rna7340, rna7340 (mRNA) Nannochloropsis gaditana

Overview
Namerna7340
Unique Namerna7340
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1935
Alignment locationCM002471.1:367228..368774 -

Link to JBrowse

Properties
Property NameValue
Productl-iditol 2-dehydrogenase
Orig transcript idgnl|cribi|Naga_100057g10.3933.mrna
Orig protein idgnl|cribi|Naga_100057g10.3933
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:367228..368774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100057g10gene7104Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23374.1cds7323Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7340rna7340-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7340 ID=rna7340|Name=rna7340|organism=Nannochloropsis gaditana|type=mRNA|length=1935bp
CCCTTCTGTTGCAATCGATATATTAAGTCACGTGTTGCTAGATGCACAGG
CTGCAGGACTGCCAAGCAACAGCTCTATCACTCCGGGAAAAATGCATCCA
GGTGCATGTTGTGCTTGTACTTAATGGCCCGAGGATAAGTGGAAGTCTGT
CGGCACATTGACCTCCTGGGGTATCTTACACGTCACTTCACTGCCTAGCA
CCGTGCTTTCAAGCCTCCAATGCTCTCGCCGCTTGTCCTAATTCTTCATC
TTCCTACACACTACCTTAGAAGAGTGAGGGAAGGGCCTCCTTTTCACCCT
TCGACTTCTGCCTCGCAATCTCACCACACAGTCCAACCGGTCGTCGGCCA
GGTCAGAGCGCCATGGGGGAAGTGACAACGCCCTCGACACCGAGACCCTT
CCTTGGCACTCTTTCGGGTGATACGTTGCTCACTGTGCTGCAGTTTTTAG
AAGTCGCAGACGGGACACGCGTGTGTTTAGTTTGCCCTTACCTGAACAAA
TCTGTATGTGAACACGATGAAGTTCTATTCAAAGCACATGTTTTGAACGA
GCAATTAGTCTCGCTACCGACTCCGGTGACCTTGAAACAGAAAGTCCGAG
CCGCCCAAACCCTGCAGACGGCTCTGGCCCTGAAGGGAGGGTGGAGGGGC
TTGTCTTACGTCACGCGGCATGTCACAGGACGGCCATGCCTCGGCTATTT
CCGGCAGATACCTCGCGACTTCAGGAGCGATTTCAGGGGCAAGCTCTTCC
GCGTACGCTTGGAGGATACCGAGGTGTCTGACATGGCTTGGGCGCCTGAG
GGGCTTCCCCGGGGCAGGGAGGGGCGGGGACTGGTGCTGGAGGAGGTAAC
ATTCTCGTGCACGCATGAGGTGGTGAAGGCCTTACGACTGTATAGAGCTC
CTGGGCAAAGCGGGTCTTGCTTGGGAGGAGTTTGCGATGGTGAGCCGTTG
GTGAAGTGGACAGCCCGAGTAGAGCCGAAAGGCCGGGGCCGGAGCCGGGA
GGATAGGGCCGCGGATACGCAAGTGTGCTTCGAAGTTTTTCACTCGAGGG
TAGGGGCGTTGCACCCTCTGGCGCCCTGCCTCTCGTTGTCGGCCTCCGGG
GGACAGCTGCGCGAGTTCGAGGACCTGCAGGGTCTGTGGAGAGGCGTGTA
TGGGAGCCACGGCTGGGAGATTATCCAGGTCCGGCTCCGACGACTGTGGA
CGGATGGCAGCGCAGGCACGTCCCCAAGCATCGGGGGCCGCGTCATCCTG
GAGGGGCTCAAGCTGGTGGGGGACGCCAATGTGCCGGCGAACGAGTGGAC
CTTCCGAGCCGACGTGACGGCCCCCCCTCTGGACAGGGCGGAGGCGTTGG
GGGCGGACACTAGGCCCATATACTCACTAACTACGCGAATGGTTCCACAG
TCATGGGTCCTGGCCGAGGAGGCCGGGCGGATCCGAGCCGTTTACCGTGG
CAAGGGGCAGGTCAACATGGTGCCGGGCATCTGGGAGCCGCAGGAGGTGG
GGGTGGACGTGATGCTACTCAGGCGGGAGGAGAACGGGGGGCGGGGGGGA
ATCTGGCTGCTCTGGCACGATGAGGGCTTCTCGTCCAGGCATTGCATCGA
GCTGACGCGGTTGATAGAGGGGGAGGAGGCGGGGGAAGGCGAGGGGCGGG
CTTTTGTGGAGGGCTTGGAGGCGACGTCGGGGTCAGAGTCCGATTAGGGG
AGCGCCGGGGCGGGGCACCGGCCTGAGCCTCTGCAGAGACTCTTTGGAGG
GAGGGACGGGTCACGTGCTAAGGGCATGACCAAAGCACTGGATAGGAAGC
AACTCAGGCTGTTTTCAATCGTCGAATCGCGGTGAGCCCTCCCGGGCATG
CCTAAGTTTGTGTATTTGTGAAAAGTGCCTCGACGACTGAGAAATAAGAA
GCAGCGTGACGAATGAATGTGGATGCCGCCTGTCG
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protein sequence of rna7340

>rna7340-protein ID=rna7340-protein|Name=rna7340|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
MSSAQYVQVAPFGSNFSCKSSDLTSKVVREMASTDSDNMQSSLQSQNPAA
YLLSINKIAVKNYELPSPLGEYDVRIAIKAVGICASDVHYLRRGRIADFI
VKEPMVIGHESAGEVVAVGKKVTNLVVGDRVAIEPGIACQRCPQCKTGAY
NLCPDMRFFATPPVHGSLARFVQHPANLCFPLPASISYEEGAMCEPFAVG
VYACTKAKVRPGIRLLITGAGPIGLVTLLAARAFGASDIIITDVDRRRLA
IAAEIAPGTRTVLVEGKAPTEVLHMVGGCGCVDVTMDCAGFEGTVELALE
ATANGGKVLLIGMGCSTRRMHIPLLPAAIREVDLLGSFRYRNVYPACLAM
IASGKVDLKRLITHYKDLSGPGSFTAESVTSGFALSEQGGEVVKVMFTL
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mRNA from alignment at CM002471.1:367228..368774-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7340 ID=rna7340|Name=rna7340|organism=Nannochloropsis gaditana|type=mRNA|length=1547bp|location=Sequence derived from alignment at CM002471.1:367228..368774- (Nannochloropsis gaditana)
GCGACATAATTGAGAAGAGAGATGTCTAGTACCTGTGAATTCCATACATG
TAGAATGCCCATAGACATCAGTAAGTGTGAAAATTGACATGTCATCGGCA
CAATATGTGCAGGTTGCCCCATTTGGCTCTAACTTTTCTTGCAAGAGCTC
GGATTTAACGTCAAAAGTGGTGCGGGAGATGGCGTCAACAGACAGCGACA
ACATGCAAAGCAGTCTACAATCACAGAATCCGGCGGCATATTTACTCTCT
ATCAACAAAATTGCAGTCAAAAATTACGAATTACCATCCCCTCTGGGAGA
GTACGACGTACGTATTGCAATAAAGGCCGTCGGCATTTGTGCCTCAGACG
TTCACTACCTTCGAAGAGGTCGTATTGCCGACTTTATTGTAAAGGAGCCC
ATGGTAATAGGCCACGAGAGCGCAGGAGAGGTAGTGGCTGTGGGAAAGAA
AGTCACAAACCTTGTTGTAGGTGACCGGGTGGCAATTGAGCCAGGCATCG
CTTGCCAAAGGTGCCCGCAGTGCAAAACGGGCGCTTACAATTTATGCCCT
GACATGCGATTTTTCGCGACCCCCCCGGTGCACGGCTCCCTCGCCCGCTT
CGTTCAGCACCCGGCAAATCTATGCTTTCCTTTGCCTGCCTCCATATCCT
ACGAAGAGGGCGCCATGTGCGAGCCCTTTGCGGTTGGCGTGTACGCGTGC
ACCAAAGCCAAGGTACGCCCGGGCATCCGCCTGCTCATCACCGGAGCAGG
CCCAATCGGACTGGTGACCCTCTTGGCAGCCCGTGCTTTTGGAGCCTCCG
ACATCATTATCACCGACGTGGACCGGCGGAGACTCGCCATCGCCGCCGAG
ATAGCGCCGGGGACACGGACGGTCCTTGTAGAGGGCAAGGCGCCGACAGA
GGTGCTACACATGGTCGGAGGCTGCGGGTGCGTGGATGTGACGATGGACT
GCGCAGGGTTCGAGGGGACCGTGGAGCTGGCCTTGGAAGCGACGGCCAAT
GGCGGCAAGGTCCTCTTGATCGGCATGGGATGCAGCACCCGCAGAATGCA
CATCCCCTTGCTCCCGGCGGCTATCCGGGAAGTCGACCTGCTGGGGAGCT
TCCGTTACCGAAACGTGTACCCGGCGTGTCTGGCCATGATCGCGTCCGGT
AAGGTGGATTTGAAGAGGCTCATCACCCACTACAAAGATTTGTCGGGGCC
GGGCTCTTTCACAGCCGAATCGGTAACAAGCGGTTTTGCGCTTTCGGAGC
AGGGGGGGGAGGTGGTAAAAGTCATGTTCACGCTGTAGGACAGGATTTGA
TGGGGGCAGAAAAAAATGGTCGAGGCCCTATCTCACGGTATTCCTTAACG
TCTAGGTTTTACGCAAAACATCTTCAATTTATTTATTTGTGCTCTATGAG
TGATTTATGTCTCATCCACCCCAACAAAAGCAAAAATATTCCTGCACACA
CGCCCGCCCTGCTCCTCCTTGCTCAGACGCCTTCACTGCATCCCTTCACA
CTATCTGCAGCTTCCAAAGCCCTTACCGCAGCCACGGCACTCAATTG
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Coding sequence (CDS) from alignment at CM002471.1:367228..368774-

>rna7340 ID=rna7340|Name=rna7340|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at CM002471.1:367228..368774- (Nannochloropsis gaditana)
ATGTCATCGGCACAATATGTGCAGGTTGCCCCATTTGGCTCTAACTTTTC
TTGCAAGAGCTCGGATTTAACGTCAAAAGTGGTGCGGGAGATGGCGTCAA
CAGACAGCGACAACATGCAAAGCAGTCTACAATCACAGAATCCGGCGGCA
TATTTACTCTCTATCAACAAAATTGCAGTCAAAAATTACGAATTACCATC
CCCTCTGGGAGAGTACGACGTACGTATTGCAATAAAGGCCGTCGGCATTT
GTGCCTCAGACGTTCACTACCTTCGAAGAGGTCGTATTGCCGACTTTATT
GTAAAGGAGCCCATGGTAATAGGCCACGAGAGCGCAGGAGAGGTAGTGGC
TGTGGGAAAGAAAGTCACAAACCTTGTTGTAGGTGACCGGGTGGCAATTG
AGCCAGGCATCGCTTGCCAAAGGTGCCCGCAGTGCAAAACGGGCGCTTAC
AATTTATGCCCTGACATGCGATTTTTCGCGACCCCCCCGGTGCACGGCTC
CCTCGCCCGCTTCGTTCAGCACCCGGCAAATCTATGCTTTCCTTTGCCTG
CCTCCATATCCTACGAAGAGGGCGCCATGTGCGAGCCCTTTGCGGTTGGC
GTGTACGCGTGCACCAAAGCCAAGGTACGCCCGGGCATCCGCCTGCTCAT
CACCGGAGCAGGCCCAATCGGACTGGTGACCCTCTTGGCAGCCCGTGCTT
TTGGAGCCTCCGACATCATTATCACCGACGTGGACCGGCGGAGACTCGCC
ATCGCCGCCGAGATAGCGCCGGGGACACGGACGGTCCTTGTAGAGGGCAA
GGCGCCGACAGAGGTGCTACACATGGTCGGAGGCTGCGGGTGCGTGGATG
TGACGATGGACTGCGCAGGGTTCGAGGGGACCGTGGAGCTGGCCTTGGAA
GCGACGGCCAATGGCGGCAAGGTCCTCTTGATCGGCATGGGATGCAGCAC
CCGCAGAATGCACATCCCCTTGCTCCCGGCGGCTATCCGGGAAGTCGACC
TGCTGGGGAGCTTCCGTTACCGAAACGTGTACCCGGCGTGTCTGGCCATG
ATCGCGTCCGGTAAGGTGGATTTGAAGAGGCTCATCACCCACTACAAAGA
TTTGTCGGGGCCGGGCTCTTTCACAGCCGAATCGGTAACAAGCGGTTTTG
CGCTTTCGGAGCAGGGGGGGGAGGTGGTAAAAGTCATGTTCACGCTGTAG
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Synonyms
Publications