EWM23481.1, cds7196 (CDS) Nannochloropsis gaditana

Overview
NameEWM23481.1
Unique Namecds7196
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:24009..24359 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23481.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100262g1.3187.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:24009..24359 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23481.1 vs. NCBI_GenBank
Match: gi|585104549|gb|EWM23481.1| (hypothetical protein Naga_100262g1 [Nannochloropsis gaditana])

HSP 1 Score: 243.047 bits (619), Expect = 1.596e-81
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MTVVPDPLLQRPHVCFLASTCRVPYTRALFLASSPHVFQVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGGIWAGWKVQEGDEKRERQRRV 116
            MTVVPDPLLQRPHVCFLASTCRVPYTRALFLASSPHVFQVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGGIWAGWKVQEGDEKRERQRRV
Sbjct:    1 MTVVPDPLLQRPHVCFLASTCRVPYTRALFLASSPHVFQVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGGIWAGWKVQEGDEKRERQRRV 116
[Close]
BLAST of EWM23481.1 vs. NCBI_GenBank
Match: gi|553186132|ref|XP_005854367.1| (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526] >gi|553187649|ref|XP_005854649.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294406|gb|EKU21706.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294695|gb|EKU21995.1| hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 120.553 bits (301), Expect = 1.409e-30
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0 
Query:   39 QVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGGIWA 99
            +VCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEG   A
Sbjct:   70 RVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGATPA 130
The following BLAST results are available for this feature:
BLAST of EWM23481.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104549|gb|EWM23481.1|1.596e-81100.00hypothetical protein Naga_100262g1 [Nannochloropsi... [more]
gi|553186132|ref|XP_005854367.1|1.409e-3093.44hypothetical protein NGA_0167501, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7213rna7213Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications