EWM23352.1, cds7312 (CDS) Nannochloropsis gaditana

Overview
NameEWM23352.1
Unique Namecds7312
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:341586..341897 +
Alignment locationCM002471.1:342057..342410 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23352.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g22.3911.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:341586..341897 +
CM002471.1supercontigCM002471.1:342057..342410 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23352.1 vs. NCBI_GenBank
Match: gi|585104360|gb|EWM23352.1| (hypothetical protein Naga_100057g22 [Nannochloropsis gaditana])

HSP 1 Score: 445.662 bits (1145), Expect = 2.525e-158
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MCRSGLWFIALAFLASIATSTAFLVPFPERPLPCTRCHATAISTSGQVNRCSVLRFWTQAAVLPALVLLSPDLRSEGRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYPDVKALVNSLIRNYKLKSSMESALALLPSGSTEEGRKFAKSAYENLTIILEYFPEDVAGPTANKTLKPDQLSFTIKALQATRKELDSLLGLFPTELRGRLAENVANT 221
            MCRSGLWFIALAFLASIATSTAFLVPFPERPLPCTRCHATAISTSGQVNRCSVLRFWTQAAVLPALVLLSPDLRSEGRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYPDVKALVNSLIRNYKLKSSMESALALLPSGSTEEGRKFAKSAYENLTIILEYFPEDVAGPTANKTLKPDQLSFTIKALQATRKELDSLLGLFPTELRGRLAENVANT
Sbjct:    1 MCRSGLWFIALAFLASIATSTAFLVPFPERPLPCTRCHATAISTSGQVNRCSVLRFWTQAAVLPALVLLSPDLRSEGRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYPDVKALVNSLIRNYKLKSSMESALALLPSGSTEEGRKFAKSAYENLTIILEYFPEDVAGPTANKTLKPDQLSFTIKALQATRKELDSLLGLFPTELRGRLAENVANT 221          
BLAST of EWM23352.1 vs. NCBI_GenBank
Match: gi|299472708|emb|CBN80276.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 5.196e-12
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 0
Query:   77 GRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYPDVKALVNSLIRNYKLKSSMESALALL-PSGSTEEGRKFAKSAYENLTIILEYFPEDVAGPT-ANKTLKPDQLSFTIKALQATRKELDSLLGLFPTE 209
            G +  +A  P+ + L  V  VR ST+QLE+ LT+    P +  LV  LI+NYKL  S++     +  SG         + A E L    EYFP +V   T A K L  + L FT+ AL ATR +LD  L   P++
Sbjct:   64 GSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTGATKKLSSEALEFTVNALIATRAKLDLFLSKVPSD 198          
BLAST of EWM23352.1 vs. NCBI_GenBank
Match: gi|922852784|gb|KOO21448.1| (hypothetical protein Ctob_007745 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 62.7734 bits (151), Expect = 1.403e-8
Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 0
Query:   70 SPDLRSEGRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYP-----DVKALVNSLIRNYKLKSSMESALALLPSGSTEEGRKFAKSAYENLTIILEYFPEDVAGPTANKTLKPDQLSFTIKALQATRKELDSLLGLFPTEL 210
            + D+ + GR +A      +E L  V  ++++T Q E  L S   Y      ++K  +N ++ NY L+     A A  P G  ++   +  +A E LT ILEYFP+ +    AN  L  +Q +F + AL++  K +DS LG  P E+
Sbjct:   31 NGDIGARGRVVAFRVGDQQE-LQIVGELKEATGQ-ETRLVSTGKYKELQRLNIKRAINMMVDNYDLRDRFVRASAYAPIGQQQQALSYGNTAVEGLTQILEYFPDKL---VAN-DLTREQSTFVLAALKSVSKSIDSFLGYMPQEV 170          
The following BLAST results are available for this feature:
BLAST of EWM23352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104360|gb|EWM23352.1|2.525e-158100.00hypothetical protein Naga_100057g22 [Nannochlorops... [more]
gi|299472708|emb|CBN80276.1|5.196e-1237.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|922852784|gb|KOO21448.1|1.403e-831.51hypothetical protein Ctob_007745 [Chrysochromulina... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7329rna7329Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications