rna7284, rna7284 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7284
Unique Name	rna7284
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2921
Alignment location	CM002471.1:233772..236691 +

Link to JBrowse

Properties


Property Name	Value
Product	cleavage stimulation factor subunit 3
Orig transcript id	gnl\|cribi\|Naga_100077g14.5205.mrna
Orig protein id	gnl\|cribi\|Naga_100077g14.5205
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:233772..236691 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100077g14	gene7049	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7284	rna7284-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23415.1	cds7267	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:233772..236691+
coding sequence from alignment at CM002471.1:233772..236691+

mRNA sequence

>rna7284 ID=rna7284|Name=rna7284|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp
AGGGAGATCGAGCTCACTTCCGGGAAATCACCTGTAGGATCAAATACAAT
GCTCGAGAGGCCTAGGCATGGGGAGATGGAAGAAATGGACCACAGCAGCA
CCAACCCTCCGACGCGCGCCGGGGACGAGGAAGAGGAAGATAAGATGGGC
AAGGCAGGCGAACAAGGGGCGTGGGAGCGCATGAACAACGCGAAGGTGAC
CGCCACGTTGGCAGCAGCAGCGGCTGGCGTTATCCAGGAGGCAGCAATGG
CCATCGCAGAGGCAGGCGTGTATGAGAATGAGAAGGAAAAAAAACATGTC
CTGTCACCGCGCCACGCACAAGACTCTTTGAAGGCAAGCACGCCCCCCCC
CGGGGACGGCGAGAGTCCAGAAGGCTCTGTGAGCTCACCCTGTCCCAGCC
GAAGCCCCAGGCATCCTGGAAACAGGAGCCACGCCACGGGCACAGGCAAA
GGCGACCCTCGGGGGAGTGGGGAGGGGAAGATGAAGACGCCCCGGGCCCA
GAAATCCGTCGCCCAGACGATGGAGGAGGACGTGGACTCGTCCTTCTTCC
TCCAGGACGCCACAGACCGACAGCTCATGACCCTGGTCATGCTGGTCCCG
GATACCCCCCCCGTGCTGGCGGACTTGATCGGCAAGGGGGGCAGCACGGT
GGGGGAGATTCAACGCCTGACAGGGACCCAGGTCTCGATCGAACGGCTCG
TGCACCGAGGCCGAGAGAGGAAGGTGGCTCTCATGGGGAGCATTCTGGCG
GTGGCGACGGCCCAGCAGATCATCACCGCCCGCATTCGCCACCTGGAGGA
ACATTGCGGCGTGGGCCGAGAGTACGTGCCCCCCCCGAGCACACCCAAGG
GCTACGGGGAGGGCGCGGGGACCCTGTCCTCCTCCCCTTCCTCCTCCACC
TCCTCCTCTGCGTCCTCCAGCGCCTCCTCTTCCTCTTCCTCCTCGCCTTC
CTTCGAGTCCCTGGGGATGCCGGCCTCCCAGTCCCTTCCCCCCTTCCCTC
CGGGTCACCACCACCACCACCCTGTCTGGAAGGACGCCCAAGGTTGTCTG
AAATTGAAGTTGTGCGTACCGAATTGCACGGTCAGGCACTTGATTGGCAG
GGCAGGCACGGTGGTCTCGGCGATCGAACGCGACAGCGGTTGCATTTTGA
AATTTCAAAGCGAAGGAGAGATGGAAAACGGCGCCTTGGGTCGTATACTG
GAGATGTTGGGGGGGGGGTGTTACGCCCATGCCCGAGCGTGCTACCACGT
GTGCAGGAAGCTTGCAGACGATCGGACCCTGCCCACGATTTGGAAGGGAG
GGGACGTTTTCAGCGCCCGACAGAAGTTGGTCAAGGTAGGCGAGCACGGC
GGCATGGGGGGGAGAGAGCGGGTCATGGGGGGGGACGGGACGCGCCTGGG
GCTTGCTGCCCTGTCGCCCTCTCGCTCGCCGGCTCCCTTCTTTGTCCCCC
CTCGTTCCCACCTCTCGGGACAAGCACCGGTGTTTGTCGCGAAAGCCTCC
CTGGGCGAGAAGGGAGGGGAGGAGAGGAGCAGCCTGAAGCCCGTTCCTGG
CGATCGAGAGCGTGCCTTTCCCTCTGGCAAACACCTGGGATCGATGGTTA
CCCGCAACAGCAGCCATAGCGTCTCTGTGCCTTCATTCCCCCCTGTAACG
GCGGCGGGCGGAGACATGGGGGAAGGTCAAACCCCCTTGTCGTTTGACTC
GTTTAGCGACCAACCGTTCGGCACGCGGCAGTACCGGCAGTTCAACTCTC
CCGACGATCTTTTGTCGGCCTCCTCGCTCCTTCTTCCCTCCCAAGCGGAT
CCAGGGGGATGGTTCACGGGGAGAAGCACGTTTTTTTGGGGGGGGGGCGA
CACGAGGGTGGAGAAAGGAGGGAACGGCGGAGAGGAAGAGAAAGGGGACG
GATGGGGGGCGGGGGACGTGATGATGATGATGGCTAGGGTAAAGGAGCAG
GAGCGGGAGATGCGAGAGAACAGCTTCGCCTGGGATGCCAAAGGAAGCGA
GAGCGTGGAGGAGGAGTGGTCAGGATCCGAGGTGACGGAGAATGGGAGGG
GGGCGTACCAAGTCGTGCACGTGCTCGTCCCCAACAAGGCCGTGAGCTTT
TTGATCGGAAAGGCGGGCATTAATGTCATCGCGATTGAGAAGAAAAGCGG
GGCAAAAGTGGAATTTACTCGGGAGGCAAGCCCCCCGGCGGCAGAGCGAC
TAGTAAACATAAAGGGTAATGCCAAAGCGGTGAAAATTGCGGAGGCTCTT
CTAGAGGCGAAGACTTTGGAATGGCAGACGAGTCCGACTCTGATTCGGTA
GGCCAGAGGAGAGTTTTAGGGGGCCAAGTATGTCGCGCAACGAAGGAAGG
CAGGAGACAATGCATGGAGTTGACAGATTTGTGGCTACGGGGTTGGAATC
AGCGATGACTTTGGGGACAGGGTTTCAATATGGAAACAGCTACGTACGAG
TGCAATTGAAACACAATGGCACCTTTTTTGAGTCTGAAATGGATGGAAAT
GAAAGCCGAAGTTCTAGAATGACATGGCAGATTCTCATTGTTGACGATTA
GGGATATGAAGGTGGACATGTCTCCAAATGATGACTTTTTAAATAATACA
TTTATGAATAAGTAGACTGCATGATGCACAGGCTAGACAGATGTGCGATC
GGGAAAGGGCATCTAGAAAAAGATAGGAAGCGTTATGACAGGAAAACAGC
CTAATTATGCTCAGGTGTCGAACAGAGAAGGATATGAACACTTGATGTAG
GGGACATTGTTTGTCCCACGCATGACTTGAAAAATTGGTGTGATGTTGCC
GTATAGTGCCTTTTAATGAACCACCGCAGCAATGAAGGAGAAGCAAATGA
TCGATGATAGCCATGGAGCCTCGCAAACTTTTTCGTCGGTAGTAATAAAG
AAATTGCTTTATGGAACGTCA

protein sequence of rna7284

>rna7284-protein ID=rna7284-protein|Name=rna7284|organism=Nannochloropsis gaditana|type=polypeptide|length=868bp
MAAAIEVNAPFLGVDSDSEEEDEEIVPTTAVSRARSSAPPLPKAIITSRG
ADIPTPTSVKRRQSLGGLALSTAFTEAQLLSASDRFRDAWSKVQAHEWDV
RSWAALLSEAQTQRSGRAIALRDVYRLATRQFPTKVSLWKDWLEHELRQG
NLAQVDDIFRECLLEVPSVDLYLLYVARVRKTNPASLGDGASPEAVAEQR
ARVTAAFELGVRQVGVLVDAAPLWWDYIRYVEAWKDENGRDGGGEGGFGG
GYGGIAVAEAGSKIATLRRIYHRAVLVPVDGLDELWRAYEAWEKGLNEHT
ARQTLPQLLPGHQQAKTVARERRTIRDLQRLSSWATPPSHTAEEKEQLHY
LRRKIDFEKSNPENVDPVALKDRVRLSYRQAFAYFYHFPEVWYEFAAYEQ
ESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFL
IQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHA
QLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNV
RSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPIWFKLLE
FETCVASDRDPARVERVQQRIAEAFPRQAESHPLLRLWRRLNMFGTPPVE
DSSDDLLRQRWEEPAVSYRLLDDGERDGWGTGGGRRGRKPGKRGASSAAG
GEVTVGAGDDAGGGREGGREGGGDGVGGGDGGVDGEGRPAVSREARRRDD
PYGARALQQRRLQSIPEYLRKLYQMLPIHTGPPIDPDTIIRGLRDNPLPP
RPPGQSSGGSKMLGNGEGGERGKGRGRKRGRWGGGGDSDSGDSDDDMMRS
GAGDVFRQRQQQKLMAGT

mRNA from alignment at CM002471.1:233772..236691+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7284 ID=rna7284|Name=rna7284|organism=Nannochloropsis gaditana|type=mRNA|length=2920bp|location=Sequence derived from alignment at CM002471.1:233772..236691+ (Nannochloropsis gaditana)
TTTTTATCATGCTCTCTGCCTTTGCATTGTTGTGACACTTACAGGATGAG
CATCGAGGCGCGGACACAAAATCCTGATCTTTTCTCACAACATAAACCTT
TCCGTAGGGTAAGACGAAGGCACAGGTAGTGTTACCCGTGGCCGCGTGCG
ACCGGGCAAGGTACACCTCCTATGGCCGCTGCCATCGAAGTGAATGCGCC
GTTCCTGGGAGTGGACTCTgattcggaggaggaggacgaagaaatcGTGC
CCACCACGGCAGTGAGCCGTGCAAGAAGCAgcgctcctcctttgccAAAA
GCCATCATCACATCTAGGGGCGCCGACATTCCCACCCCTACTTCAGTGAA
AAGGCGGCAGAGCTTGGGAGGCCTGGCTTTGTCTACTGCTTTCACCGAGG
CACAGCTTCTGTCAGCGTCGGACCGCTTTCGGGATGCATGGTCGAAGGTC
CAGGCGCATGAATGGGACGTGCGGTCATGGGCTGCTCTCCTGAGCGAAGC
GCAGACCCAGCGCTCGGGGCGTGCAATTGCTCTTCGGGATGTTTATCGTC
TGGCTACGCGCCAGTTCCCTACGAAGGTGAGCCTCTGGAAGGACTGGCTG
GAGCACGAGTTGCGGCAGGGGAATCTGGCCCAGGTGGACGACATCTTTCG
GGAATGCCTCTTGGAGGTCCCTTCCGTGGACCTGTACCTCCTCTACGTGG
CGCGCGTCCGAAAAACAAATCCGGCCTCGCTCGGGGATGGGGCTTCGCCC
GAAGCCGTGGCGGAGCAACGCGCGCGTGTGACGGCCGCCTTTGAACTAGG
AGTGAGGCAAGTGGGGGTGCTCGTGGACGCGGCTCCCTTGTGGTGGGACT
ACATTCGTTACGTGGAAGCGTGGAAGGACGAGAATGGGCGggatggtggg
ggggagggcggctttgggggggggTACGGCGGGATCGCGGttgcggaggc
gggcagcAAAATCGCCACCCTCCGCCGGATCTACCACCGGGCCGTCCTGG
TCCCCGTCGACGGGTTGGACGAGTTATGGCGGGCGTACGAGGCGTGGGAG
AAAGGCTTGAACGAACACACGGCGCGACAAACCCTTCCGCaactcctccc
tggccaccaGCAGGCGAAGACTGTGGCGCGGGAACGTCGTACCATCCGGG
ACCTGCAGAGACTTTCCTCTTGGgcgaccccgccctcccacacggcagag
gagaaggagcaacTTCACTACTTGCGGCGCAAAATTGACTTTGAGAAAAG
CAATCCGGAGAACGTGGATCCGGTGGCGCTGAAAGACCGAGTCCGCTTGT
CTTATCGGCAAGCATTTGCCTATTTCTATCATTTCCCCGAGGTCTGGTAC
GAATTTGCGGCCTACGAACAGGAAAGTGACGACGTggtggccgccgcgtc
cctTTTTGCCCGGGCCGCGCGGGCAGTGCCGGactgcctgctccttcatC
TGGCTTGGGCAGAGCTTGAGGACGGCCGGGGCcgaggggacaagggggcC
GAGATTTTGAAGGGCTTTCTGATCCAAGAGCCGAGCACGTTGGGGTACGT
GGCATACCAACACTACGTTCGACGGACGcagggaaaagaagcggCGCGGA
AGGTGTTCACCGCCACCAAGGATTTGCGCCGGAAGGGCGTCTTGACCTAC
CACTGGTACTTGGCCCATGCCCAGTTGGAGGAGCACGTGAACCACGAGCC
GCAGGTGGCCCGACGGGTCCTTGACCACGGTCTCAGCTTGcactcctcct
ttctcacgGAGCCCGAGTACGTGGTTGCGACCATGGAGGTGTTGATCCGC
CTTCAGGATGAGCAGAACGTCCGCAGTTTGGCTGATCGGGCCTTAGCCGt
gttggaggcaggggtctcggcaggccctggagcaggaggggaacgggaag
aggtggcgacGGCAGCCGCGGCCATGGCTGCCGCGGAGAAAGCGCGGCCC
ATTTGGTTCAAACTCTTGGAATTTGAGACGTGCGTGGCGAGCGACCGGGA
CCCCGCCCGGGTCGAAAGAGTGCAACAACGCATCGCGGAGGCCTTCCCCC
GGCAGGCAGAATCACACCCCTTGTTGCGTCTGTGGCGACGCCTGAACATG
TTTGGAACTCCTCCTGTAGAAGACAGTTCGGACGACCTGTTGAGAcagag
gtgggaggagccggcggtGAGCTACAGGCTGCTggatgacggggagaggg
atgggtggggtacagggggaggaaggagaggaaggaagcccgggaagaga
ggggcgtcttcggctgcgggaggagaggtaaCGGTTGGTGCAGGGGACGA
TGCTGGtggaggtagagagggagggagggaaggaggaggggatggcgtgg
gaggcggcgatgggggcgtggacggggagggacggcctGCCGTGAGTCGG
GAGGCGCGGCGTCGGGATGACCCCTACGGCGCAAGAGCTTTGCAGCAACG
GCGGTTGCAGAGCATCCCCGAATACCTCCGCAAACTCTACCAGATGTTAC
CCATCCATACCGGTCCACCCATCGACCCTGACACGATCATCCGGGGACTC
AGAGACAACCCTTTGCCACCTCGGCCACCAGGACAGTCGAGCGGAGGGAG
TAAGATGTTGgggaacggggaggggggggagagggggaaggggaggggga
ggaaaaggggccgatgggggggtggaggggactCGGACAGCGGGGATAGT
GACGACGACATGATGaggtcgggggcgggggacgtTTTTCGacaacggca
gcagcagaagctgATGGCCGGCACCTAAATGACTGGGTGGGGTGCTTAAg
aaagggcgaagggggtcAACCTTTCCTGCAGGGGAAATTTCGCAAGTGCC
TGGCCGCGGTCGTGCGTTCTGGACGAATTATCCGCACTCCCTGGAAAGGA
ATAAAGCCAAACGTGTTACC

Coding sequence (CDS) from alignment at CM002471.1:233772..236691+

>rna7284 ID=rna7284|Name=rna7284|organism=Nannochloropsis gaditana|type=CDS|length=2607bp|location=Sequence derived from alignment at CM002471.1:233772..236691+ (Nannochloropsis gaditana)
ATGGCCGCTGCCATCGAAGTGAATGCGCCGTTCCTGGGAGTGGACTCTga
ttcggaggaggaggacgaagaaatcGTGCCCACCACGGCAGTGAGCCGTG
CAAGAAGCAgcgctcctcctttgccAAAAGCCATCATCACATCTAGGGGC
GCCGACATTCCCACCCCTACTTCAGTGAAAAGGCGGCAGAGCTTGGGAGG
CCTGGCTTTGTCTACTGCTTTCACCGAGGCACAGCTTCTGTCAGCGTCGG
ACCGCTTTCGGGATGCATGGTCGAAGGTCCAGGCGCATGAATGGGACGTG
CGGTCATGGGCTGCTCTCCTGAGCGAAGCGCAGACCCAGCGCTCGGGGCG
TGCAATTGCTCTTCGGGATGTTTATCGTCTGGCTACGCGCCAGTTCCCTA
CGAAGGTGAGCCTCTGGAAGGACTGGCTGGAGCACGAGTTGCGGCAGGGG
AATCTGGCCCAGGTGGACGACATCTTTCGGGAATGCCTCTTGGAGGTCCC
TTCCGTGGACCTGTACCTCCTCTACGTGGCGCGCGTCCGAAAAACAAATC
CGGCCTCGCTCGGGGATGGGGCTTCGCCCGAAGCCGTGGCGGAGCAACGC
GCGCGTGTGACGGCCGCCTTTGAACTAGGAGTGAGGCAAGTGGGGGTGCT
CGTGGACGCGGCTCCCTTGTGGTGGGACTACATTCGTTACGTGGAAGCGT
GGAAGGACGAGAATGGGCGggatggtgggggggagggcggctttgggggg
gggTACGGCGGGATCGCGGttgcggaggcgggcagcAAAATCGCCACCCT
CCGCCGGATCTACCACCGGGCCGTCCTGGTCCCCGTCGACGGGTTGGACG
AGTTATGGCGGGCGTACGAGGCGTGGGAGAAAGGCTTGAACGAACACACG
GCGCGACAAACCCTTCCGCaactcctccctggccaccaGCAGGCGAAGAC
TGTGGCGCGGGAACGTCGTACCATCCGGGACCTGCAGAGACTTTCCTCTT
GGgcgaccccgccctcccacacggcagaggagaaggagcaacTTCACTAC
TTGCGGCGCAAAATTGACTTTGAGAAAAGCAATCCGGAGAACGTGGATCC
GGTGGCGCTGAAAGACCGAGTCCGCTTGTCTTATCGGCAAGCATTTGCCT
ATTTCTATCATTTCCCCGAGGTCTGGTACGAATTTGCGGCCTACGAACAG
GAAAGTGACGACGTggtggccgccgcgtccctTTTTGCCCGGGCCGCGCG
GGCAGTGCCGGactgcctgctccttcatCTGGCTTGGGCAGAGCTTGAGG
ACGGCCGGGGCcgaggggacaagggggcCGAGATTTTGAAGGGCTTTCTG
ATCCAAGAGCCGAGCACGTTGGGGTACGTGGCATACCAACACTACGTTCG
ACGGACGcagggaaaagaagcggCGCGGAAGGTGTTCACCGCCACCAAGG
ATTTGCGCCGGAAGGGCGTCTTGACCTACCACTGGTACTTGGCCCATGCC
CAGTTGGAGGAGCACGTGAACCACGAGCCGCAGGTGGCCCGACGGGTCCT
TGACCACGGTCTCAGCTTGcactcctcctttctcacgGAGCCCGAGTACG
TGGTTGCGACCATGGAGGTGTTGATCCGCCTTCAGGATGAGCAGAACGTC
CGCAGTTTGGCTGATCGGGCCTTAGCCGtgttggaggcaggggtctcggc
aggccctggagcaggaggggaacgggaagaggtggcgacGGCAGCCGCGG
CCATGGCTGCCGCGGAGAAAGCGCGGCCCATTTGGTTCAAACTCTTGGAA
TTTGAGACGTGCGTGGCGAGCGACCGGGACCCCGCCCGGGTCGAAAGAGT
GCAACAACGCATCGCGGAGGCCTTCCCCCGGCAGGCAGAATCACACCCCT
TGTTGCGTCTGTGGCGACGCCTGAACATGTTTGGAACTCCTCCTGTAGAA
GACAGTTCGGACGACCTGTTGAGAcagaggtgggaggagccggcggtGAG
CTACAGGCTGCTggatgacggggagagggatgggtggggtacagggggag
gaaggagaggaaggaagcccgggaagagaggggcgtcttcggctgcggga
ggagaggtaaCGGTTGGTGCAGGGGACGATGCTGGtggaggtagagaggg
agggagggaaggaggaggggatggcgtgggaggcggcgatgggggcgtgg
acggggagggacggcctGCCGTGAGTCGGGAGGCGCGGCGTCGGGATGAC
CCCTACGGCGCAAGAGCTTTGCAGCAACGGCGGTTGCAGAGCATCCCCGA
ATACCTCCGCAAACTCTACCAGATGTTACCCATCCATACCGGTCCACCCA
TCGACCCTGACACGATCATCCGGGGACTCAGAGACAACCCTTTGCCACCT
CGGCCACCAGGACAGTCGAGCGGAGGGAGTAAGATGTTGgggaacgggga
ggggggggagagggggaaggggagggggaggaaaaggggccgatgggggg
gtggaggggactCGGACAGCGGGGATAGTGACGACGACATGATGaggtcg
ggggcgggggacgtTTTTCGacaacggcagcagcagaagctgATGGCCGG
CACCTAA

Synonyms

Publications