EWM23545.1, cds7131 (CDS) Nannochloropsis gaditana

Overview
NameEWM23545.1
Unique Namecds7131
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:562571..562693 -
Alignment locationCM002470.1:562291..562380 -
Alignment locationCM002470.1:561965..562120 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23545.1
Productglycine-rich protein
Orig transcript idgnl|cribi|Naga_100339g1.6967.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:562571..562693 -
CM002470.1supercontigCM002470.1:562291..562380 -
CM002470.1supercontigCM002470.1:561965..562120 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR019844Cold-shock_CS
IPR012340NA-bd_OB-fold
IPR011129Cold_shock_prot
IPR002059CSP_DNA-bd
Homology
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|585104659|gb|EWM23545.1| (glycine-rich protein [Nannochloropsis gaditana])

HSP 1 Score: 248.825 bits (634), Expect = 1.342e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE 122
            MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE
Sbjct:    1 MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE 122          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|125560025|gb|EAZ05473.1| (hypothetical protein OsI_27689 [Oryza sativa Indica Group])

HSP 1 Score: 88.1965 bits (217), Expect = 2.278e-19
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++  G+R +N G+VVEF +  G+ GR +AV+VTAPGG AL
Sbjct:    7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGAL 77          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|1002290807|ref|XP_015649739.1| (PREDICTED: glycine-rich protein 2 [Oryza sativa Japonica Group] >gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group] >gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group] >gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group] >gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937928768|dbj|BAT03684.1| Os08g0129200 [Oryza sativa Japonica Group])

HSP 1 Score: 88.1965 bits (217), Expect = 2.308e-19
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++  G+R +N G+VVEF +  G+ GR +AV+VTAPGG AL
Sbjct:    7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGAL 77          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|474091493|gb|EMS54889.1| (Glycine-rich protein 2 [Triticum urartu])

HSP 1 Score: 85.8853 bits (211), Expect = 5.939e-19
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ F+  +G+GFI+PEDGSED+F+HQ+ I+  G+R +N  + VEF+++ GD GR +A +VTAPGG AL
Sbjct:    6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGDDGRTKASDVTAPGGGAL 76          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|125602074|gb|EAZ41399.1| (hypothetical protein OsJ_25920 [Oryza sativa Japonica Group])

HSP 1 Score: 87.8113 bits (216), Expect = 6.534e-19
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++  G+R +N G+VVEF +  G+ GR +AVNVTAPGG A+
Sbjct:    7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|527209617|gb|EPS74291.1| (hypothetical protein M569_00471, partial [Genlisea aurea])

HSP 1 Score: 85.8853 bits (211), Expect = 1.588e-18
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0
Query:   29 IHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            + +GTV+ F+S +G+GFITP+DGSED+F+HQT I+  GFR +  GE VEF +  GD GR +A NVT PGG ++
Sbjct:    3 VKRGTVKWFNSEKGFGFITPDDGSEDLFVHQTAIKSEGFRVLGEGEEVEFVVQHGDDGRPKAGNVTGPGGSSV 75          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|326523669|dbj|BAJ93005.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 86.6557 bits (213), Expect = 2.072e-18
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ F+  +G+GFI+PEDGSED+F+HQ+ I+  G+R +N  +VVEF ++ GD GR +A +VTAPGG AL
Sbjct:    6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDVTAPGGGAL 76          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|855308445|ref|XP_012896523.1| (Cold-shock protein DNA-binding [Blastocystis hominis] >gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis])

HSP 1 Score: 82.8037 bits (203), Expect = 3.196e-18
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0
Query:   14 AVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSE---DVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEAL 100
            +VT+    +++    ++ G  + F++++GYGFI P+ GS+   D+F+HQ+ I+  GFRF+  GE VEF +  G KG+ A NVTAPGG A 
Sbjct:    7 SVTSVVPRTAACLRYVYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFDVTDGQKGKVATNVTAPGGLAF 96          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|21322752|dbj|BAB78536.2| (cold shock protein-1 [Triticum aestivum])

HSP 1 Score: 85.5001 bits (210), Expect = 4.667e-18
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100
            +GTV+ F+  +G+GFI+PEDGSED+F+HQ+ I+  G+R +N  + VEF+++ GD GR +A +VTAPGG AL
Sbjct:    6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGDDGRTKASDVTAPGGGAL 76          
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|1098429066|gb|OII76968.1| (cold-shock DNA-binding domain-containing protein [Cryptosporidium andersoni])

HSP 1 Score: 82.4185 bits (202), Expect = 6.343e-18
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   30 HQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRR-AVNVTAPGGEAL 100
            H G  + FDS +G+GFITP+DGSED+F+HQ  I+  GFR +   E VE+++   DKGRR AVNV  P G A+
Sbjct:    3 HSGVCKWFDSAKGFGFITPDDGSEDIFVHQQNIKVEGFRSLGQAERVEYEVETDDKGRRKAVNVCGPNGAAV 74          
The following BLAST results are available for this feature:
BLAST of EWM23545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104659|gb|EWM23545.1|1.342e-83100.00glycine-rich protein [Nannochloropsis gaditana][more]
gi|125560025|gb|EAZ05473.1|2.278e-1954.93hypothetical protein OsI_27689 [Oryza sativa Indic... [more]
gi|1002290807|ref|XP_015649739.1|2.308e-1954.93PREDICTED: glycine-rich protein 2 [Oryza sativa Ja... [more]
gi|474091493|gb|EMS54889.1|5.939e-1953.52Glycine-rich protein 2 [Triticum urartu][more]
gi|125602074|gb|EAZ41399.1|6.534e-1954.93hypothetical protein OsJ_25920 [Oryza sativa Japon... [more]
gi|527209617|gb|EPS74291.1|1.588e-1854.79hypothetical protein M569_00471, partial [Genlisea... [more]
gi|326523669|dbj|BAJ93005.1|2.072e-1854.93predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|855308445|ref|XP_012896523.1|3.196e-1842.22Cold-shock protein DNA-binding [Blastocystis homin... [more]
gi|21322752|dbj|BAB78536.2|4.667e-1853.52cold shock protein-1 [Triticum aestivum][more]
gi|1098429066|gb|OII76968.1|6.343e-1852.78cold-shock DNA-binding domain-containing protein [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7148rna7148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications