EWM23349.1, cds7319 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|585104357|gb|EWM23349.1| (hypothetical protein Naga_100057g14 [Nannochloropsis gaditana]) HSP 1 Score: 478.789 bits (1231), Expect = 5.780e-171 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 Query: 1 MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN 233 MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN Sbjct: 1 MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN 233
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|1210514369|dbj|GAX26699.1| (hypothetical protein FisN_2Hh354 [Fistulifera solaris]) HSP 1 Score: 84.7297 bits (208), Expect = 4.244e-17 Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0 Query: 108 AVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196 AVI+ C G+G+GC + EGNE ++ LQE+SA N E +++ L Y + N+ D+F V + LV KPDG F+A+ + ++L++EGKV Sbjct: 44 AVISSKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKV 132
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|224012104|ref|XP_002294705.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969725|gb|EED88065.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.0333 bits (201), Expect = 1.228e-15 Identity = 38/108 (35.19%), Postives = 66/108 (61.11%), Query Frame = 0 Query: 94 GLSSTTGIMAPVHAAVINMP-RCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNY 200 +S+ + + P +A VI P RC G GDGC ++ EGN F++ LQ++S +N E ++K+ L Y + N+ D FAV ++++V + DG F+ + K++ +GK+ Y Sbjct: 69 SISTASIAVTPANADVIRSPGRCANGEGDGCDSLAEGNAFIESLQKKSLENKEENQKEALYAYYMKNYPDVFAVSDKRMVKRQDGSFVLYSLEEVKEMTNQGKIAIEY 176
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|1210531324|dbj|GAX10085.1| (hypothetical protein FisN_2Lh354 [Fistulifera solaris]) HSP 1 Score: 80.4925 bits (197), Expect = 2.231e-15 Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 0 Query: 108 AVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196 AVI+ C G+G+GC + EGNE ++ LQE+SA N E +++ L Y + N+ D+F+V + LV K DG F+A+ + ++L+++GKV Sbjct: 44 AVISSKYCSAGVGEGCGDLSEGNELIRSLQEKSAMNRERYQQEALDAYYMKNYPDFFSVVGKTLVKKTDGTFVALADSEVEKLKQDGKV 132
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|298706954|emb|CBJ29773.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.0258 bits (188), Expect = 5.968e-14 Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 0 Query: 89 GSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKE 205 G+ + G + TG M A V PRC G G C + EGNE +K LQ +SA + + ++ L YN++NFKDYF +++ +V GK+ + N Y EK GKV + ++ ++ Sbjct: 59 GAVLVGGALITGAMDVARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKDYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFLGED 175
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|397569728|gb|EJK46927.1| (hypothetical protein THAOC_34382 [Thalassiosira oceanica]) HSP 1 Score: 67.3958 bits (163), Expect = 3.747e-10 Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 0 Query: 101 IMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196 MAP+ A + R G G C + GNE++K LQ RS +N E+++++ L Y + N+ D FAV +K+V K DG F D +L EG++ Sbjct: 42 FMAPLVANFRH--RTANGEGSDCERLAGGNEYIKSLQRRSIENKEANERESLNAYYMKNYPDVFAVDGKKMVKKTDGSFALYDTNDLARLTHEGRI 135 The following BLAST results are available for this feature:
BLAST of EWM23349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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