EWM23559.1, cds7114 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|585104681|gb|EWM23559.1| (putative wd repeat-containing [Nannochloropsis gaditana]) HSP 1 Score: 328.176 bits (840), Expect = 9.331e-114 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160
MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF
Sbjct: 1 MRAASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|971505838|dbj|GAQ92367.1| (hypothetical protein KFL_009950020 [Klebsormidium nitens]) HSP 1 Score: 78.5666 bits (192), Expect = 4.326e-14 Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 0
Query: 6 LTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVK 156
L L I +AH ++ V+WHP+ HLL+SA D+ + L D+R PL ++ GH+ + + +I P F GRY+ GE S+ +S+Y+ S K +SRG L D ATM G + LWVA+ QG LV+
Sbjct: 372 LADPGSLCIENAHNSAINVVQWHPTNEHLLMSASHDRGICLHDIRATQQ----------PLFTFVGHLGPTLARSKSIYRPSFLGAGRYLASPGEGSQAISLYDVASGKTVSRGCLGFD----ATMTMAGKMGRD----LWVAA-QGGLVR 503
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|298715560|emb|CBJ28113.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.0922 bits (170), Expect = 5.230e-11 Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = 0
Query: 1 MRAASLTSSSCLVIPH----AHA-RTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGR----YVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMA 129
+R + L SSS + + H R HTVRWHP + + LLSAGLD + L+DLR+ PL + GH + + AI PEF G ++ GE+S +S+Y+ S +SRG L + S +A
Sbjct: 713 VRVSDLRSSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRL----------AAPLHVFRGHCPYALARPKAIHRPEFLPSGGGNSVNIITCGERSENISMYDAGSGGTVSRGLLGDEASALA 840
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1173150395|ref|XP_020532242.1| (uncharacterized protein LOC110008556 [Amborella trichopoda] >gi|548834134|gb|ERM96571.1| hypothetical protein AMTR_s00001p00269830 [Amborella trichopoda]) HSP 1 Score: 65.0846 bits (157), Expect = 2.063e-9 Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 0
Query: 12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
L I H+ V+ +W PS +LLSA D +L L+D+R PL GHVS+ ++ I P F D G+ V G+ SR +S+Y + K ISRG + D + M +E +T ++ L+VA RQ
Sbjct: 415 LFIDSDHSTGVNMAKWCPSNESILLSASKDPYLLLYDIRAPSQ----------PLHKLEGHVSANIRTCYRIYKPVFIDNGKAVATPGQGSRNISLYNVDTGKAISRGVIGYDANIMKYIEG---DTGPQQ--LFVAGRQ 539
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|551552408|ref|XP_005763588.1| (hypothetical protein EMIHUDRAFT_215011 [Emiliania huxleyi CCMP1516] >gi|485612993|gb|EOD11159.1| hypothetical protein EMIHUDRAFT_215011 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 60.8474 bits (146), Expect = 3.140e-8 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 34 LLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATM 131
LLLSAG D ++LWD R A R PL + GHV+ V +Q I P+F GRYV+ +GE S LS+Y S +SRG++ S ++ +
Sbjct: 151 LLLSAGYDLQIKLWDAR-APSR---------PLHTLQGHVAPRVARQKGIFQPQFCAGGRYVVASGEGSEALSLYSAESGATLSRGRIGCTASTLSCV 238
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|551572321|ref|XP_005772007.1| (hypothetical protein EMIHUDRAFT_209194 [Emiliania huxleyi CCMP1516] >gi|485623365|gb|EOD19578.1| hypothetical protein EMIHUDRAFT_209194 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 61.2326 bits (147), Expect = 4.581e-8 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 34 LLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATM 131
LLLSAG D ++LWD R A R PL + GHV+ V +Q I P+F GRYV+ +GE S LS+Y S +SRG++ S ++ +
Sbjct: 291 LLLSAGYDLQIKLWDAR-APSR---------PLHTLQGHVAPRVARQKGIFQPQFCAGGRYVVASGEGSEALSLYSAESGATLSRGRIGCTASTLSCV 378
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1130658763|ref|XP_019705581.1| (PREDICTED: uncharacterized protein LOC105043567 [Elaeis guineensis]) HSP 1 Score: 59.3066 bits (142), Expect = 2.005e-7 Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 0
Query: 12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
L I H+ ++TV W + LLLSA D L L+D+R + G P+ GHV S + I P F + G+ + G+ SR++S+Y+ S IS+G + D + + + G E P LW A RQ
Sbjct: 363 LTIKSEHSTGINTVEWC-TRKSLLLSASKDPTLHLYDVRNSAG----------PVLKLEGHVESTTRSCYQIYRPCFVEGGKTIATPGQGSRKISLYDVDSGTMISQGMIGYDANLVVFTD--GEE----HPRLWSAGRQ 485
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|672135947|ref|XP_008791652.1| (PREDICTED: peroxisomal targeting signal 2 receptor-like [Phoenix dactylifera]) HSP 1 Score: 58.5362 bits (140), Expect = 2.867e-7 Identity = 44/149 (29.53%), Postives = 69/149 (46.31%), Query Frame = 0
Query: 12 LVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQGTLVKLSPF 160
L I H+ V+TV W + LLLSA D L L+D+R + G P+ GHV S ++ I P F + G+ + G+ SR++S+Y+ IS+G + D + + + + P LW A RQ + +L P
Sbjct: 141 LTIKSEHSTGVNTVEWC-TRKSLLLSASKDPTLHLYDVRHSAG----------PVLKLEGHVESNIRSCYQIYRPCFVEGGKTIATPGQGSRKISLYDVDGGTMISQGMIGYDANLVVFTDCE------EHPRLWSAGRQ--INELCPL 270
BLAST of EWM23559.1 vs. NCBI_GenBank
Match: gi|1179524509|ref|XP_020683338.1| (uncharacterized protein LOC110100249 [Dendrobium catenatum]) HSP 1 Score: 58.5362 bits (140), Expect = 3.781e-7 Identity = 41/148 (27.70%), Postives = 63/148 (42.57%), Query Frame = 0
Query: 4 ASLTSSSCLVIPHAHARTVHTVRWHPSEPHLLLSAGLDQHLRLWDLRKAGGREGGREGGGGPLCSYFGHVSSLVQKQSAITAPEFYDQGRYVLITGEKSRRLSVYETLSAKPISRGQLDADVSQMATMESPGMETKGKRPCLWVASRQ 151
A L ++I H+ +++TV W LLL+A D L L+D+R PLC GHV + I P F D G V G+ + ++S+Y AK +S+G + D + + E + +W A RQ
Sbjct: 341 ARLKKPCTIIINSQHSTSLNTVEWCRMNNFLLLTASRDPTLLLYDIRSYAD----------PLCKLAGHVDTNSGICQRIYKPSFIDGGTKVATVGQGTGKISLYSVEKAKLLSQGMIGYDANLVKPFEYGTADY-----IIWTAGRQ 473 The following BLAST results are available for this feature:
BLAST of EWM23559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|