rna7217, rna7217 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7217
Unique Name	rna7217
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	870
Alignment location	CM002471.1:33223..35849 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100428g3.6935.mrna
Orig protein id	gnl\|cribi\|Naga_100428g3.6935
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:33223..35849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100428g3	gene6979	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7217	rna7217-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23471.1	cds7200	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:33223..35849+
coding sequence from alignment at CM002471.1:33223..35849+

mRNA sequence

>rna7217 ID=rna7217|Name=rna7217|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
GGGGNGGGGGCGGACCTTGGAGGAAGGGACAGACTGGTCCTACTAAAACC
CGAGGGAGGAGGGGCTAGAGGTGGGGACGAGAAGAAGAAGGAAAGCAAAG
GCCGGGAAAAATCTCGCGTGGACAAATCTCAGCATCCATTCATCTCTGCC
TCTTTCGCCGACGTCCGATCACGTCGGGCGAGGCATTCGAGAGGCGATCC
CCTTACCGCATATCCCGCCGTGATTCTCGCCCTCGTTCTCGTTTTCCATT
TTTCCATTCCCTTCCCCACAGTAATCGATTTGAAGGAAATGGGCTTCGAC
GGTCAGGAGCCCTCCATCCTCAAAGAGGCGCGGGAAACCGTGCAAAGAGA
AGAACCGGAGCTTTGGGACTCGATTTTCCGTGAGGACCCTATTGCCCGAA
AATACATGGAAGCCCCCGAGACGGTCCTCAAGGACGTGATCGATTTGACC
TCAGAATTTGAGACAAATTTAAAGGGAAAGACCACGCTGAATTTTGGGAC
GGCGAGTGTGTGAGGGGAGTGGAGGGAAGATTTCTGGTGCCCTGTTGAAG
AGAGGCGCGGTGTGGAAGGCGCTTGGGACATTGTTGGCTTTCCAAAGAGG
GAAGAATAGGACGCTTGTCGTATATTCTGTACGATGAAAGCCTCGGATCT
TGTTCTAGTGGATTGTATCTATACAGGTGTACATACAAGATTTAGCGTAC
TCGTACGAGACGACTGCTTGTCTTTGAACATCAGAAGGAGAATAAAGCCG
AGGAAAAGCTGGCTTTGCAGGCCATCTTAATTGGACTCACAAAAGCAGGA
CAACGAAAACAACTCTTTGAAATAAAATAGGCAATGGAAATTGTGAAAAT
CGCTTTAAGAACCTCCCCTT

protein sequence of rna7217

>rna7217-protein ID=rna7217-protein|Name=rna7217|organism=Nannochloropsis gaditana|type=polypeptide|length=699bp
MIIWQGGATFAYTISQAFFGVGGSAYIGAGTGIFNGIPQMRASLTASSSG
CGFYNFVGAGSLTHIYLPSFSVNLVRFITGIATDFFVGMGWANSINNTRF
SFQLANSYFGTASQAFVGIGGAVFIRSYIVTKRRYNFAGPSPFSIVVGGT
GAISSETRGQNFFISKNGITRFIYNKTTKSVTQISTPRAQKTLSPTALKP
GKWKRKMGGIGGHRKAQRGVETAGPSQAGATTMGGWLKEIMDATGGLDPS
IAKNNKVVVVQTTLLEGRSHSFTAPHPDAFKSPELKGRWGGYAKILADGL
VEIQDKKAQESTRTLGSVKGGSGGYQPGLISANNSECFLCSVHPGRTLDH
VGGPDACETSEACDADNPVDAYVQAQGLTNLNIMPPPGALPGVSGWANAS
LADTWLLWSELVVYCQHRDPGEDDASIERDCLTKEYVTEVLKSFIALNAT
DGTEYQITLSQGGLHPVATLSTFHLEHEDSAMSELRSRLAPAWNPDCQGW
TKFDVQVTASESEAEQHLLDVFEEFYEDPTDLRLTLIENWDPSEDIQPCG
AVMTEKAEHRFPSIETMPAFRPSLTGSLGPDVTIADGVSITPPRTLVPGE
TYKVYVQNFPAGTKIILKLLAGLEQDGPVVDTIESFDDDGISELAWTAPR
DVDFSPKKYYLQATPAAFPVLFGNSQVFSFQDVADARKPRRRMFDFADV

mRNA from alignment at CM002471.1:33223..35849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7217 ID=rna7217|Name=rna7217|organism=Nannochloropsis gaditana|type=mRNA|length=2627bp|location=Sequence derived from alignment at CM002471.1:33223..35849+ (Nannochloropsis gaditana)
ATGATCATTTGGCAGGGTGGGGCCACCTTTGCCTACACCATCTCCCAGGC
CTTTTTCGGCGTGGGAGGCTCGGCTTATAtcggggcggggacaggcATCT
TCAATGGGATCCCACAGATGAGGGCCTCTTTAACGGCCTCCTCGAGTGGC
TGTGGATTTTACAATTTCGTGGGTGCAGGGTCACTTACACACATATACTT
ACCCTCATTTAGTGTGAATCTTGTCAGATTCATTACCGGTATCGCCACGG
ATTTTTTCGTAGGCATGGGCTGGGCGAACAGCATCAACAACACGCGATTT
TCCTTTCAGCTGGCCAATTCATATTTCGGTACTGCCTCGCAGGCCTTCGT
GGGCATCGGTGGAGCTGTCTTTATCCGAAGCTATATCGTCACGAAACGCC
GGTACAATTTTGCCGGCCCCAGTCCATTCAGCATCGTCGTTGGGGGCACC
GGCGCCATCTCTTCCGAGACCCGCGGTCAGAATTTCTTCATTAGCAAAAA
TGGGATCACTAGGTTCATATACAACAAGACGACCAAGTCGGTCACGCAGA
TATCCACGCCCAGGGCCCAGAAGACCCTGTCGCCCACGGCCTTGAAGCcg
gggaaatggaagcgCAAGATGGGCGGGATTGGGGGGCATCGGAAGGCTCA
ACGCGGAGTCGAAACTGCTGGTCCCAGCCAAGCGGGCGCGACCACCATGG
GTGGCTGGCTGAAAGAGATAATGGATGCGACAGGTGGCCTGGACCCATCG
ATTGCGAAGAACAACAAGGTTGTGGTGGTGCAAACGACGCTGTTGGAGGG
CCGCTCGCACAGCTTTACGgccccccaccccgacgCCTTCAAGTCTCCCG
AACTCAAAGGCCGGTGGGGCGGGTACGCGAAGATCCTGGCCGACGGACTG
GTAGAGATCCAGGACAAAAAAGCGCAAGAGAGCACCCGCACGCTTGGAAG
CGTGAAGGGCGGCTCGGGCGGGTATCAGCCGGGATTGATCTCTGCGAACA
ATTCGGAATGCTTCCTGTGTAGTGTCCACCCGGGGCGTACCCTTGACCAT
GTAGGGGGCCCAGACGCGTGTGAAACGAGCGAGGCTTGCGACGCTGACAA
TCCTGTGGATGCCTATGTGCAAGCTCAAGGCCTCACGAACTTGAACATCA
TGCCGCCCCCGGGTGCCTTGCCTGGAGTGTCGGGATGGGCCAATGCGTCC
TTGGCGGACACGTGGTTGCTCTGGAGCGAGCTTGTCGTCTATTGCCAGCA
TCGGGACCCTGGCGAGGACGACGCGAGCATCGAGAGGGATTGCCTGACCA
AGGAGTATGTGACGGAGGTGCTCAAAAGCTTCATCGCTCTGAACGCGACC
GACGGCACGGAATATCAGATCACCTTGAGCCAGGGCGGCCTCCATCCGGT
GGCGACCTTGTCTACCTTCCACCTTGAGCACGAGGACTCAGCCATGTCCG
AGTTGCGATCGCGGCTGGCCCCAGCGTGGAACCCGGATTGCCAGGGATGG
ACGAAATTCGACGTCCAAGTGACCGCGAGCGAGTCCGAGGCAGAACAGCA
CCTGCTGGATGTGTTTGAGGAATTTTACGAGGACCCCACGGACCTGAGGT
TGACGTTGATCGAAAACTGGGATCCATCGGAGGACATCCAGCCCTGCGGC
GCGGTGATGACCGAGAAGGCAGAACATCGTTTCCCATCCATTGAGACCAT
GCCCGCCTTCAGGCCCTCGTTGACCGGTTCCCTCGGCCCCGACGTGACAA
TTGCGGACGGCGTTTCTATCACCCCCCCAAGGACGCTCGTACCAGGCGAG
ACCTACAAAGTTTACGTGCAGAATTTCCCTGCAGGGACCAAGATAATTCT
CAAGCTGCTGGCGGGGCTCGAGCAAGATGGACCCGTGGTCGACACGATCG
AATCCTTCGACGATGATGGCATTTCTGAACTAGCGTGGACCGCGCCCAGG
GACGTAGATTTCTCTCCCAAAAAATACTACCTGCAAGCCACACCCGCAGC
CTTCCCAGTCCTCTTTGGAAATTCCCaagtcttctccttccaggACGTGG
CCGACGCCCGCAAACCGCGGAGGCGGATGTTCGACTTCGCGGATGTGTAG
CGAGACCACTCATACAGACGAGCGCAATCATCAGCGCAGGAAAGGGGTGT
GGATCAAAGCCTGGCTTGGACATTCCCCTCCTAATTTAGGAGTTGAACCG
GCGTTGCGTGGACGTCATGAATGAGAACGGAGCTGAATAAAATACTGATT
GAAAAGTGATGAAAACACCCCATCGACGATACGAAATAGAGCTTTCAAAG
CATAATAGGAGATTGAGCAGTCTGTGACTGCGTTGTGGCGGTCCATCTTC
CCTTACGGCCCCGGCGGCTGACGAGAAGAAGTTCCAGACAATGGCGCGAC
CCCAGAAAAGTAAACCTGACCTGACTGACAGTAGTATTTGTCGTCACAGG
GGTATGTTCGCGGACTCAGGGTTTCTCGCGAAGTAAAGTGATGCATCAGA
AGGGAAAAATCTGAATGACCCATGACCTCTGTGTAGGGGGCCAAGGCGCC
ATGAGGTATTTGTATCTATCTTTAAACCGATGCGAAAGCGAGCGataaaa
aggaaaaaaagcaaagtAGTTTTTGTC

Coding sequence (CDS) from alignment at CM002471.1:33223..35849+

>rna7217 ID=rna7217|Name=rna7217|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002471.1:33223..35849+ (Nannochloropsis gaditana)
ATGATCATTTGGCAGGGTGGGGCCACCTTTGCCTACACCATCTCCCAGGC
CTTTTTCGGCGTGGGAGGCTCGGCTTATAtcggggcggggacaggcATCT
TCAATGGGATCCCACAGATGAGGGCCTCTTTAACGGCCTCCTCGAGTGGC
TGTGGATTTTACAATTTCGTGGGTGCAGGGTCACTTACACACATATACTT
ACCCTCATTTAGTGTGAATCTTGTCAGATTCATTACCGGTATCGCCACGG
ATTTTTTCGTAGGCATGGGCTGGGCGAACAGCATCAACAACACGCGATTT
TCCTTTCAGCTGGCCAATTCATATTTCGGTACTGCCTCGCAGGCCTTCGT
GGGCATCGGTGGAGCTGTCTTTATCCGAAGCTATATCGTCACGAAACGCC
GGTACAATTTTGCCGGCCCCAGTCCATTCAGCATCGTCGTTGGGGGCACC
GGCGCCATCTCTTCCGAGACCCGCGGTCAGAATTTCTTCATTAGCAAAAA
TGGGATCACTAGGTTCATATACAACAAGACGACCAAGTCGGTCACGCAGA
TATCCACGCCCAGGGCCCAGAAGACCCTGTCGCCCACGGCCTTGAAGCcg
gggaaatggaagcgCAAGATGGGCGGGATTGGGGGGCATCGGAAGGCTCA
ACGCGGAGTCGAAACTGCTGGTCCCAGCCAAGCGGGCGCGACCACCATGG
GTGGCTGGCTGAAAGAGATAATGGATGCGACAGGTGGCCTGGACCCATCG
ATTGCGAAGAACAACAAGGTTGTGGTGGTGCAAACGACGCTGTTGGAGGG
CCGCTCGCACAGCTTTACGgccccccaccccgacgCCTTCAAGTCTCCCG
AACTCAAAGGCCGGTGGGGCGGGTACGCGAAGATCCTGGCCGACGGACTG
GTAGAGATCCAGGACAAAAAAGCGCAAGAGAGCACCCGCACGCTTGGAAG
CGTGAAGGGCGGCTCGGGCGGGTATCAGCCGGGATTGATCTCTGCGAACA
ATTCGGAATGCTTCCTGTGTAGTGTCCACCCGGGGCGTACCCTTGACCAT
GTAGGGGGCCCAGACGCGTGTGAAACGAGCGAGGCTTGCGACGCTGACAA
TCCTGTGGATGCCTATGTGCAAGCTCAAGGCCTCACGAACTTGAACATCA
TGCCGCCCCCGGGTGCCTTGCCTGGAGTGTCGGGATGGGCCAATGCGTCC
TTGGCGGACACGTGGTTGCTCTGGAGCGAGCTTGTCGTCTATTGCCAGCA
TCGGGACCCTGGCGAGGACGACGCGAGCATCGAGAGGGATTGCCTGACCA
AGGAGTATGTGACGGAGGTGCTCAAAAGCTTCATCGCTCTGAACGCGACC
GACGGCACGGAATATCAGATCACCTTGAGCCAGGGCGGCCTCCATCCGGT
GGCGACCTTGTCTACCTTCCACCTTGAGCACGAGGACTCAGCCATGTCCG
AGTTGCGATCGCGGCTGGCCCCAGCGTGGAACCCGGATTGCCAGGGATGG
ACGAAATTCGACGTCCAAGTGACCGCGAGCGAGTCCGAGGCAGAACAGCA
CCTGCTGGATGTGTTTGAGGAATTTTACGAGGACCCCACGGACCTGAGGT
TGACGTTGATCGAAAACTGGGATCCATCGGAGGACATCCAGCCCTGCGGC
GCGGTGATGACCGAGAAGGCAGAACATCGTTTCCCATCCATTGAGACCAT
GCCCGCCTTCAGGCCCTCGTTGACCGGTTCCCTCGGCCCCGACGTGACAA
TTGCGGACGGCGTTTCTATCACCCCCCCAAGGACGCTCGTACCAGGCGAG
ACCTACAAAGTTTACGTGCAGAATTTCCCTGCAGGGACCAAGATAATTCT
CAAGCTGCTGGCGGGGCTCGAGCAAGATGGACCCGTGGTCGACACGATCG
AATCCTTCGACGATGATGGCATTTCTGAACTAGCGTGGACCGCGCCCAGG
GACGTAGATTTCTCTCCCAAAAAATACTACCTGCAAGCCACACCCGCAGC
CTTCCCAGTCCTCTTTGGAAATTCCCaagtcttctccttccaggACGTGG
CCGACGCCCGCAAACCGCGGAGGCGGATGTTCGACTTCGCGGATGTGTAG

Synonyms

Publications