAAATTGCAGCTTTTTTGTATGGGACGGATTTAGTGAaga agatggtggaggagggaagaaggaataAGGGCAATACTTATTGCGGAGAA TGA back to top
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