rna7199, rna7199 (mRNA) Nannochloropsis gaditana

Overview
Namerna7199
Unique Namerna7199
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1776
Alignment locationCM002470.1:693238..695414 +

Link to JBrowse

Properties
Property NameValue
Producttranscription initiation factor iif subunit
Orig transcript idgnl|cribi|Naga_100198g6.5737.mrna
Orig protein idgnl|cribi|Naga_100198g6.5737
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:693238..695414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100198g6gene6962Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7199rna7199-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23495.1cds7182Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7199 ID=rna7199|Name=rna7199|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
ATGCTCCTCCTCCTCCCATTGGGCCTCCTTCCCTGTCCTTACGGATCCGG
CAGAGCCCTGGTCAGACGACTTTCAAGCCAACAGGGCCGCAATGGACGAG
CTGGTCGACCGCCTCGACGGCATCTTGGAAGAAGTAAGAGACGTCCGTGT
CTTCTAGTGTGTATATGCGAACATGATTCCTTGGGCTCAGGCCCCCACAC
ACCCGTTTTTCTCGGTCAGGTGTATCAAGGTGGAGGCGAGCTTGCTCGTT
CGAAGCACGAACAGCGTGGAAAGCTTTATGTGCGAGAGCGCATCGAACGG
CTCGTGGATCCTGGCACCCCTTTTCTGGAGCTGTCGCCATTGGCAGGAAG
GGAGCTCTACGACCAAGACAAAGTGCCCGCAGGAGGCATCGTGACGGGCA
TCGGTCGCGTGGCGGGCCTGGAGTGCATGCTGGTGGCGAACGACGCCACG
GTCAAAGGGGGCACCTATTACCCCATCACGGTCAAGAAGCACCTGAGGGC
CCAGGAAATCGCTTCCCAGAACAAGCTGCCGTGTATATATCTGGTCGATT
CAGGAGGCGCCTTCCTCCCCAGACAGGATGAGGTCTTCCCGGACCGGGAT
CACTTCGGGCGTATCTTCTTCAATCAAGCCAACATGTCCGCCGCAGGGAT
TCCGCAGATTGCGGTCGTAATGGGGTCCTGCACCGCGGGAGGCGCCTACG
TCCCCGCCATGTCGGACGAGAGCGTCATTGTCAAGGGAAGCGGTACCATT
TTCCTTGGAGGCCCTCCCCTCGTCAAGGCAGCGACAGGGGAGGTCGTCAG
CGCCGAGGATCTAGGCGGCGCGGACGTCCACTGTCGAACCTCAGGCGTGG
TCGATCACTATGCTACTGACGATCTCCATGCCCTCGAGATCACCAGATCC
ATCGTAGCCAGCTTGAATGTGCCCGAGGCGAGGACCGCTGCCTTCTCGCC
CAATGGGAAGACGGGAGGCCCATACGAAGAGCCCCTCTATTCTCCCGACG
AGCTGGGAGGGCTCGTCCCTCTGGACCCCAAGCGGCCCTTCGACGTCCGC
AGCGTCATCGCCCGGGTCGTGGACGGCTCCCGCTTCCAAGAATTTAAGGC
GTTCTACGGCCCCACCATCGTCACGGGCTTCGCGCGCATTCATGGCATCC
TGACAGGCATTGTGGCCAATAACGGGATTCTTTTTTCCGAGTCCGCCTTG
AAGGCCGCCCATTTCATCGAACTTTGCTCCCAGCGTCATATTCCTCTCGT
CTTCCTACAGAACATCACGGGCTTCATGGTGGGCAGGAAATACGAAAACG
AAGGCATCGCCAAGAACGGGGCCAAGCTCGTCACCGCTGTCTCCACGTCG
AAGGTTCCGAAGATTACCCTCCTGATCGCTGGCTCCTATGGGGCGGGCAA
CTACGGGATGTGCGGGCGCGCGTTCTCCCCTCGTTTCCTCTTCATGTGGC
CGAACGCCAAGATCAGTGTCATGGGCGGGGAGCAAGCAGCAAATGTTTTG
GCGACTGTGGCGGCGCAAGGGAAAGACTGGACGTCCGTGGAGGAATCCGC
TTTCAAAGCACCCATCTTAGCCAAATTTAGCAAAGAGTCTTCCTGCTACT
ACTCCTCGGCTCGTGCTGGGCTTGGGGCTGGCGGTGGCAGTGAAGGAGCA
GGCAGAAAGGACGCAATTTGGAGTCTTCAGGATGTAATCAAGCACCAGAG
AATTGTACGGAAAGTGTTGGATGCTAGCGAGAAGGTCTATAAATGTCCTA
TGCGAGTAAACCGGAGCTTGTACTGA
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protein sequence of rna7199

>rna7199-protein ID=rna7199-protein|Name=rna7199|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MPKMYALRAAAEGGGPEGGRMMVEGVVSRRTSLLPTASLDYRVFAKKRQI
QHHRKERRVELLRDDWGPGGEGGRGAGGAVRKMIDLNAPLSGAGVGRGTG
GRDGPQRVRLDQAGLRTALFKCFQLKSAWTARELVARLGQPEGSVKSALR
EISDYQTQGDYFGKYLLKTEFRGKDG
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mRNA from alignment at CM002470.1:693238..695414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7199 ID=rna7199|Name=rna7199|organism=Nannochloropsis gaditana|type=mRNA|length=2177bp|location=Sequence derived from alignment at CM002470.1:693238..695414+ (Nannochloropsis gaditana)
GTCACGGTTACTAGCGCTTGACGTGGCTTGCTTCCAGGCAGGTATTTCAT
CACATGCACCCTCAGCTATCTCTTCATTCCCCGATTTTCCTTCCGTCCAC
AGCTGCACGAACAGACACAAACAAATGGCAGATAGCTCTGGAAGTGGTAC
AGGACAACCTGCGGTCCCACCGTCGCGAAAGCGTCCCTCTGTCCGGTACG
TCAGAGCTCAGCATGAATGAGATGGTAACAACGATGTGTTCTGGTGATAA
CTCCGTCGTACTCTGTACTCATTCGCACAAAACTTTCTACATCTTTTGAC
ATACAATCATTTCTCGCACAATGCTGTATCTCATGTCCTTCCATATCTAG
CAAAGGTAAGCAAAGCCATTATCGTTTTacactcctcttcctttgttCTG
ATCTCGCTTCCTATGtcccatttttttctttctccctccccttttcacTC
ACACTATCACGTCCTACCATCGAATTCAACCTCTAggcaaggacaaggga
gagtCTGGCGGTGCTTCGATCGGAACCGCGACATCGGGCAAACGTCGCTT
GCTGGACACGACGCGCCAGGGGGTGCGCGTGTGGCTGGTGAAGGTCCCGG
TGGCGGTAGCGGAGGCCATTAAGAGCGCTCAAGAAGGCGAAAAGGTCGGC
ACTCTGACTGTGAGCCGAAGccatggcggtggaggggcaggagcagaCGA
TCTGGTAAGGAGGCGGGTGCGAAAGAGGTGATTGATGCGAAAGATGGAGA
GTGTATAGAAAGCGACGACAGGAAAGATTAAgatatggaggagggggaag
gcaggaagaagaaggcaggaggaattggagcAAACAATCATGTGGAGTAA
GAGAGAGGCACCGAGGGGGTGTCCGTCCAGCTCGATGAGCTAAAGTCGAC
CCGAAAAGGGTGGTGGCGCTAGAGCGATCTCCTGTCCAGGGTGCACGATT
TGGAGGAGTCCTTGCGTCTATACCCCTACTCACTTGAATAAACCGTCTTt
caccctcccccaccgctgTCTTGCTTTCTCTGCAGCGCACGGAAGCCGTA
CGCCTGGAGGAAAGCTTATGCGAGCGCCTGGAACTGCCCCGCGACTTTAC
CCTGGAAGCCCCCCCCGCAGAGACGAAGATGCCCAAGATGTACGCCCTGC
GCGCcgccgcggagggaggagggcctgaaGGGGGGCGcatgatggtggag
ggggtggtgagTCGGCGGACGAGCCTCTTGCCCACAGCTTCCTTGGACTA
CCGCGTCTTTGCCAAGAAGAGGCAAATCCAGCACCACCGGAAAGAGCGGC
GTGTGGAGCTTTTGCGGGATGACtggggcccaggaggcgagggagggcgg
ggggctggcggggcTGTGCGGAAGATGATCGATCTCAACGCGCCCCTGAG
CGGagcaggggtggggagggggacaggagggagagacgggccCCAGAGGG
TGCGGCTCGATCAGGCGGGCTTGCGGACGGCGCTTTTCAAATGCTTTCAA
TTGAAATCGGCCTGGACTGCGCGGGAGTTGGTGGCTCGACTGGGGCAGCC
CGAGGGGAGCGTCAAGAGTGCGCTGAGGGAGATCTCTGACTACCAGACTC
AGGGAGACTATTTCGGGAAATACTTGCTCAAAACAGAATtcaggggaaaa
gatggatGAAGTATGAAGTCGTTCAAATAGGTGCAGCACGTGAGACCGCT
CTCTGGGGAGTGCCAGTATGCCAAAATGACTATTAATGCGAAGCAGGTCT
GTCGGTGCACCGGTAGGAATAATAAGATgtattcctcttcctttttgatC
GATATGCTGCAATTCTCTATAGCATGCATTTTCCCTTCTAAAGCTTCAAT
TTCCATTTACCCTTCCCTCTGGCGTCTTCTGTTTTTTTTATTTTGGGGCG
AATGGTGGCTactcttttccttccgcaTACTGCAACTTTATATCATATCT
GCTGCATTCTACAACTTGTCCTTCTTGCTGGTGTACTCGCAGGGTGCGGC
AACTCTAACCTGTCACGTCGCCAATGTCGAGATGAGAGGTTTTATGTAAA
TAGTTGAACATGAAGAGGGACAGTACCACAAAAATGAAGTGTATAGGTGT
GACCATCTCGTTTCAAAGAAAACAGACGACAAGCTGCTGTGGTATGTAAG
GGAAACTTTTGCCGTCCTCGCCATTTG
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Coding sequence (CDS) from alignment at CM002470.1:693238..695414+

>rna7199 ID=rna7199|Name=rna7199|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002470.1:693238..695414+ (Nannochloropsis gaditana)
ATGCCCAAGATGTACGCCCTGCGCGCcgccgcggagggaggagggcctga
aGGGGGGCGcatgatggtggagggggtggtgagTCGGCGGACGAGCCTCT
TGCCCACAGCTTCCTTGGACTACCGCGTCTTTGCCAAGAAGAGGCAAATC
CAGCACCACCGGAAAGAGCGGCGTGTGGAGCTTTTGCGGGATGACtgggg
cccaggaggcgagggagggcggggggctggcggggcTGTGCGGAAGATGA
TCGATCTCAACGCGCCCCTGAGCGGagcaggggtggggagggggacagga
gggagagacgggccCCAGAGGGTGCGGCTCGATCAGGCGGGCTTGCGGAC
GGCGCTTTTCAAATGCTTTCAATTGAAATCGGCCTGGACTGCGCGGGAGT
TGGTGGCTCGACTGGGGCAGCCCGAGGGGAGCGTCAAGAGTGCGCTGAGG
GAGATCTCTGACTACCAGACTCAGGGAGACTATTTCGGGAAATACTTGCT
CAAAACAGAATtcaggggaaaagatggatGA
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Synonyms
Publications