rna7327, rna7327 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7327
Unique Name	rna7327
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	838
Alignment location	CM002471.1:339056..341435 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100057g23.3916.mrna
Orig protein id	gnl\|cribi\|Naga_100057g23.3916
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:339056..341435 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g23	gene7092	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7327	rna7327-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23357.1	cds7310	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:339056..341435-
coding sequence from alignment at CM002471.1:339056..341435-

mRNA sequence

>rna7327 ID=rna7327|Name=rna7327|organism=Nannochloropsis gaditana|type=mRNA|length=838bp
CTCAAAACGCAACGCCACCACACACCTGCAGGGTCAAAGAACGCTCACGC
ATAAGGAAGACCATGAGTGACAATGAGGCCGATGCACTCTACGACAATTT
GATGGACGAGGAGGAGGAGGATCTATTAGAGGAGGAGGCAGCGCAGGAGG
AGGAAGAGGAGCAAGAGGGGCTTCCTGACCGTGATGAGAAGGAGCCTATT
GCCATCTTACCGCACGACGCTGCAGATTCTACTAAAGCGAACAAGGTCAA
GATTACAACGCGCTTTTTGACCAAATACGAACGTGCTCGGATCTTGGGAA
CACGGGCATTGCAGATCAGTATGAACGCTCCCATCATGGTCAAGCCGGGT
ACCGAGACGGATCCATTGAAGATAGCCATGATGGAGTTGCGTGCCCGCAA
AATTCCGATCATCATCCGCCGGTATTTGCCAGATGGGAGTCATGAAGATT
GGCGCATTGAAGAGCTGGAAATTCCTGGCTTGGAAATGTGAGGAGGAAAT
TTGAAGAGGTGTGAAGGGGCAAAAGCAAAGCGAGAGGGACACGTGCAGAG
ATTGGATTGGAAGGCAAAGGGTCTGCAATTAAACAAGAATGAGGAGTGTC
AACGAGCGCACGACACTCGTGGGACGCGTGTATAAAGGACAAAATACATT
GAGGCATGACCGGTTGTATGACCAAAGAAGAATATATTTTTTAAATTGTG
ACCCTTGCAAAGAGTCACCGGGACAAAAGAAACCACAAGAGAAATACGGT
TTCGAATCGCAAGGCTCCTTTTTTAAACTGAACACAGAAGCTTGCAGAAC
GCGTCGATATAAAGGTAAACACTTGAGATAGGTTTACG

protein sequence of rna7327

>rna7327-protein ID=rna7327-protein|Name=rna7327|organism=Nannochloropsis gaditana|type=polypeptide|length=468bp
MWPGQAPPPPPPPPPPPPPPPLPPPPPPPPPPPPPPPPPSSSAFPPPPPP
PPPPPPPPPPPRSAPPLPPPPQPPGTSGANTSAAPQDGSSFSSFHSDGKP
ASANGSTHAGPTKHAPGKRPRPGQPPPSHLAAATTAAHKSQAGTRGRGGA
SGGSTSAPVQLSRWRDAIRSDFVVDLKFQLPLPEVPLGPRFLTVDSLANL
GDLVRYREVVPLASRFKYPLHSDISLGVEIDTIDRKKWQAPVSNGASLPP
SLHPDDAAFLEWELFQGRQKREAEDGEGGREGGEDTEGVATAADVAAPWM
LRPRYETAVTYDSQQGREGGGAQGRKGRAEGEEGEEDGREVLDETRQEGW
EAAIARSFEEAQRGEGLGPREAGERKPAWVAELVPDAGQWASELMVVQFG
NEVRGREEEAAQEAPLFAVEGGREGEGWGLGRTVKAGYYRGQGHASVGEA
REGGGSFASVSSLSATTI

