rna7359, rna7359 (mRNA) Nannochloropsis gaditana

Overview
Namerna7359
Unique Namerna7359
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length537
Alignment locationCM002471.1:409382..410691 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1415
Orig transcript idgnl|cribi|Naga_100053g13.5056.mrna
Orig protein idgnl|cribi|Naga_100053g13.5056
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:409382..410691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g13gene7122Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7359rna7359-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23316.1cds7342Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7359 ID=rna7359|Name=rna7359|organism=Nannochloropsis gaditana|type=mRNA|length=537bp
ATGCATGAAGGTGAAGGCACTCTGGCTCGTTTCGATAGGCAACGAGTATT
GGCGGAATCGAGGTCGATCAGGAATGCGATCAGAAGAAAAGGTGCAAGAG
TATTCTTGGAGGAGAGGCTAGTCTGCCTCGAGGAAAGCTTTAAACGATGC
TCTTTGTGTTATGTGAGCATTCATAGAGCAGGACTCTACCTACCCTCACT
TTTGAGAGGTTTTGATATTTGGTTCGCGCTACCTTACAATCGCACATGCG
TACGGAAGGCCTCGGCGATGGATGAAATTCGGGTCCTGTTCAATGGACTT
CACAGGCAAATGCTGCAAGCGGAAAAAGAATACGGAATGGGAGAAACGAA
GGCTGAACAGCACATTAAAGCCGCTGATGCTGTTGTAATACTGGGAAAAT
ACGTCGTCGTGTGTGAACATTTTGCTGGAAGGGGCGTGCAAAAGCGCGGG
AATATGGCCTTGACGATTTGGCAGCTGTGGCAATTAGGCAGCGAAGCTTT
ACATCTCCGGAAGCGACAGTGTGTTTGTTTTGCGTGA
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protein sequence of rna7359

>rna7359-protein ID=rna7359-protein|Name=rna7359|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MMLRHLMLTATVAASNAGCSCFFMGWTRRAAPASSLTRFLTHSRRPSPQP
ACSATLSSSSAKRQEAKGKMFPDALSPIERMQLLRARAQLEDGDLPVSKA
EQHASSDPPSFVNPSEVHRHTILNWVQSMVIDFKLCPWASPALKANELKI
VVAPVSSSLHGLLENVVEEASLLASMSERPEDQNLTTLIGVPGPLLSDFQ
DFLDLVAVVDECLDELDLRGKVQVASFHPDFAFEDSTGDDVENFTNRSPL
PILHLLREVEVSRALGGYLGDPACIYERNKITMKEAGAEQLRAVLTACQR
MNFKA
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mRNA from alignment at CM002471.1:409382..410691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7359 ID=rna7359|Name=rna7359|organism=Nannochloropsis gaditana|type=mRNA|length=1310bp|location=Sequence derived from alignment at CM002471.1:409382..410691+ (Nannochloropsis gaditana)
TCATCCAGGTCGGTCGTGTCGATGATCAGGCAACCTCGACGAGAGAGACG
CCACCGGGCGCTTGCTGGTGcctacccggaggacgcGCGACGTGAAACTT
TACCCACACTTTGTCTCTCATCACATTTTGACGGATATGCAGGGGAATGA
TGTTGAGACATTTGATGCTCACGGCCACTGTGGCAGCCTCCAATGCTGGG
TGTTCTTGTTTCTTCATGGGTTGGACAAGGCGGGCAGCTCCCGCGTCCTC
GTTGACGCGCTTTTTGACGCACAGTCGCCGTCCCAGCCCTCAGCCAGCCT
GCTCAGCAACGCTATCGAGCTCCAGTGCAAAGAGACAGGAAGCGAAGGGC
AAAATGTTCCCCGATGCGCTATCTCCAATAGAGCGCATGCAATTGCTGCG
CGCCCGAGCGCAACTTGAAGACGGGGACCTACCAGTTAGTAAAGCGGAAC
AGCATGCAAGCTCGGATCCACCGTCTTTTGTGAATCCGTCCGAGGTGCAC
CGCCACACAATACTAAATTGGGTACAAAGTATGGTAATCGATTTCAAACT
TTGTCCCTGGGCATCGCCTGCATTGAAAGCCAATGAATTAAAAATTGTCG
TGGCTCCGGTGTCGTCCAGCCTGCACGGGCTCTTGGAGAACGTGGTTGAA
GAAGCCTCACTTCTGGCAAGCATGTCGGAAAGACCTGAGGACCAGAACCT
GACGACGTTAATTGGAGTACCGGGGCCGTTGCTTAGTGATTTTCAGGACT
TTTTGGATTTGGTGGCCGTGGTGGACGAGTGTCTTGATGAACTTGACCTC
CGAGGAAAGGTTCAAGTGGCCTCTTTCCATCCCGACTTCGCTTTTGAAGA
CTCAACAGGGGATGATGTAGAGAATTTTACAAATCGAAGTCCATTACCAA
TTTTGCATTTATTGCGTGAGGTTGAGGTCTCTAGAGCTCTAGGAGGTTAC
CTCGGAGATCCAGCTTGCATATACGAACGCAATAAAATAACGATGAAGGA
GGCTGGTGCCGAGCAACTTCGAGCTGTGTTGACAGCCTGCCAAAGGATGA
ATTTCAAAGCATAAATCGGTGTGGATAAAAGGCTAGTATACTACCCGAAA
TAAATGAGACGGTCGTATCTTCTAGATTCAAAATGTATTTGACTTTTACT
ATGATAAGTGTCTCGATAGAGGTGTAATTGTCTCTCATTTGCACACATAA
GTACTGAGGAAACTCTGCTTTTTATTAGGTGTCGTGATAgttccctcttg
ctcctccgtATGCTCGCTCTTTCACCTCATTTTCGCCCCCAGGCCTAAAT
CATGATTTCG
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Coding sequence (CDS) from alignment at CM002471.1:409382..410691+

>rna7359 ID=rna7359|Name=rna7359|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002471.1:409382..410691+ (Nannochloropsis gaditana)
ATGATGTTGAGACATTTGATGCTCACGGCCACTGTGGCAGCCTCCAATGC
TGGGTGTTCTTGTTTCTTCATGGGTTGGACAAGGCGGGCAGCTCCCGCGT
CCTCGTTGACGCGCTTTTTGACGCACAGTCGCCGTCCCAGCCCTCAGCCA
GCCTGCTCAGCAACGCTATCGAGCTCCAGTGCAAAGAGACAGGAAGCGAA
GGGCAAAATGTTCCCCGATGCGCTATCTCCAATAGAGCGCATGCAATTGC
TGCGCGCCCGAGCGCAACTTGAAGACGGGGACCTACCAGTTAGTAAAGCG
GAACAGCATGCAAGCTCGGATCCACCGTCTTTTGTGAATCCGTCCGAGGT
GCACCGCCACACAATACTAAATTGGGTACAAAGTATGGTAATCGATTTCA
AACTTTGTCCCTGGGCATCGCCTGCATTGAAAGCCAATGAATTAAAAATT
GTCGTGGCTCCGGTGTCGTCCAGCCTGCACGGGCTCTTGGAGAACGTGGT
TGAAGAAGCCTCACTTCTGGCAAGCATGTCGGAAAGACCTGAGGACCAGA
ACCTGACGACGTTAATTGGAGTACCGGGGCCGTTGCTTAGTGATTTTCAG
GACTTTTTGGATTTGGTGGCCGTGGTGGACGAGTGTCTTGATGAACTTGA
CCTCCGAGGAAAGGTTCAAGTGGCCTCTTTCCATCCCGACTTCGCTTTTG
AAGACTCAACAGGGGATGATGTAGAGAATTTTACAAATCGAAGTCCATTA
CCAATTTTGCATTTATTGCGTGAGGTTGAGGTCTCTAGAGCTCTAGGAGG
TTACCTCGGAGATCCAGCTTGCATATACGAACGCAATAAAATAACGATGA
AGGAGGCTGGTGCCGAGCAACTTCGAGCTGTGTTGACAGCCTGCCAAAGG
ATGAATTTCAAAGCATAA
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Synonyms
Publications