rna7213, rna7213 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7213
Unique Name	rna7213
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2891
Alignment location	CM002471.1:23523..24904 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100262g1.3187.mrna
Orig protein id	gnl\|cribi\|Naga_100262g1.3187
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:23523..24904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100262g1	gene6975	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7213	rna7213-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23481.1	cds7196	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:23523..24904+
coding sequence from alignment at CM002471.1:23523..24904+

mRNA sequence

>rna7213 ID=rna7213|Name=rna7213|organism=Nannochloropsis gaditana|type=mRNA|length=2891bp
CCGTACCGGTGGGCTGATCTCGCCGCAGGTACAGCATCGCCATGGACACT
CAAAAAAAATATCAAGACCTTGGTACATCATCCAAGAATAAGTCCTGTCA
GAAATGCTACGATTCAAAGAGTAAATGCGACTTTAGCCTTCCTTGCGAGA
GGTGCTTCCGCCTAAATTTACCCTGCCGACCGCGAGTCCGTGGCTCTATG
ACCCACTCAGCCTCCAAGAGAACCCGGGGTTGTTCCAAATCAGCGTTGGG
AGACGAGGCAACCGGAAGCCCCTGTTGGCCTCCGCAGGAAAGTCTGCCCC
GACTAGGCGGGCCTGGCAAAGCGCCAAGGGTCGGTCAGGAAGGCAGGCAA
TGGGCAGGAAGAGACAGCTACACCAGCACCGAGGCCGCTAGCGAGGACGG
GGAGGAGGACGAGGGCGAAGGGTGCCAACCCGAAGGCTCGAACGCGTACC
GGCGGGACTGTGCGTGGGGACTGCTGCTGGAAAGGGCACGCTATGACTTT
CAGCGTAGCATGGGTACGCAACCGTCGGGAGAGGAATCGCCAATAAAGGC
TCAGCCTTCTAGGGCATCGGCGAGCAAGGAGGAGGAAAACGACGGGGACG
GGCAGAGCCTCTTGGAGACCATCCTGGAGCGGGTGGACAGGTCCCGCATG
GCCGAAGAGTTCCTAGACGCCTTCCACGCGGTGCAGAGGCGGGGAACGGT
TCACCGAGAGGGTATGGTGGGTATGCTCCGTCATTGGAAGAAGCTATCTG
ACCTGTCTGGGCAGGATCTGACGCTCGGCGTGGGCGCTGCCATCGCCAAG
GCGTTTCATGTCGAGCAATGGGAGCTCAGGTACCGCAGGAGAAATAAGGT
CTTCAACCGATCCGAATCCTCGGCCGGGAACGTTAGCCTTGGGAGCACGC
CAACTTCCAACTCCTCGCAAGGGCAGCTCTCGTCCAAGCGGTTTCTCACG
GCCGTCAAAGAGGGACCTCGGGGATTGCTTCTGGAGGAGTTGATGGCTGT
GGAGGCCGGTGCCGCGCGACTCAAGGCGTCTTCCCTCTTCCGTGAGCGCG
ACGACGGGTACACGGGCCTACTGCTGATCGAGGTGGACCGAACGGAGGAC
CGAGTCATCGTCGCCAGCAACCAGGCCTACCTGGACGTCTTCTTGGGCCC
CGGCTTCCTCCTCTCCGAGGGCCTGGCGCGGGGCTGCCTTGACCCCTTCC
TGTTTGCGGCCTTTGTGGCCCATAGCGACAGAGACACCTGGTTCCGCATG
AACCTGGAGGCCCTCTGCTCGCCCCGCTTCCGGCCAGAGGGAGGAAGCTC
GAGGGAAGGGGTGCCTCCGCGAGAAAGACTGCTGTACTCGGAGTTTTTGA
AGATCTTCAGTCGGGATGGTCACGTGCGTCTATATTGGGCGCGTCTCGCC
CAGCTGGAGGCGACCACGAGGGAAGGGGAAGAGGAGAAACTTCACTTCCT
ATTGTGGATGGAACCGGTGCCCGCCTCCAGATACATCACAGACCGCCCGG
AGAAGGCCACGCACAGCAAGACTAAGCTTTTCAAGCGGCGGCCTCATCCG
AAGATTGGGTCGTCATCGTTGACGGTGGCGGCCGATGGTGAAATGATGGG
GGAGAGGCCATTGGAGCAGGATGTTCCCGAGGGACAAAAGGGAAATGGAG
ATTCGTCAGGCTGCGGGGAAAGGCAGCAGGTCGCTCAACAGAAAAGCGGC
CCGCCAATTTTACTCTTCCCTGCTTTAGCCTCCGTGCCTCTCCCTCCAGG
GGTCACCCTTCCTTCTTTCCCTTCGAGCTGGACCATAAGCACTGACCAAG
CCAGGACAGGGAGACAAGCCGCCGCCTTTTCTCCGTCGTGCTTCCCACCG
CTTGCCTCTCCCTCTCCTTTCACACTCCATTCCTCTGACTCTTCCCCGCA
GCCCCTTGCTTCAACGCTCCCGCACATTTTTGAGATCAAGAGCGAATTTA
TTAGAGATCTACTCCGCACTGCCCATAAGTCCGTACCTGCGGCCAAGGCG
CATGGAAAGGACACCGTGACGAATTCTGTCATCGATGCCGAATGTAAACG
GGTCACAAATAAGCAAAAAGTACGGCGAAATAAATTTCTTTTAAGTAAGA
TTTCACGCTCGCAGGAGCAAAACGAGGTTCGAGAAATCTTTCGAACGACT
GCAGGGCCAAAGCATCTGCCGCCCCAGCACGAGCAACAACAAGAAGAACA
AAAACAAGAACAACCACAAAAACGACAACAACAACAACAACAACAACAAC
CACCACCACCAGGGCAGCCACAGGAACAGCAGATGCCCATCTTCCCATTT
TCAAAATCATCCCACTGCCTACCATCCGGTATGAGCATAGGCTGGGAGAT
GGAGCAGCAATGCCAGAGGCACCCACTTGTCTTCCTGCACGCACATCAGA
AGATTTGCTCGGGAGGGGAGCATCCTCCACCCTTCGGACAGACTAACCAG
GAGTATGACTTGAACGTCGGTGCATTCATGCTTTCACCTGCTGCGATGTC
GAACGACCAGCAGCTTAATGAGCACCATGTAACACAGATAAGAAACCATG
AGGCATGGTATCCTGCTTCGGTTGGGGCAAAGCGACGACAGTATGCAGAG
AAGCAAGAGCATTTTAGGGAAAATTTCCAATATGTGGACGTTAATTCACA
AGAAAGCAATGAAGAACATCGGCAACCCTTCTTACGAAGGCAATTTCAAC
ACGAGCTAGAGCAAGGATGTTCCATGTCTTGTTGGCCGCCCTCGACGCCA
TGGCAGAGAGTCCAATCACGACCAACGCAGCAAGAAGAGCACAGGCAGCC
GCTATCTTCGATACCACACTCTAAATCAAGGTTAGGGACTGGACTGTTCT
TACTTAGCATGGCAGCTGCGCAGAGCAATTGTGACGTTTGA

protein sequence of rna7213

>rna7213-protein ID=rna7213-protein|Name=rna7213|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MTVVPDPLLQRPHVCFLASTCRVPYTRALFLASSPHVFQVCTDDSVCGSG
QLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGGIWAG
WKVQEGDEKRERQRRV

mRNA from alignment at CM002471.1:23523..24904+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7213 ID=rna7213|Name=rna7213|organism=Nannochloropsis gaditana|type=mRNA|length=1382bp|location=Sequence derived from alignment at CM002471.1:23523..24904+ (Nannochloropsis gaditana)
GTCGGACGGCGGAGACGACATAGCAGACTTTTACCCAAAGAGACTCGGGA
AGGACCCTCTCGTGAACACGTTGGCAATTGTAAGGAAACTTGTGCATGTA
CTTGGTCGTGATACGATGATAGATTCCTTTTTGACAGCAATGCACGCATT
TCTTATATAGATGGCGCAGGGCTGCCTggttgtggaggagaaagggaaaa
gaagaaatctACCCCGGAAGGCGTATTTCCCCGCAAAAAGCTTCTGGCAT
TCCAGAATACCCATCATAATACATCTtatcttcttcctgctcttcgTCGT
CGCGTGCTCTTCAGCGGATCCTCCCATCCAATGTGCTGCACAAAGCTCCG
AAGcagccttgcctccttcggAAGATGCTGCGTGCGTCTGCGTGGACAAT
TGGACAGGACCGGAATGTCGTGTAAGCCAAATCATTCGGCAGAGGATGAG
CGGGTATATTTTCTTTGCATTTCGCTACGATAGGGAATGACGGTAGTCCC
TGATCCTTTGTTACAGAGACCACACGTCTGCTTCCTAGCATCTACATGCA
GGGTGCCTTATACGCGcgctcttttcctcgcctCATCGCCCCACGTCTTC
CAGGTGTGCACAGATGACTCCGTGTGCGGTTCTGGGCAGCTGTGTCGACA
TGCACTGCCGATGTACCAGCGGCTCGAAGGGGTCTGCAACATCTTCACCA
AGGGTTTCGcggattttttggggggagcTGGAACCCTGGCGTTGCAAATG
GGCATGACCGACAGCGAAGGAGGTATATGGGCAGGGTGGAAGGTtcagga
aggggacgagaaaagggagaggcagcGTAGGGTCTGAGGGTCGTTGAGGG
GGTGGAGCGCTCTCGGAGACGGTCTGGGTGCCGTCCGGGCATTGCGACGA
CGCTCACGCTTCTGGGGAATTTTTCTCCACTTCTTggaattttcctcccc
cctctcctgcctccctcagcgACGCCTGCTCCGGATGCTGGCTTGCTCGA
CCTGACAGTCTTCGCGAACCCCTCCCCGGGTATCTTTCGACCAGTCTTCT
CGTGCGCGGGCCGCCAGTGCCTGCtcagcaaggagaaggactcgCCAGGG
GCAGCGGGCGGGGCCCGTGTGGGCATGCAGTGCCAGCAGAGCTCCTGCAC
CGCCCTCTGCGACAAGGCTGAGGACGCGTTTTGCATCGATCTGATGCTCC
AGCTCTTGGCGAGCATCGGGGAGACCGGCACCCTGGACCTGATCTGCGAG
GCCGACGGCGACTCCTGCGTGATGCACGAGGCGGTGCTCGACGCCTACTT
CAAGGGCATTGTCTTCGACGAGTGCCGGTTGGGGGAGTGCGCGCCTAGGA
ACGCGGGGAACATGACGCTGCAAGAGctgagg

Coding sequence (CDS) from alignment at CM002471.1:23523..24904+

>rna7213 ID=rna7213|Name=rna7213|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at CM002471.1:23523..24904+ (Nannochloropsis gaditana)
ATGACGGTAGTCCCTGATCCTTTGTTACAGAGACCACACGTCTGCTTCCT
AGCATCTACATGCAGGGTGCCTTATACGCGcgctcttttcctcgcctCAT
CGCCCCACGTCTTCCAGGTGTGCACAGATGACTCCGTGTGCGGTTCTGGG
CAGCTGTGTCGACATGCACTGCCGATGTACCAGCGGCTCGAAGGGGTCTG
CAACATCTTCACCAAGGGTTTCGcggattttttggggggagcTGGAACCC
TGGCGTTGCAAATGGGCATGACCGACAGCGAAGGAGGTATATGGGCAGGG
TGGAAGGTtcaggaaggggacgagaaaagggagaggcagcGTAGGGTCTG
A

Synonyms

Publications