EWM23442.1, cds7229 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|585104474|gb|EWM23442.1| (endoribonuclease l-psp [Nannochloropsis gaditana]) HSP 1 Score: 482.641 bits (1241), Expect = 2.082e-172 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0 Query: 1 MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED Sbjct: 1 MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|553188095|ref|XP_005854737.1| (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >gi|422294326|gb|EKU21626.1| endoribonuclease l-psp [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 373.629 bits (958), Expect = 4.934e-130 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 Query: 52 MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED Sbjct: 1 MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|299116967|emb|CBN75071.1| (putative Translation Initiation Inhibitor [Ectocarpus siliculosus]) HSP 1 Score: 221.476 bits (563), Expect = 5.326e-70 Identity = 100/155 (64.52%), Postives = 128/155 (82.58%), Query Frame = 0 Query: 81 QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 + +HTEAKL E+G++LP P P GNF M V++G ++Y SGHLPT G+ TGKVG E++ EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE +D Sbjct: 17 RSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 171
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|585104425|gb|EWM23409.1| (endoribonuclease l-psp [Nannochloropsis gaditana]) HSP 1 Score: 216.083 bits (549), Expect = 2.341e-68 Identity = 101/142 (71.13%), Postives = 124/142 (87.32%), Query Frame = 0 Query: 83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP 224 + EA+L ++G+ LP PKGN+A+AV++G +++L+GH+P NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP Sbjct: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP 143
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|568024052|gb|ETL98094.1| (hypothetical protein L917_04769 [Phytophthora parasitica]) HSP 1 Score: 213.001 bits (541), Expect = 7.903e-67 Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0 Query: 69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 I +S ++A + + +H E K+ E+G LP PKGN+ +V+SG IY++GHLP A G L+ GKVG +++PE+ AA +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED Sbjct: 5 IRMTKSRSLASAVRNVHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|570332508|gb|ETO80456.1| (hypothetical protein F444_05101 [Phytophthora parasitica P1976]) HSP 1 Score: 212.616 bits (540), Expect = 9.939e-67 Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0 Query: 69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 I +S ++A + + +H E K+ E+G LP PKGN+ +V+SG IY++GHLP A G L+ GKVG +++PE+ AA +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED Sbjct: 5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|675187047|ref|XP_008902408.1| (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|566028793|gb|ETI51704.1| hypothetical protein F443_05052 [Phytophthora parasitica P1569] >gi|567966071|gb|ETK91529.1| hypothetical protein L915_04923 [Phytophthora parasitica] >gi|567994790|gb|ETL44940.1| hypothetical protein L916_04870 [Phytophthora parasitica] >gi|568054480|gb|ETM51260.1| hypothetical protein L914_04873 [Phytophthora parasitica] >gi|568097696|gb|ETN12438.1| hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|570956494|gb|ETP21488.1| hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >gi|970663543|gb|KUG00690.1| hypothetical protein AM587_10006148 [Phytophthora nicotianae]) HSP 1 Score: 212.616 bits (540), Expect = 1.085e-66 Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0 Query: 69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 I +S ++A + + +H E K+ E+G LP PKGN+ +V+SG IY++GHLP A G L+ GKVG +++PE+ AA +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED Sbjct: 5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|570991647|gb|ETP49338.1| (hypothetical protein F442_05119 [Phytophthora parasitica P10297]) HSP 1 Score: 209.534 bits (532), Expect = 1.625e-65 Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 0 Query: 69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 I +S ++A + + +H E K+ E+G LP KGN+ +V+SG IY++GHLP A G L+ GKVG +++PE+ AA +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED Sbjct: 5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEHKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|673021132|ref|XP_008864527.1| (hypothetical protein H310_02708 [Aphanomyces invadans] >gi|574479458|gb|ETW06452.1| hypothetical protein H310_02708 [Aphanomyces invadans]) HSP 1 Score: 205.682 bits (522), Expect = 5.285e-64 Identity = 93/158 (58.86%), Postives = 126/158 (79.75%), Query Frame = 0 Query: 78 AGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 A ++ +HTEA++ E+G LP PKGN+ +V+ G +I+ +GHLP A G+L+ GKVG +++PEE AA +AL L+++LK+E+GDLDRVKRIVK+VGFVNCVDGF+ QP V+NG SD V++FGD+G+HARSAVGTNALPL IPVE+E IVE++D Sbjct: 11 AAARFVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|970659151|gb|KUF96816.1| (hypothetical protein AM588_10007953 [Phytophthora nicotianae]) HSP 1 Score: 202.986 bits (515), Expect = 6.645e-63 Identity = 96/168 (57.14%), Postives = 128/168 (76.19%), Query Frame = 0 Query: 69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235 I +S ++A + + +H E K+ E+G LP PKGN+ +V+SG IY++GHLP A G L+ GKVG +++PE+ AA L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED Sbjct: 5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAT----TLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 168 The following BLAST results are available for this feature:
BLAST of EWM23442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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