rna7219, rna7219 (mRNA) Nannochloropsis gaditana

Overview
Namerna7219
Unique Namerna7219
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length958
Alignment locationCM002471.1:40379..41253 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100428g1.6937.mrna
Orig protein idgnl|cribi|Naga_100428g1.6937
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:40379..41253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100428g1gene6981Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7219rna7219-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23473.1cds7202Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7219 ID=rna7219|Name=rna7219|organism=Nannochloropsis gaditana|type=mRNA|length=958bp
TTCGTTCAACAGAGGTCCGCTTAAATCAAGATACGAATGCTCTCCGATAC
CAAAGAGACCGGCGGCAGCACTGTTGAAAATAATTCCCAGGTCAAGGCAC
ATTATGACGCGTTGTTGGGCAGAACATATACCTGGATGATGGGCGGAGCG
TCAACCAACTTCGAGGAAAATCGAAAATTTTTCGACCTTCATGGTCTGAG
GCCACCAACAGTAGATGCCAAGGCCCTGGATCTCGGCTGCGGGAGCGGCT
TTCAAGCCATCCCCCTCCTCGAGCTCGGGTACGCCGTTATCGCCATAGAC
ATGAGCGCCGACCTCCTACAGGAACTGAAAGGACACAAAGAGGCCCTTGC
CAGGAAGGTCAGCGGCCAATCGCCCCTCCCCTCGCTCACGCTCATCGAGG
GAGACATTTTACGTCTGAGAGCCCTTCTCCCTTCCGACGCCCTCGCCTCC
GTCGACCTGGCGGTGTGCATGGGCGACACCTTAACCCACCTGCAGTCGAC
AGCGCAAGTACAGTCGTTGGTTAAAAATGCCGTCTCCTTTCTTAAGCCAG
GAGGGACCCTAATCCTCCACTTCCGAGACCTGACGCGCCACCTAGAGGGC
ACGGACCGCTTCTTGCCCTGTCGCACGGACGAGAACAACATCTTCACCTG
CGTCCTTGAGTACGAGGAGGCTCAGGAGACATTTCTGGATGGCAGAGACA
AGGAAGACCGCTTTGTTCTCATCAATGACCTTCTTTATACCCGTCCCGAC
GCCTCCGCACCATGGACATTCAAAAAGTCGCAGTACAAAAAATTGGAGGT
ACCACCCGAAGAGGTGCTCAAAATGATGCAAGATGCAGGCATGGACACGT
CTTTCCACCCCCTCGCCTTCGGGGTGGTGGCTGTTATGGGGAGAAAGAAA
CCGTGAACACGTCGGGGGAAATCACATAAAAAGAAAAGAAAAACTGTTAC
GGGCCTTA
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protein sequence of rna7219

>rna7219-protein ID=rna7219-protein|Name=rna7219|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MSIMANRRCRGGGGGDILKAPNILLSLLLLVSICSVGLSFDFRLKMAAAK
KGGSSTSLAAAQGGGVAVGASVGGSVNGGNAMKTLTRNAVQRPSTPSSSF
ALGSWRHALVQPPPSSPSPSTSSTKKAASPFLYGMIDESTPLKLGAALMR
GVAERFWVVSERFDVLQASLDKMAR
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mRNA from alignment at CM002471.1:40379..41253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7219 ID=rna7219|Name=rna7219|organism=Nannochloropsis gaditana|type=mRNA|length=875bp|location=Sequence derived from alignment at CM002471.1:40379..41253+ (Nannochloropsis gaditana)
TTTCCGTGCTGCCGCGACCGCCATGTCCCATCGTGCTCTTACCGACATTG
CAATATCGTACACAGAGTCCTGGCCGCATGAGTATTATGGCGAACCGCAG
GTgccgcggtggtggtgggggtgatATTTTAAAGGTAAGCGCGACCGAAC
AACGTATCACAGCTTCAaaccctcgtctcctccatttccctccccattct
tACTTCCTCTTTACTCACTTCAAATCTATCCCAGGCACCAAACATCTTGC
TTTCCTTGCTGCTCCTCGTCTCTATATGTTCCGTGGGGCTTTCTTTTGAT
TTTCGCCTAAAGATGGCAGCGGCCAAGAAAGGCGGGAGCAGCACGTCTCT
AGCAGCCGCTCAAGGCgggggcgtggcggtggGCGCGTCCGTGGGAGGTA
GCGTCAACGGGGGCAACGCAATGAAAACGCTGACAAGAAATGCTGTCCAG
CGGTATGTAGGCATGAAGGACTGGGCGGTGCGGAGGTGCAGGGACAGTCG
TGTTGGCAAGACGCAGGAGTGTCGTCGAGGGACCATGCGGATCCTGCTGa
tttttctcttccaggCAAtcccctcactcccccctcgctccccatTCGCG
CCCCCTCTCTCCGACCATCAggccctccactccctcctcctcgttcgccT
TGGGGTCGTGGCGGCATGCGTTGgttcagcctcctccctcctccccttcc
ccttccacctcctccaccaagaaggcggcctcccccttcctctacgGCAT
GATCGATGAAAGCACGCCTTTGAAATTGGGGGCTGCCCTGATGCGTGGGG
TGGCGGAACGGTTCTGGGTGGTGTCTGAACGCTTCGATGTACTTCAGGCA
TCCCTAGACAAGATGGCCaggtagg
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Coding sequence (CDS) from alignment at CM002471.1:40379..41253+

>rna7219 ID=rna7219|Name=rna7219|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at CM002471.1:40379..41253+ (Nannochloropsis gaditana)
ATGAGTATTATGGCGAACCGCAGGTgccgcggtggtggtgggggtgatAT
TTTAAAGGCACCAAACATCTTGCTTTCCTTGCTGCTCCTCGTCTCTATAT
GTTCCGTGGGGCTTTCTTTTGATTTTCGCCTAAAGATGGCAGCGGCCAAG
AAAGGCGGGAGCAGCACGTCTCTAGCAGCCGCTCAAGGCgggggcgtggc
ggtggGCGCGTCCGTGGGAGGTAGCGTCAACGGGGGCAACGCAATGAAAA
CGCTGACAAGAAATGCTGTCCAGCGgccctccactccctcctcctcgttc
gccTTGGGGTCGTGGCGGCATGCGTTGgttcagcctcctccctcctcccc
ttccccttccacctcctccaccaagaaggcggcctcccccttcctctacg
GCATGATCGATGAAAGCACGCCTTTGAAATTGGGGGCTGCCCTGATGCGT
GGGGTGGCGGAACGGTTCTGGGTGGTGTCTGAACGCTTCGATGTACTTCA
GGCATCCCTAGACAAGATGGCCaggtagATGAGTATTATGGCGAACCGCA
GGTgccgcggtggtggtgggggtgatATTTTAAAGGCACCAAACATCTTG
CTTTCCTTGCTGCTCCTCGTCTCTATATGTTCCGTGGGGCTTTCTTTTGA
TTTTCGCCTAAAGATGGCAGCGGCCAAGAAAGGCGGGAGCAGCACGTCTC
TAGCAGCCGCTCAAGGCgggggcgtggcggtggGCGCGTCCGTGGGAGGT
AGCGTCAACGGGGGCAACGCAATGAAAACGCTGACAAGAAATGCTGTCCA
GCGgccctccactccctcctcctcgttcgccTTGGGGTCGTGGCGGCATG
CGTTGgttcagcctcctccctcctccccttccccttccacctcctccacc
aagaaggcggcctcccccttcctctacgGCATGATCGATGAAAGCACGCC
TTTGAAATTGGGGGCTGCCCTGATGCGTGGGGTGGCGGAACGGTTCTGGG
TGGTGTCTGAACGCTTCGATGTACTTCAGGCATCCCTAGACAAGATGGCC
aggtagATGAGTATTATGGCGAACCGCAGGTgccgcggtggtggtggggg
tgatATTTTAAAGGCACCAAACATCTTGCTTTCCTTGCTGCTCCTCGTCT
CTATATGTTCCGTGGGGCTTTCTTTTGATTTTCGCCTAAAGATGGCAGCG
GCCAAGAAAGGCGGGAGCAGCACGTCTCTAGCAGCCGCTCAAGGCggggg
cgtggcggtggGCGCGTCCGTGGGAGGTAGCGTCAACGGGGGCAACGCAA
TGAAAACGCTGACAAGAAATGCTGTCCAGCGgccctccactccctcctcc
tcgttcgccTTGGGGTCGTGGCGGCATGCGTTGgttcagcctcctccctc
ctccccttccccttccacctcctccaccaagaaggcggcctcccccttcc
tctacgGCATGATCGATGAAAGCACGCCTTTGAAATTGGGGGCTGCCCTG
ATGCGTGGGGTGGCGGAACGGTTCTGGGTGGTGTCTGAACGCTTCGATGT
ACTTCAGGCATCCCTAGACAAGATGGCCaggtag
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Synonyms
Publications