mRNA from alignment at CM002471.1:339056..341435-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7327 ID=rna7327|Name=rna7327|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp|location=Sequence derived from alignment at CM002471.1:339056..341435- (Nannochloropsis gaditana)
GCGCCCGCGACGTCCTCTCGCTTGGGTGAAACAGGGAAGAAAATCGGAAT
CACGGCTCACACGGGTAAAATTCTCACATCTTACAGTGCAGGGAACAAAG
GGACCACTGCATATTTGTGGCATAGCTCCAGGTTGAAATAGATGTGGCCA
GGACAGGTAAGGAGGAGAGTGCGCGTTTGTAGGTGTGTGGACAGGCAGAT
ATTTTATCACAGCGCCTCCGCAATACGTTCTCGTTATCTGAGACGCGTTC
ACATGGATTGAATCATCAATGCCAACAGAAGATTACTTTTTGGAGCGATC
GCTTCTTTGAATTCACTGTGGTAATTTAGGAAGATAACTGATGGTTTGTC
AGAAAGAGCTGGGTGTTGTCTATCGCATGTCAGCACTTTCAGGACGAGCC
ACCTCCGCTCTCACGGTGTACTGAATTCCCCCTTACAACCAGCAGGCACC
ACCACCCCCGCCTCCTCCTCCTCCTCCTCCTCCACCTCCCCCCCTCCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCCCCTTCG
TCCTCCGCTTTCCCCCCCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCC
GCCTCCTCCTCCCCGATCTGCGCCGCCACTGCCACCGCCGCCGCAGCCGC
CTGGAACGTCAGGTGCAAATACGTCGGCAGCACCCCAGGACGGCTCTTCC
TTCTCGTCCTTCCATTCAGACGGCAAACCGGCTTCAGCCAACGGGAGCAC
CCACGCCGGCCCGACCAAACACGCTCCTGGAAAACGACCGCGGCCGGGCC
AGCCTCCTCCTTCGCACCTGGCGGCCGCCACCACCGCCGCCCACAAGAGT
CAGGCCGGCACGCGCGGACGTGGCGGGGCCTCGGGTGGAAGCACCAGCGC
CCCTGTCCAGCTCTCTCGGTGGCGGGACGCGATTCGCAGCGATTTCGTGG
TGGACTTGAAGTTCCAGCTTCCCCTCCCGGAGGTGCCTCTGGGGCCCCGC
TTCCTGACCGTGGACAGTTTGGCGAACTTGGGGGACCTCGTGAGGTACCG
GGAGGTGGTGCCATTGGCTAGCAGATTCAAATATCCGTTACACTCAGACA
TCTCCCTGGGCGTGGAAATCGACACGATCGACCGGAAGAAGTGGCAGGCC
CCAGTCTCGAACGGGGCCTCCCTCCCTCCCTCCCTCCACCCGGACGATGC
CGCCTTCCTCGAGTGGGAGCTGTTTCAGGGGAGGCAGAAGAGGGAGGCGG
AGGACGGGGAGGGAGGGCGGGAGGGGGGGGAGGACACGGAGGGCGTGGCC
ACCGCGGCCGACGTGGCGGCTCCATGGATGCTGCGGCCCAGGTACGAGAC
GGCGGTCACGTACGACAGTCAGCAAGGGAGGGAGGGAGGGGGCGCACAGG
GGAGGAAGGGGAGGGCGGAGGGGGAAGAGGGGGAAGAAGACGGGAGGGAG
GTGCTGGACGAGACGCGGCAAGAAGGATGGGAGGCAGCCATTGCGCGGAG
CTTCGAGGAGGCGCAGAGGGGGGAGGGTTTGGGGCCACGGGAGGCCGGGG
AGCGGAAGCCTGCCTGGGTGGCGGAGTTGGTGCCGGACGCGGGCCAGTGG
GCGAGCGAGTTGATGGTGGTGCAGTTCGGGAACGAGGTGCGGGGGCGGGA
GGAGGAAGCGGCGCAAGAAGCGCCTTTGTTCGCTGTGGAGGGGGGAAGGG
AGGGGGAGGGTTGGGGCTTGGGGAGGACGGTGAAAGCGGGGTACTACAGG
GGCCAGGGGCACGCCTCCGTGGGGGAAGCGAGGGAGGGGGGGGGTTCATT
TGCAAGCGTTTCGAGCCTGTCCGCTACTACCATCTAGAGGTGGGGAGGGC
GGATGGGAGGGGGGGGGTCGGGGGGCCCGAGGGGGCGCAGGGGCGGGGAA
CGCTACCGCAGCAGCAAGTGTTGCTGCTTGTAGACCCGGAGGCGGGGGGG
GCGAGCCTGTGCCCGATCTCGGCGGTCTTGAAGGTGAAGAAGATGGACCG
GGCGGTCTCGGAAAAGCCGGCGCGGGGCGTGAGTCTGGTGCACCGGCCCT
TGAGCGAGGAGGAGGAGGAGGCGAGGAGGGGGAAGCTCCGGAGGGTGGGG
TGGGAGGGGGAGGAGGGTGCGGGCAGGGGTTAGAAGGAGAAGAGCCTGCA
GGGGCTCGGAAATGCGCGGCCAGGGGCCAGCTGAGGGGAGGAAAGGAGAG
GGAGCGAAGGTCGGGAGTTGGGACGGGGAAGGAAAGAAAGAAGAGAGGGG
CCAAGAGGCACGGAGCACGTGGTGGTGACTGGGACTGCTTTCTTTTCCCT
GCTTCGGAGAGTACGAATGGGTATTTATTCCGTTTATACAAATATATGAA
ATATATATAGCATTTCACAAGCTCCGGAGA

Coding sequence (CDS) from alignment at CM002471.1:339056..341435-

>rna7327 ID=rna7327|Name=rna7327|organism=Nannochloropsis gaditana|type=CDS|length=2814bp|location=Sequence derived from alignment at CM002471.1:339056..341435- (Nannochloropsis gaditana)
GCACCACCACCCCCGCCTCCTCCTCCTCCTCCTCCTCCACCTCCCCCCCT
CCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCCC
CTTCGTCCTCCGCTTTCCCCCCCCCTCCTCCTCCTCCCCCTCCTCCCCCT
CCTCCGCCTCCTCCTCCCCGATCTGCGCCGCCACTGCCACCGCCGCCGCA
GCCGCCTGGAACGTCAGGTGCAAATACGTCGGCAGCACCCCAGGACGGCT
CTTCCTTCTCGTCCTTCCATTCAGACGGCAAACCGGCTTCAGCCAACGGG
AGCACCCACGCCGGCCCGACCAAACACGCTCCTGGAAAACGACCGCGGCC
GGGCCAGCCTCCTCCTTCGCACCTGGCGGCCGCCACCACCGCCGCCCACA
AGAGTCAGGCCGGCACGCGCGGACGTGGCGGGGCCTCGGGTGGAAGCACC
AGCGCCCCTGTCCAGCTCTCTCGGTGGCGGGACGCGATTCGCAGCGATTT
CGTGGTGGACTTGAAGTTCCAGCTTCCCCTCCCGGAGGTGCCTCTGGGGC
CCCGCTTCCTGACCGTGGACAGTTTGGCGAACTTGGGGGACCTCGTGAGG
TACCGGGAGGTGGTGCCATTGGCTAGCAGATTCAAATATCCGTTACACTC
AGACATCTCCCTGGGCGTGGAAATCGACACGATCGACCGGAAGAAGTGGC
AGGCCCCAGTCTCGAACGGGGCCTCCCTCCCTCCCTCCCTCCACCCGGAC
GATGCCGCCTTCCTCGAGTGGGAGCTGTTTCAGGGGAGGCAGAAGAGGGA
GGCGGAGGACGGGGAGGGAGGGCGGGAGGGGGGGGAGGACACGGAGGGCG
TGGCCACCGCGGCCGACGTGGCGGCTCCATGGATGCTGCGGCCCAGGTAC
GAGACGGCGGTCACGTACGACAGTCAGCAAGGGAGGGAGGGAGGGGGCGC
ACAGGGGAGGAAGGGGAGGGCGGAGGGGGAAGAGGGGGAAGAAGACGGGA
GGGAGGTGCTGGACGAGACGCGGCAAGAAGGATGGGAGGCAGCCATTGCG
CGGAGCTTCGAGGAGGCGCAGAGGGGGGAGGGTTTGGGGCCACGGGAGGC
CGGGGAGCGGAAGCCTGCCTGGGTGGCGGAGTTGGTGCCGGACGCGGGCC
AGTGGGCGAGCGAGTTGATGGTGGTGCAGTTCGGGAACGAGGTGCGGGGG
CGGGAGGAGGAAGCGGCGCAAGAAGCGCCTTTGTTCGCTGTGGAGGGGGG
AAGGGAGGGGGAGGGTTGGGGCTTGGGGAGGACGGTGAAAGCGGGGTACT
ACAGGGGCCAGGGGCACGCCTCCGTGGGGGAAGCGAGGGAGGGGGGGGGT
TCATTTGCAAGCGTTTCGAGCCTGTCCGCTACTACCATCTAGATGTGGCC
AGGACAGGCACCACCACCCCCGCCTCCTCCTCCTCCTCCTCCTCCACCTC
CCCCCCTCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCCCCT
CCTCCCCCTTCGTCCTCCGCTTTCCCCCCCCCTCCTCCTCCTCCCCCTCC
TCCCCCTCCTCCGCCTCCTCCTCCCCGATCTGCGCCGCCACTGCCACCGC
CGCCGCAGCCGCCTGGAACGTCAGGTGCAAATACGTCGGCAGCACCCCAG
GACGGCTCTTCCTTCTCGTCCTTCCATTCAGACGGCAAACCGGCTTCAGC
CAACGGGAGCACCCACGCCGGCCCGACCAAACACGCTCCTGGAAAACGAC
CGCGGCCGGGCCAGCCTCCTCCTTCGCACCTGGCGGCCGCCACCACCGCC
GCCCACAAGAGTCAGGCCGGCACGCGCGGACGTGGCGGGGCCTCGGGTGG
AAGCACCAGCGCCCCTGTCCAGCTCTCTCGGTGGCGGGACGCGATTCGCA
GCGATTTCGTGGTGGACTTGAAGTTCCAGCTTCCCCTCCCGGAGGTGCCT
CTGGGGCCCCGCTTCCTGACCGTGGACAGTTTGGCGAACTTGGGGGACCT
CGTGAGGTACCGGGAGGTGGTGCCATTGGCTAGCAGATTCAAATATCCGT
TACACTCAGACATCTCCCTGGGCGTGGAAATCGACACGATCGACCGGAAG
AAGTGGCAGGCCCCAGTCTCGAACGGGGCCTCCCTCCCTCCCTCCCTCCA
CCCGGACGATGCCGCCTTCCTCGAGTGGGAGCTGTTTCAGGGGAGGCAGA
AGAGGGAGGCGGAGGACGGGGAGGGAGGGCGGGAGGGGGGGGAGGACACG
GAGGGCGTGGCCACCGCGGCCGACGTGGCGGCTCCATGGATGCTGCGGCC
CAGGTACGAGACGGCGGTCACGTACGACAGTCAGCAAGGGAGGGAGGGAG
GGGGCGCACAGGGGAGGAAGGGGAGGGCGGAGGGGGAAGAGGGGGAAGAA
GACGGGAGGGAGGTGCTGGACGAGACGCGGCAAGAAGGATGGGAGGCAGC
CATTGCGCGGAGCTTCGAGGAGGCGCAGAGGGGGGAGGGTTTGGGGCCAC
GGGAGGCCGGGGAGCGGAAGCCTGCCTGGGTGGCGGAGTTGGTGCCGGAC
GCGGGCCAGTGGGCGAGCGAGTTGATGGTGGTGCAGTTCGGGAACGAGGT
GCGGGGGCGGGAGGAGGAAGCGGCGCAAGAAGCGCCTTTGTTCGCTGTGG
AGGGGGGAAGGGAGGGGGAGGGTTGGGGCTTGGGGAGGACGGTGAAAGCG
GGGTACTACAGGGGCCAGGGGCACGCCTCCGTGGGGGAAGCGAGGGAGGG
GGGGGGTTCATTTGCAAGCGTTTCGAGCCTGTCCGCTACTACCATCTAGA
TGTGGCCAGGACAG

Synonyms

Publications