EWM23559.1, cds7114 (CDS) Nannochloropsis gaditana

Overview
NameEWM23559.1
Unique Namecds7114
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:522155..522247 +
Alignment locationCM002470.1:522371..522555 +
Alignment locationCM002470.1:522821..523025 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23559.1
Productputative wd repeat-containing
Orig transcript idgnl|cribi|Naga_101114g1.10205.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:522155..522247 +
CM002470.1supercontigCM002470.1:522371..522555 +
CM002470.1supercontigCM002470.1:522821..523025 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|585104681|gb|EWM23559.1| (putative wd repeat-containing [Nannochloropsis gaditana])

HSP 1 Score: 328.176 bits (840), Expect = 9.331e-114
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160
            MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF
Sbjct:    1 MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|971505838|dbj|GAQ92367.1| (hypothetical protein KFL_009950020 [Klebsormidium nitens])

HSP 1 Score: 78.5666 bits (192), Expect = 4.326e-14
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 0
Query:    6 LTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVK 156
            L     L I +AH   ++ V+WHP+  HLL+SA  D+ + L D+R              PL ++ GH+   + +  +I  P F   GRY+   GE S+ +S+Y+  S K +SRG L  D    ATM   G   +     LWVA+ QG LV+
Sbjct:  372 LADPGSLCIENAHNSAINVVQWHPTNEHLLMSASHDRGICLHDIRATQQ----------PLFTFVGHLGPTLARSKSIYRPSFLGAGRYLASPGEGSQAISLYDVASGKTVSRGCLGFD----ATMTMAGKMGRD----LWVAA-QGGLVR 503          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|298715560|emb|CBJ28113.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 5.230e-11
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = 0
Query:    1 MRAASLTSSSCLVIPH----AHA-RTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGR----YVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMA 129
            +R + L SSS + +       H  R  HTVRWHP + + LLSAGLD  + L+DLR+             PL  + GH    + +  AI  PEF   G      ++  GE+S  +S+Y+  S   +SRG L  + S +A
Sbjct:  713 VRVSDLRSSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRL----------AAPLHVFRGHCPYALARPKAIHRPEFLPSGGGNSVNIITCGERSENISMYDAGSGGTVSRGLLGDEASALA 840          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1173150395|ref|XP_020532242.1| (uncharacterized protein LOC110008556 [Amborella trichopoda] >gi|548834134|gb|ERM96571.1| hypothetical protein AMTR_s00001p00269830 [Amborella trichopoda])

HSP 1 Score: 65.0846 bits (157), Expect = 2.063e-9
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
            L I   H+  V+  +W PS   +LLSA  D +L L+D+R              PL    GHVS+ ++    I  P F D G+ V   G+ SR +S+Y   + K ISRG +  D + M  +E    +T  ++  L+VA RQ
Sbjct:  415 LFIDSDHSTGVNMAKWCPSNESILLSASKDPYLLLYDIRAPSQ----------PLHKLEGHVSANIRTCYRIYKPVFIDNGKAVATPGQGSRNISLYNVDTGKAISRGVIGYDANIMKYIEG---DTGPQQ--LFVAGRQ 539          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|551552408|ref|XP_005763588.1| (hypothetical protein EMIHUDRAFT_215011 [Emiliania huxleyi CCMP1516] >gi|485612993|gb|EOD11159.1| hypothetical protein EMIHUDRAFT_215011 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 60.8474 bits (146), Expect = 3.140e-8
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   34 LLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATM 131
            LLLSAG D  ++LWD R A  R         PL +  GHV+  V +Q  I  P+F   GRYV+ +GE S  LS+Y   S   +SRG++    S ++ +
Sbjct:  151 LLLSAGYDLQIKLWDAR-APSR---------PLHTLQGHVAPRVARQKGIFQPQFCAGGRYVVASGEGSEALSLYSAESGATLSRGRIGCTASTLSCV 238          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|551572321|ref|XP_005772007.1| (hypothetical protein EMIHUDRAFT_209194 [Emiliania huxleyi CCMP1516] >gi|485623365|gb|EOD19578.1| hypothetical protein EMIHUDRAFT_209194 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 61.2326 bits (147), Expect = 4.581e-8
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   34 LLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATM 131
            LLLSAG D  ++LWD R A  R         PL +  GHV+  V +Q  I  P+F   GRYV+ +GE S  LS+Y   S   +SRG++    S ++ +
Sbjct:  291 LLLSAGYDLQIKLWDAR-APSR---------PLHTLQGHVAPRVARQKGIFQPQFCAGGRYVVASGEGSEALSLYSAESGATLSRGRIGCTASTLSCV 378          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1130658763|ref|XP_019705581.1| (PREDICTED: uncharacterized protein LOC105043567 [Elaeis guineensis])

HSP 1 Score: 59.3066 bits (142), Expect = 2.005e-7
Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 0
Query:   12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
            L I   H+  ++TV W  +   LLLSA  D  L L+D+R + G          P+    GHV S  +    I  P F + G+ +   G+ SR++S+Y+  S   IS+G +  D + +   +  G E     P LW A RQ
Sbjct:  363 LTIKSEHSTGINTVEWC-TRKSLLLSASKDPTLHLYDVRNSAG----------PVLKLEGHVESTTRSCYQIYRPCFVEGGKTIATPGQGSRKISLYDVDSGTMISQGMIGYDANLVVFTD--GEE----HPRLWSAGRQ 485          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|672135947|ref|XP_008791652.1| (PREDICTED: peroxisomal targeting signal 2 receptor-like [Phoenix dactylifera])

HSP 1 Score: 58.5362 bits (140), Expect = 2.867e-7
Identity = 44/149 (29.53%), Postives = 69/149 (46.31%), Query Frame = 0
Query:   12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160
            L I   H+  V+TV W  +   LLLSA  D  L L+D+R + G          P+    GHV S ++    I  P F + G+ +   G+ SR++S+Y+      IS+G +  D + +   +        + P LW A RQ  + +L P 
Sbjct:  141 LTIKSEHSTGVNTVEWC-TRKSLLLSASKDPTLHLYDVRHSAG----------PVLKLEGHVESNIRSCYQIYRPCFVEGGKTIATPGQGSRKISLYDVDGGTMISQGMIGYDANLVVFTDCE------EHPRLWSAGRQ--INELCPL 270          
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1179524509|ref|XP_020683338.1| (uncharacterized protein LOC110100249 [Dendrobium catenatum])

HSP 1 Score: 58.5362 bits (140), Expect = 3.781e-7
Identity = 41/148 (27.70%), Postives = 63/148 (42.57%), Query Frame = 0
Query:    4 ASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
            A L     ++I   H+ +++TV W      LLL+A  D  L L+D+R              PLC   GHV +       I  P F D G  V   G+ + ++S+Y    AK +S+G +  D + +   E    +       +W A RQ
Sbjct:  341 ARLKKPCTIIINSQHSTSLNTVEWCRMNNFLLLTASRDPTLLLYDIRSYAD----------PLCKLAGHVDTNSGICQRIYKPSFIDGGTKVATVGQGTGKISLYSVEKAKLLSQGMIGYDANLVKPFEYGTADY-----IIWTAGRQ 473          
The following BLAST results are available for this feature:
BLAST of EWM23559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585104681|gb|EWM23559.1|9.331e-114100.00putative wd repeat-containing [Nannochloropsis gad... [more]
gi|971505838|dbj|GAQ92367.1|4.326e-1434.44hypothetical protein KFL_009950020 [Klebsormidium ... [more]
gi|298715560|emb|CBJ28113.1|5.230e-1134.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173150395|ref|XP_020532242.1|2.063e-933.57uncharacterized protein LOC110008556 [Amborella tr... [more]
gi|551552408|ref|XP_005763588.1|3.140e-838.78hypothetical protein EMIHUDRAFT_215011 [Emiliania ... [more]
gi|551572321|ref|XP_005772007.1|4.581e-838.78hypothetical protein EMIHUDRAFT_209194 [Emiliania ... [more]
gi|1130658763|ref|XP_019705581.1|2.005e-731.43PREDICTED: uncharacterized protein LOC105043567 [E... [more]
gi|672135947|ref|XP_008791652.1|2.867e-729.53PREDICTED: peroxisomal targeting signal 2 receptor... [more]
gi|1179524509|ref|XP_020683338.1|3.781e-727.70uncharacterized protein LOC110100249 [Dendrobium c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7131rna7131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications