EWM23545.1, cds7131 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|585104659|gb|EWM23545.1| (glycine-rich protein [Nannochloropsis gaditana]) HSP 1 Score: 248.825 bits (634), Expect = 1.342e-83 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 Query: 1 MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE 122 MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE Sbjct: 1 MLSRLALTMRSSLAVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEALPPRNNADRPMGSRGGDYSGPRE 122
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|125560025|gb|EAZ05473.1| (hypothetical protein OsI_27689 [Oryza sativa Indica Group]) HSP 1 Score: 88.1965 bits (217), Expect = 2.278e-19 Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++ G+R +N G+VVEF + G+ GR +AV+VTAPGG AL Sbjct: 7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGAL 77
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|1002290807|ref|XP_015649739.1| (PREDICTED: glycine-rich protein 2 [Oryza sativa Japonica Group] >gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group] >gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group] >gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group] >gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937928768|dbj|BAT03684.1| Os08g0129200 [Oryza sativa Japonica Group]) HSP 1 Score: 88.1965 bits (217), Expect = 2.308e-19 Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++ G+R +N G+VVEF + G+ GR +AV+VTAPGG AL Sbjct: 7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGAL 77
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|474091493|gb|EMS54889.1| (Glycine-rich protein 2 [Triticum urartu]) HSP 1 Score: 85.8853 bits (211), Expect = 5.939e-19 Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ F+ +G+GFI+PEDGSED+F+HQ+ I+ G+R +N + VEF+++ GD GR +A +VTAPGG AL Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGDDGRTKASDVTAPGGGAL 76
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|125602074|gb|EAZ41399.1| (hypothetical protein OsJ_25920 [Oryza sativa Japonica Group]) HSP 1 Score: 87.8113 bits (216), Expect = 6.534e-19 Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ FD+ +G+GFITP+DG ED+F+HQ+ ++ G+R +N G+VVEF + G+ GR +AVNVTAPGG A+ Sbjct: 7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|527209617|gb|EPS74291.1| (hypothetical protein M569_00471, partial [Genlisea aurea]) HSP 1 Score: 85.8853 bits (211), Expect = 1.588e-18 Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0 Query: 29 IHQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 + +GTV+ F+S +G+GFITP+DGSED+F+HQT I+ GFR + GE VEF + GD GR +A NVT PGG ++ Sbjct: 3 VKRGTVKWFNSEKGFGFITPDDGSEDLFVHQTAIKSEGFRVLGEGEEVEFVVQHGDDGRPKAGNVTGPGGSSV 75
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|326523669|dbj|BAJ93005.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 86.6557 bits (213), Expect = 2.072e-18 Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ F+ +G+GFI+PEDGSED+F+HQ+ I+ G+R +N +VVEF ++ GD GR +A +VTAPGG AL Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDVTAPGGGAL 76
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|855308445|ref|XP_012896523.1| (Cold-shock protein DNA-binding [Blastocystis hominis] >gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis]) HSP 1 Score: 82.8037 bits (203), Expect = 3.196e-18 Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0 Query: 14 AVTARACSSSSTTPTIHQGTVRAFDSRRGYGFITPEDGSE---DVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRRAVNVTAPGGEAL 100 +VT+ +++ ++ G + F++++GYGFI P+ GS+ D+F+HQ+ I+ GFRF+ GE VEF + G KG+ A NVTAPGG A Sbjct: 7 SVTSVVPRTAACLRYVYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFDVTDGQKGKVATNVTAPGGLAF 96
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|21322752|dbj|BAB78536.2| (cold shock protein-1 [Triticum aestivum]) HSP 1 Score: 85.5001 bits (210), Expect = 4.667e-18 Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 0 Query: 31 QGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGR-RAVNVTAPGGEAL 100 +GTV+ F+ +G+GFI+PEDGSED+F+HQ+ I+ G+R +N + VEF+++ GD GR +A +VTAPGG AL Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGDDGRTKASDVTAPGGGAL 76
BLAST of EWM23545.1 vs. NCBI_GenBank
Match: gi|1098429066|gb|OII76968.1| (cold-shock DNA-binding domain-containing protein [Cryptosporidium andersoni]) HSP 1 Score: 82.4185 bits (202), Expect = 6.343e-18 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0 Query: 30 HQGTVRAFDSRRGYGFITPEDGSEDVFLHQTQIRRVGFRFVNTGEVVEFQMVQGDKGRR-AVNVTAPGGEAL 100 H G + FDS +G+GFITP+DGSED+F+HQ I+ GFR + E VE+++ DKGRR AVNV P G A+ Sbjct: 3 HSGVCKWFDSAKGFGFITPDDGSEDIFVHQQNIKVEGFRSLGQAERVEYEVETDDKGRRKAVNVCGPNGAAV 74 The following BLAST results are available for this feature:
BLAST of EWM23545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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