rna7249, rna7249 (mRNA) Nannochloropsis gaditana

Overview
Namerna7249
Unique Namerna7249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length879
Alignment locationCM002471.1:119939..120971 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102201g1.6837.mrna
Orig protein idgnl|cribi|Naga_102201g1.6837
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:119939..120971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102201g1gene7014Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7249rna7249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23441.1cds7232Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7249 ID=rna7249|Name=rna7249|organism=Nannochloropsis gaditana|type=mRNA|length=879bp
AATGTCAGAACCTAAGCGTATATGCGGGCCAAATGCCTGATTTTTTTTGT
TTCCTATCGCCCTCGGGTTGTATTTTTGTGCAGGAAAAAGCGGGGCATAC
TGCACACAAGCAGAACAATTTTCCTTCGTCCTGAGGTGCCCAATTACCAT
CATTGCGGCCTTCGTGGAAGTCAAGCTGCACATGGCAATGTCCTTTTGTG
CATCTACCCGCCCGACCACGACGTTGGTACTACTTGTCCTCTTGAAAGTG
GCCACGACCTTCGCTTTCATCCCCCCTTCTCTACCATTTTCGCTGCCCTC
TAACACTCCAACCCTTTTTCACGCACGGCGCGAGCCCTTTGAAGCTTGTG
GTATCCATGCACAAAGGCCGCTTAATCGCTTGGCCGGTGCCGGCAATGAT
GGTTGGAACGACGAAGAAGACGTCCGCTTCTCGGGCTTGTCCAAGCACAT
TGACACCGGCTTTCTCAAGGTACGCGGCTCTTCGTTTCCTCGCCCGTCGG
ACTGGCACAGGCATTGTCTTTTTCACCGTTGAAGATCGAGCTTATGCCGC
CTTTGAACCCCAGTCTGAAAACATTCTCTGTCGTGAGAAAGCCGCCCCTC
TCTGGGAGGACCCACAACTTATGACCGCCGAAGCCTTGAACGAGATATTC
GCGCCCGATGAGAAGGAAAATATCATGCTCCTACGCTCCATGTGGACCGC
GTCCTGCATTTTCCGCCTTGATGGCATTTTCGTCGACTCGCTCGACCTCC
AGGCCAGGGTCTGGGAGCAGGTGGCCGAGGGCATATCCGGTACTCCTCCT
TCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCGGACCTCATCTTGC
CCGTGCATCCGCCCGCTAGCCCCCTTTCC
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protein sequence of rna7249

>rna7249-protein ID=rna7249-protein|Name=rna7249|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MMRRRRIGSRSPSTRLPSRSSSGRPTAGTLLSLPSSLPSSLPFSLSPFLP
SSLILSWRPLLHTSVLPLHTLPPPSSRHLPLALPPACSLRPSSPPSLPPS
LPPSLPQKLDRPSG
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mRNA from alignment at CM002471.1:119939..120971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7249 ID=rna7249|Name=rna7249|organism=Nannochloropsis gaditana|type=mRNA|length=1033bp|location=Sequence derived from alignment at CM002471.1:119939..120971+ (Nannochloropsis gaditana)
CGGAAGAGGCGGTCAGGCGTGTATTTGACTGGACGGATGAtgcgggtgga
gggagggagggagggagggagggagggagggagggaggggggaggagggt
ccgTTGACTACCTGCTCGAGAGGAATGTGATgattggaaggggagagaat
gCTTCGATCTTGAAAatcatcctccctctctcccatctctctctctccct
ccctccctccctctccctcccgcttcccttcctccctcttgtctaTTCCC
CCCCACACACAGAGGAGGCGCATCGGATCGCGCAGTCCTTCGACGAGGTT
GCCATCGAGGTCTTCGAGCGGGAGGCCGACGGCGGGTacactcctctccc
tcccttcctccctcccttcctccctccctttctccctttctcccttcctc
ccttcctctctcatccTTTCGTGGAGACCCCTACTTCATACAAgtgtcct
tcctctccatacacttccacctccttcttctcggcacctccctctcgcgc
TCCCACCTGCATGCTCGCTTCGCCCAtccagccccccctccctcccgccc
tccctccctccctccctccctcagaaGCTTGACCGCCCTTCCGGGTAGCA
TTGAGCTTCTCGCCGACTTGGCCGAGAGCGAGATACCCTCCTCCGTGCTA
TCCAACCTCCCTTTGGAGGTGATCGAGAAAGTTCTAGAACGAATTGGCAT
CAAAGACTTGGTGGAATGCATTGAGACCTACGACGATCGCCTTAAGACGG
AAGCGCAGGTGGAGTTgcaccccttcccccctttcctcgcccccttcctc
ttccccttcttcggaAAAACCGGCAGGCGACCACTAATCCAgctgtccct
tcccctctccctccctccctctatctctccctcttttcctccctccgtcc
ctccccctcagctCCTCCTGAACGCCTGCTTGGAAATGgagcgccccccc
cggcacgCTTGTTTTTTCGATTTCTCCGCCCGAGGCATCGATACCGCCCA
TGACAACGACATGCGGGTcggtcccttcccccc
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Coding sequence (CDS) from alignment at CM002471.1:119939..120971+

>rna7249 ID=rna7249|Name=rna7249|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002471.1:119939..120971+ (Nannochloropsis gaditana)
ATGAtgcggAGGAGGCGCATCGGATCGCGCAGTCCTTCGACGAGGTTGCC
ATCGAGGTCTTCGAGCGGGAGGCCGACGGCGGGTacactcctctccctcc
cttcctccctcccttcctccctccctttctccctttctcccttcctccct
tcctctctcatccTTTCGTGGAGACCCCTACTTCATACAAgtgtccttcc
tctccatacacttccacctccttcttctcggcacctccctctcgcgcTCC
CACCTGCATGCTCGCTTCGCCCAtccagccccccctccctcccgccctcc
ctccctccctccctccctcagaaGCTTGACCGCCCTTCCGGGTAGATGAt
gcggAGGAGGCGCATCGGATCGCGCAGTCCTTCGACGAGGTTGCCATCGA
GGTCTTCGAGCGGGAGGCCGACGGCGGGTacactcctctccctcccttcc
tccctcccttcctccctccctttctccctttctcccttcctcccttcctc
tctcatccTTTCGTGGAGACCCCTACTTCATACAAgtgtccttcctctcc
atacacttccacctccttcttctcggcacctccctctcgcgcTCCCACCT
GCATGCTCGCTTCGCCCAtccagccccccctccctcccgccctccctccc
tccctccctccctcagaaGCTTGACCGCCCTTCCGGGTAG
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Synonyms
Publications