EWM23574.1, cds7099 (CDS) Nannochloropsis gaditana

Overview
NameEWM23574.1
Unique Namecds7099
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:487293..487518 -
Alignment locationCM002470.1:487017..487078 -
Alignment locationCM002470.1:486962..486970 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23574.1
Productgalactokinase
Orig transcript idgnl|cribi|Naga_101506g1.8307.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:487293..487518 -
CM002470.1supercontigCM002470.1:487017..487078 -
CM002470.1supercontigCM002470.1:486962..486970 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030246carbohydrate binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR019741Galactokinase_CS
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR019539GalKase_gal-bd
Homology
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|585104707|gb|EWM23574.1| (galactokinase [Nannochloropsis gaditana])

HSP 1 Score: 201.83 bits (512), Expect = 9.376e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MAHLRPASSVPASRRPLTECFVSCTVHRSLLYLQDSIMVVPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRTFRP 98
            MAHLRPASSVPASRRPLTECFVSCTVHRSLLYLQDSIMVVPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRTFRP
Sbjct:    1 MAHLRPASSVPASRRPLTECFVSCTVHRSLLYLQDSIMVVPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRTFRP 98          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|170062072|ref|XP_001866511.1| (galactokinase [Culex quinquefasciatus] >gi|167880121|gb|EDS43504.1| galactokinase [Culex quinquefasciatus])

HSP 1 Score: 77.0258 bits (188), Expect = 3.180e-16
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0
Query:   40 VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            V S D  ++ +I+ FR+ +G DPDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:   19 VISFDEVVKTSIETFRDTFGCDPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 74          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|1097569834|emb|SFC34545.1| (galactokinase [Nocardioides terrae])

HSP 1 Score: 80.4925 bits (197), Expect = 9.120e-16
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   38 MVVPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRTF 96
            M +P+   + +HA+D FR+ +G +PD    APGRVNLIGEHTDYNDGFV P+A++ RT+
Sbjct:    1 MTLPTSHASAEHAVDGFRQTFGREPDGVWSAPGRVNLIGEHTDYNDGFVLPVAIEQRTW 59          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|568253928|gb|ETN62970.1| (galactokinase [Anopheles darlingi])

HSP 1 Score: 76.6406 bits (187), Expect = 1.975e-15
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0
Query:   40 VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            V S D  ++ +I+ FR  +G++PD+AA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:   77 VISFDEVVKTSIETFRNTFGTEPDVAACAPGRVNLIGEHVDYNDGFVLPMALQMAT 132          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|1121120697|ref|XP_019549121.1| (PREDICTED: galactokinase-like isoform X1 [Aedes albopictus] >gi|1121120700|ref|XP_019549122.1| PREDICTED: galactokinase-like isoform X1 [Aedes albopictus] >gi|1121120705|ref|XP_019549124.1| PREDICTED: galactokinase-like isoform X1 [Aedes albopictus])

HSP 1 Score: 78.5666 bits (192), Expect = 4.384e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:   35 DSIMV--VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            D+ MV  V S D  ++ +I+ FR  +GS+PDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:   10 DTKMVSKVISFDEVVKTSIETFRNTFGSEPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 72          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|1121093408|ref|XP_019537340.1| (PREDICTED: galactokinase isoform X1 [Aedes albopictus])

HSP 1 Score: 78.5666 bits (192), Expect = 4.384e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:   35 DSIMV--VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            D+ MV  V S D  ++ +I+ FR  +GS+PDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:   10 DTKMVSKVISFDEVVKTSIETFRNTFGSEPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 72          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|1121093412|ref|XP_019537342.1| (PREDICTED: galactokinase isoform X3 [Aedes albopictus] >gi|1121093414|ref|XP_019537343.1| PREDICTED: galactokinase isoform X3 [Aedes albopictus])

HSP 1 Score: 78.5666 bits (192), Expect = 4.398e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:   35 DSIMV--VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            D+ MV  V S D  ++ +I+ FR  +GS+PDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:   10 DTKMVSKVISFDEVVKTSIETFRNTFGSEPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 72          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|665797937|ref|XP_008546820.1| (PREDICTED: galactokinase-like [Microplitis demolitor])

HSP 1 Score: 78.5666 bits (192), Expect = 5.021e-15
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   39 VVPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            V+P+ D     A+++F + +G+DPDI  +APGRVNLIGEHTDYN+GFV P+AL + T
Sbjct:    4 VIPTIDKVKAEAMEIFHKEFGNDPDICVFAPGRVNLIGEHTDYNEGFVLPMALPMVT 60          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|157132055|ref|XP_001662440.1| (AAEL002781-PA [Aedes aegypti] >gi|108881725|gb|EAT45950.1| AAEL002781-PA [Aedes aegypti])

HSP 1 Score: 77.7962 bits (190), Expect = 5.477e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0
Query:   40 VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            V S D  ++ +I+ FR  +GS+PDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:    5 VISFDEVVKTSIETFRNTFGSEPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 60          
BLAST of EWM23574.1 vs. NCBI_GenBank
Match: gi|157132053|ref|XP_001662439.1| (AAEL002781-PB [Aedes aegypti] >gi|108881724|gb|EAT45949.1| AAEL002781-PB [Aedes aegypti])

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0
Query:   40 VPSEDITLQHAIDLFREAYGSDPDIAAYAPGRVNLIGEHTDYNDGFVFPLALDLRT 95
            V S D  ++ +I+ FR  +GS+PDIAA APGRVNLIGEH DYNDGFV P+AL + T
Sbjct:    5 VISFDEVVKTSIETFRNTFGSEPDIAACAPGRVNLIGEHVDYNDGFVLPMALPMVT 60          
The following BLAST results are available for this feature:
BLAST of EWM23574.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104707|gb|EWM23574.1|9.376e-66100.00galactokinase [Nannochloropsis gaditana][more]
gi|170062072|ref|XP_001866511.1|3.180e-1662.50galactokinase [Culex quinquefasciatus] >gi|1678801... [more]
gi|1097569834|emb|SFC34545.1|9.120e-1655.93galactokinase [Nocardioides terrae][more]
gi|568253928|gb|ETN62970.1|1.975e-1558.93galactokinase [Anopheles darlingi][more]
gi|1121120697|ref|XP_019549121.1|4.384e-1560.32PREDICTED: galactokinase-like isoform X1 [Aedes al... [more]
gi|1121093408|ref|XP_019537340.1|4.384e-1560.32PREDICTED: galactokinase isoform X1 [Aedes albopic... [more]
gi|1121093412|ref|XP_019537342.1|4.398e-1560.32PREDICTED: galactokinase isoform X3 [Aedes albopic... [more]
gi|665797937|ref|XP_008546820.1|5.021e-1556.14PREDICTED: galactokinase-like [Microplitis demolit... [more]
gi|157132055|ref|XP_001662440.1|5.477e-1562.50AAEL002781-PA [Aedes aegypti] >gi|108881725|gb|EAT... [more]
gi|157132053|ref|XP_001662439.1|7.695e-1562.50AAEL002781-PB [Aedes aegypti] >gi|108881724|gb|EAT... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7116rna7116Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications