rna7372, rna7372 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7372
Unique Name	rna7372
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1398
Alignment location	CM002471.1:434429..436730 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100053g25.5069.mrna
Orig protein id	gnl\|cribi\|Naga_100053g25.5069
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:434429..436730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g25	gene7132	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7372	rna7372-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23329.1	cds7355	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:434429..436730+
coding sequence from alignment at CM002471.1:434429..436730+

mRNA sequence

>rna7372 ID=rna7372|Name=rna7372|organism=Nannochloropsis gaditana|type=mRNA|length=1398bp
ATGCACGACTAATAGAGTAGACAGGATGGACTTGGAGGAGACGCCCACTA
TCTCCAATGAAAGGTGTACAGCTCGGCTGACGGGGTAGAATGACCTCTGT
AGCCTTTACGTCTCTTATATCGGAAGATCAGCATCACAATGAGACATAGA
GGCAAAGGCTTTTCTTGCTCAGGACAGTAGGCAGCGTGCAGAGGTGGCAA
TTAGTTCCAGGAAGGGATGTAGTGGAGTAGGAAAATTCAATTTATCAATT
GTACTCATGAATGCGAATATCTTAGCGTAGTGAACTGTGTCTTTAAGGGC
TGCGCAGGGTATTTAAATGAGTCCGGGCAGGTGTAGGAAAGTGGATCCAA
GAAATTCCGTGCTACCACCCCGCCTCATGATCATCATTACCCCGCCAAAC
ACAATCCCAGGCTTCAGCATGTCCTTTGGCCCCAAGACAGGCTACCGTGA
CGGCGGCACCAGGGGGGGGCAGGACCGTTTTAAGTGGGAAGATGTTAAGG
ACGAGCACTACCGAGAGCACTACCTTGGGCACAGCCTCAAGGCGCCAGTG
GGTCGGTGGCAGAAGGGCAAGGACCTGATGTGGTACACAAAGGCCGGCAA
GGTGAAAAGTGGGGAGGCAGAGGACCCGGAGGCGCAGAGGCAGCGGGAGG
TGGCGGAGATCAGGCAGCGGGACGAGGAGATGATCAACGCCGCGCTAGGA
ATGGCCCCAAAGTACCAGGCGGTGGTCGAGAGCCGGCTGGAGGCGAGCGA
GCTGAAGCAGCTCCTTGGAAAGGGCCTCTCCGAGCGTGACGACCTGCACG
GCGAGCGCGTGGAGGGAGTGGGCGCGGCGCCGGCCCCCCGGCACGAGCAC
TTGCCTAAGGGCTTGTCCATGGTCGAGAGGGAGATCGAGCGCATGAAGAG
CGCGCAAGCACAGGGCGTCGCTTTCAAGTATGAGGACGACGCCACACACC
TCTACGCCGAGCAGGAGGCCGAGGGTGGGGGCCACACCCACGCGGGGAAC
AAGAGGAAAGATTCGTCGAAACGAGAGTCTCTTAAAGATTATGGGGGCTC
AACAAGGGAAGAGAAAAAGCTGAAGAAAGAAGAAAAGCGGCGAAAGAAGG
AGGAAAAGAGGGAGCGCAAACAAGACAAGAAGCGTCAGAGAAAAGAAAAA
ATACTGGCTGTGGCCGAGGAGGCCATGCCAAGCAGGCACACATCTCGGCC
TGCAAGGAACGGCCGTAGCAGAAGTCCTGACCAGAAGCACCGACGACAAG
ACGGTGGTAGGTCGTGCTCTCCCGCCCACGGGTCAAGAGGACGCCGCGTG
CATTGATCACCCCTGATGGGAATCGGACGAGGTCGAGCACAAAGCCAGAA
GCACCGTAGGGAATGAAAGGAAAAGTAATTTTTGCATTCACGCTTGCA

protein sequence of rna7372

>rna7372-protein ID=rna7372-protein|Name=rna7372|organism=Nannochloropsis gaditana|type=polypeptide|length=547bp
MSITVAMKCGTSRILASQHGVSGLGRKHHLLKAPPPRLVLRWTASSSSPP
KAHVTNEKLMAKQIMTARAGCRETLYYAALQSDSSKDKVQIYHRVDPPPE
ILSPRLVLEDALRALLPRGYPRSVQKGYVEYVKLQMTASLASSAVGVLST
QSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIVFASVVNDRFDANPKR
WKMVATISLDLSCGLELLAPLAPAYFLAIASLANVGKNVCFLSASASRAA
IHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPI
CAGLSFIHISCNYLSLRHVCLNTLNAERAELVLDRFWSQGRIPHPGEVSG
EECFMWPAIYDTVAPSALKSGLPILRMGRPLHEVASPRQLVRLARLFARD
GYLLNARGRARDGTATVDVLMKEDASVEDVLRACIHAYYVRREASARGWK
APPPPSAWTQMTGRRTEEGLETWLLELVEETHRALQQPVVHSPGPSEEET
ITRVDDIVGQVKQAGWLIDSVFFPHTQNRVAFEGVATDEAWVSVQKV

mRNA from alignment at CM002471.1:434429..436730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7372 ID=rna7372|Name=rna7372|organism=Nannochloropsis gaditana|type=mRNA|length=2302bp|location=Sequence derived from alignment at CM002471.1:434429..436730+ (Nannochloropsis gaditana)
GGACTCATTTAAATACCCTGCGCAGCCCTTAAAGACACAGTTCACTACGC
TAAGATATTCGCATTCATGAGTACAATTGATAAATTGAATTTTCCTACTC
CACTACATCCCTTCCTGGAACTAATTGCCACCTCTGCACGCTGCCTACTG
TCCTGAGCAAGAAAAGCCTTTGCCTCTATGTCTCATTGTGATGCTGATCT
TCCGATATAAGAGACGTAAAGGCTACAGAGGTCATTCTACCCCGTCAGCC
GAGCTGTACACCTTTCATTGGAGATAGTGGGCGTCTCCTCCAAGTCCATC
CTGTCTACTCTATTAGTCGTGCATAGACCAcgtacctccctctccagccG
TGTACCTCCGCTTAGAGAGCCTCTCCCTGGGCGGGTGGTGCACGAGAAAC
AGAACAATGAGCATGTGAGTTCGGGCGTTGGTCTTCACAAACATATAATC
CTGCGTAGCGATGGGAAAgttccattccctcctgctTGCTTTCTCAGAGT
TAGATCACACCCTTCGTCAAGAGAGCCTCCCTACTCATCCTTTGCCCCAT
CGACACACGTACGGACAGCACAGTGGCCATGAAGTGTGGGACAAGTCGGA
TCTTAGCCTCCCAGCATGGCGTAAGTGGGCTAGGTCGAAAGCACCACCTC
CTTAaagcccctccacctcgactCGTGCTCCGATggaccgcttcctcctc
ctcaccccccaaGGCACATGTTACCAACGAGAAACTCATGGCTAAGCAGA
TCATGACAGCCCGGGCAGGTTGCAGAGAGACGCTTTACTATGCCGCGCTG
CAGTCGGACTCCAGTAAGGATAAAGTCCAGATCTACCACCGCGTCGACCC
TCCGCCCGAAATCCTGTCCCCTCGCCTGGTACTCGAAGATGCGTTGCGCG
CCTTGCTGCCGAGGGGCTACCCGCGCTCCGTGCAAAAGGGATACGTTGAG
TACGTGAAGCTGCAGATGACAGCCTCCCTGGCCAGCTCAGCCGTCGGGGT
CCTTTCAACCCAGTCACTACTCTACGCAATGggcctgggggcgggggcca
tcCCCTTGGCAGCGGCGCTCAACTGGATCATCAAGGACGGCATCGGACAG
GTAGGAGGCATCGTTTTTGCCAGCGTGGTCAACGACCGCTTCGACGCCAA
TCCTAAACGCTGGAAAATGGTGGCTACCATCTCGCTGGACCTGTCCTGTG
GCCTGGAGCTCCTGGCGCCCCTGGCCCCGGCCTACTTCTTAGCCATAGCT
TCCCTCGCCAACGTGGGCAAGAAcgtctgcttcctctccgcaagcgcctc
ccgcgccgccaTCCATAATTCCTTCGCGAAGCGGGAGAATCTGGCGGACA
tcacggccaaggcgggctCCCAATTTATCGTCACCTCCATCCTTGGCACC
GGGCTGGGCATCGCCCTCTCAACCGCCCTCGGATCCTCCTGGATGGCGCT
CGCTCCGATCTGCGCGGGGCTCTCTTTCATTCACATCTCCTGCAattacc
tctccctccgacaCGTCTGCCTGAATACACTTAACGCCGAGCGTGCAGAG
CTTGTCCTTGACCGCTTCTGGAGCCAGGGCCGGATCCCCCACCCCGGGGA
GGTGTCTGGAGAAGAATGCTTCATGTGGCCCGCCATCTATGACACCGTcg
ccccctctgccctcaaGTCGGGCCTGCCCATCCTGCGCATGGGCCGGCCG
CTGCACGAGGTGGCCAGCCCCCGGCAGCTGGTCCGACTCGCGCGCCTCTT
CGCCCGCGACGGCTACCTGCTGAATGCGCGGGGCCGGGCAAGGGACGGGA
CGGCTACAGTGGATGTGCtcatgaaggaggacgcgagcgtggaggacgtg
cttCGGGCTTGCATCCATGCCTACTACGTGCGACGGGAGGCCAGCGCCCG
AGGATGGAaagcgcctccgcccccgtccgCGTGGACTCAGATGACGGGCC
GGAGGACTGAGGAGGGATTGGAGACCTGGCTGctggagctggtggaggag
acgcacCGAGCCTTGCAGCAGCCTGTCGTCCATTCTCCGGGCCCTTCAGA
GGAGGAAACCATCACGCGTGTGGACGATATTGTGGGGCAGGTGAAGCAGG
CTGGGTGGCTGATCGACAgcgtcttcttcccgcacACGCAGAACCGTGTT
GCCTTCGAAGGGGTGGCGACGGATGAAGCTTGGGTTTCCGTGCAGAAAGT
ATAAGTGTGAATAGGCTGTGAATACTTAAAAAATCTCGGAATGAGGCAGG
CAAAGACCAAgtaaagaaagaaaaagcctGATAGCGGCATAGGGTGTCAT
AT

Coding sequence (CDS) from alignment at CM002471.1:434429..436730+

>rna7372 ID=rna7372|Name=rna7372|organism=Nannochloropsis gaditana|type=CDS|length=3288bp|location=Sequence derived from alignment at CM002471.1:434429..436730+ (Nannochloropsis gaditana)
ATGAGCATCACAGTGGCCATGAAGTGTGGGACAAGTCGGATCTTAGCCTC
CCAGCATGGCGTAAGTGGGCTAGGTCGAAAGCACCACCTCCTTAaagccc
ctccacctcgactCGTGCTCCGATggaccgcttcctcctcctcacccccc
aaGGCACATGTTACCAACGAGAAACTCATGGCTAAGCAGATCATGACAGC
CCGGGCAGGTTGCAGAGAGACGCTTTACTATGCCGCGCTGCAGTCGGACT
CCAGTAAGGATAAAGTCCAGATCTACCACCGCGTCGACCCTCCGCCCGAA
ATCCTGTCCCCTCGCCTGGTACTCGAAGATGCGTTGCGCGCCTTGCTGCC
GAGGGGCTACCCGCGCTCCGTGCAAAAGGGATACGTTGAGTACGTGAAGC
TGCAGATGACAGCCTCCCTGGCCAGCTCAGCCGTCGGGGTCCTTTCAACC
CAGTCACTACTCTACGCAATGggcctgggggcgggggccatcCCCTTGGC
AGCGGCGCTCAACTGGATCATCAAGGACGGCATCGGACAGGTAGGAGGCA
TCGTTTTTGCCAGCGTGGTCAACGACCGCTTCGACGCCAATCCTAAACGC
TGGAAAATGGTGGCTACCATCTCGCTGGACCTGTCCTGTGGCCTGGAGCT
CCTGGCGCCCCTGGCCCCGGCCTACTTCTTAGCCATAGCTTCCCTCGCCA
ACGTGGGCAAGAAcgtctgcttcctctccgcaagcgcctcccgcgccgcc
aTCCATAATTCCTTCGCGAAGCGGGAGAATCTGGCGGACAtcacggccaa
ggcgggctCCCAATTTATCGTCACCTCCATCCTTGGCACCGGGCTGGGCA
TCGCCCTCTCAACCGCCCTCGGATCCTCCTGGATGGCGCTCGCTCCGATC
TGCGCGGGGCTCTCTTTCATTCACATCTCCTGCAattacctctccctccg
acaCGTCTGCCTGAATACACTTAACGCCGAGCGTGCAGAGCTTGTCCTTG
ACCGCTTCTGGAGCCAGGGCCGGATCCCCCACCCCGGGGAGGTGTCTGGA
GAAGAATGCTTCATGTGGCCCGCCATCTATGACACCGTcgccccctctgc
cctcaaGTCGGGCCTGCCCATCCTGCGCATGGGCCGGCCGCTGCACGAGG
TGGCCAGCCCCCGGCAGCTGGTCCGACTCGCGCGCCTCTTCGCCCGCGAC
GGCTACCTGCTGAATGCGCGGGGCCGGGCAAGGGACGGGACGGCTACAGT
GGATGTGCtcatgaaggaggacgcgagcgtggaggacgtgcttCGGGCTT
GCATCCATGCCTACTACGTGCGACGGGAGGCCAGCGCCCGAGGATGGAaa
gcgcctccgcccccgtccgCGTGGACTCAGATGACGGGCCGGAGGACTGA
GGAGGGATTGGAGACCTGGCTGctggagctggtggaggagacgcacCGAG
CCTTGCAGCAGCCTGTCGTCCATTCTCCGGGCCCTTCAGAGGAGGAAACC
ATCACGCGTGTGGACGATATTGTGGGGCAGGTGAAGCAGGCTGGGTGGCT
GATCGACAgcgtcttcttcccgcacACGCAGAACCGTGTTGCCTTCGAAG
GGGTGGCGACGGATGAAGCTTGGGTTTCCGTGCAGAAAGTATAAATGAGC
ATCACAGTGGCCATGAAGTGTGGGACAAGTCGGATCTTAGCCTCCCAGCA
TGGCGTAAGTGGGCTAGGTCGAAAGCACCACCTCCTTAaagcccctccac
ctcgactCGTGCTCCGATggaccgcttcctcctcctcaccccccaaGGCA
CATGTTACCAACGAGAAACTCATGGCTAAGCAGATCATGACAGCCCGGGC
AGGTTGCAGAGAGACGCTTTACTATGCCGCGCTGCAGTCGGACTCCAGTA
AGGATAAAGTCCAGATCTACCACCGCGTCGACCCTCCGCCCGAAATCCTG
TCCCCTCGCCTGGTACTCGAAGATGCGTTGCGCGCCTTGCTGCCGAGGGG
CTACCCGCGCTCCGTGCAAAAGGGATACGTTGAGTACGTGAAGCTGCAGA
TGACAGCCTCCCTGGCCAGCTCAGCCGTCGGGGTCCTTTCAACCCAGTCA
CTACTCTACGCAATGggcctgggggcgggggccatcCCCTTGGCAGCGGC
GCTCAACTGGATCATCAAGGACGGCATCGGACAGGTAGGAGGCATCGTTT
TTGCCAGCGTGGTCAACGACCGCTTCGACGCCAATCCTAAACGCTGGAAA
ATGGTGGCTACCATCTCGCTGGACCTGTCCTGTGGCCTGGAGCTCCTGGC
GCCCCTGGCCCCGGCCTACTTCTTAGCCATAGCTTCCCTCGCCAACGTGG
GCAAGAAcgtctgcttcctctccgcaagcgcctcccgcgccgccaTCCAT
AATTCCTTCGCGAAGCGGGAGAATCTGGCGGACAtcacggccaaggcggg
ctCCCAATTTATCGTCACCTCCATCCTTGGCACCGGGCTGGGCATCGCCC
TCTCAACCGCCCTCGGATCCTCCTGGATGGCGCTCGCTCCGATCTGCGCG
GGGCTCTCTTTCATTCACATCTCCTGCAattacctctccctccgacaCGT
CTGCCTGAATACACTTAACGCCGAGCGTGCAGAGCTTGTCCTTGACCGCT
TCTGGAGCCAGGGCCGGATCCCCCACCCCGGGGAGGTGTCTGGAGAAGAA
TGCTTCATGTGGCCCGCCATCTATGACACCGTcgccccctctgccctcaa
GTCGGGCCTGCCCATCCTGCGCATGGGCCGGCCGCTGCACGAGGTGGCCA
GCCCCCGGCAGCTGGTCCGACTCGCGCGCCTCTTCGCCCGCGACGGCTAC
CTGCTGAATGCGCGGGGCCGGGCAAGGGACGGGACGGCTACAGTGGATGT
GCtcatgaaggaggacgcgagcgtggaggacgtgcttCGGGCTTGCATCC
ATGCCTACTACGTGCGACGGGAGGCCAGCGCCCGAGGATGGAaagcgcct
ccgcccccgtccgCGTGGACTCAGATGACGGGCCGGAGGACTGAGGAGGG
ATTGGAGACCTGGCTGctggagctggtggaggagacgcacCGAGCCTTGC
AGCAGCCTGTCGTCCATTCTCCGGGCCCTTCAGAGGAGGAAACCATCACG
CGTGTGGACGATATTGTGGGGCAGGTGAAGCAGGCTGGGTGGCTGATCGA
CAgcgtcttcttcccgcacACGCAGAACCGTGTTGCCTTCGAAGGGGTGG
CGACGGATGAAGCTTGGGTTTCCGTGCAGAAAGTATAA

Synonyms

Publications