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Properties
| Property Name | Value |
|---|
| Product | dna mismatch repair protein msh3 |
| Orig transcript id | gnl|cribi|Naga_100139g17.4738.mrna |
| Orig protein id | gnl|cribi|Naga_100139g17.4738 |
| Gene | MSH3 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:453338..454844 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7104 ID=rna7104|Name=rna7104|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp
CCTTGGCTTGGTGATGATGTGGCAGTCGGATGACGACCGCCTATCGGGTT
TTGACCCTGTTCAAACCCGGTGCAGGTCAACAGGAAAAGGAGGGATTTTC
CATTCCTGCCAGCGTGGGCACAATGTTCGAAGTTGGTGTTAATGTCGAGA
ATTTCCACATGATACTTGAACGTTTTTCTTGTCACTGACACAGGCGTCGC
ATTTGAGACACGAACCATGACTCCGCCACCTACTTCAGTGCTCCTGCTCG
TCCTCATCGCCCTCGGTGCTGCCACGGCTTTTGTTCCCAGTATGCCTCGC
TCAATCACTGTCGCCCCTCATTCGTCGCATGTGACATCAAGCCCAACCCG
GTTGCATTTGTGGGGAGGGGGCAAGAAAAAGGATGCGGGAAGTAATCCCA
CAGCTGGCAAAAATAAAGGTACGCAAACTGGGGCAGGACAGAAGAAGAGA
GCTACTCCCATGAAATACGGACAAAATACGCTGGTAGACAAGGATGAGGA
TGTCATCGTTCCTGCTACGGAATATTTCGCCAATAAAAAAGACGTCATCG
TCCCAATCTTGTTTGCGGGTCTGTTCGTTCCTATATTTGGCTTGCTCGGG
TGGTGGCTGTACGGACCACAGCCAGAGCCCCAGATTGCCTCACCCGACGA
GAAGACTTCATACGACGTGTACTTCAAGGATTCAAACAAAATCAAATCTC
GAAAGTTTTAAGCACGGTGTGCGATTCGTAAGGTTGAAGATGATTGGCAC
ATGCTTTCGAATACGAATGGATAAGGACTTAAAGAAGCAGAGACTCTCTG
AGTCTGGGAGAAATGGGGACCGACACAGATATGCGTACTTACTGTGATAG
TGTACAGATGTTTTTGGAAGTACACGTGCGAGAGGTCTTCTGGCGCAGGG
ATTAAAAAAATAACGAAAAAGTTTTTTTGCTCTCCTCCCGCACAATTTTA
GCGGTGCTGTGCTCAAAATTCAAGATGATTAGTTGTTTCAGCGAAGGAAA
TTGCAGTATGACAACCTTCATTTATCATGCGTTAACCTTGGAGAGAACCA
AGATGTCTCATGGGCCTCATC back to topprotein sequence of rna7104 >rna7104-protein ID=rna7104-protein|Name=rna7104|organism=Nannochloropsis gaditana|type=polypeptide|length=406bp
MSSQTSISRYFRSKAPSASNPTPTSPFTSSSTSNTTPCLHSPHLPPKKRP
PSGPPSSSSSSSSSSSSSSSSSSSCSPPSGHAINRSLTQAPPSKRLRLTR
LRPRASAKVGTFRKAEEEEEEEQEVEEGEGPENGEEDGEEVIIVEDYQGK
RDGSGPKTSEKLVSSVGQDPGAPRPPPPPAPPTHAKMRKVAPSHQRQARF
IRKLAKASQEEAEEEDGEGGRREKGEKTGGPPRGTLAALLPETEGGSARA
RAGKGRAAASASKGKAGAGSTRLTPLEQQVVALKRAHPDTLLLVECGYRV
RFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGV
VRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNEDDPALVFANTG
VGVRGG back to topmRNA from alignment at CM002470.1:453338..454844+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7104 ID=rna7104|Name=rna7104|organism=Nannochloropsis gaditana|type=mRNA|length=1507bp|location=Sequence derived from alignment at CM002470.1:453338..454844+ (Nannochloropsis gaditana)
CTCGATCTATCATAGAACAGGAAAGCAAGTGAGCGAAAGGAGAGCACCTT
CACAACCTCCGTTTCTTTGAACCAATTGACTCTCCGAAGGACTactctcc
tccatcgtgaGCTCCTCTACCATGTCCTCTCAGACGTCAATAAGCCGATA
TTTTCGCAGCAAAGCACCCTCTGCTTCCAATCCTACCCCTACCTCaccct
tcacctcctccagcacctctaACACCACTCCTTGCTTGCAttcccctcac
cttcctcccaagAAGAGACCGCCAtcgggccctccttcctcctcctcctc
ctcctcctcctcctcctcctcctcctcctcctcctcctcctcctgcagtC
CGCCCTCCGGCCATGCAATTAATAGGAGTCTGACGCAAGCACCTCCCTCT
AAACGGCTACGGCTGACgcgccttcgccctcgtgCCTCCGCGAAGGTGGG
AACCTTTCgaaaagcggaggaagaagaggaagaagagcaggaagtggagg
aaggggagggtcctgaaaacggggaggaggacggggaggaggtgataaTT
GTGGAAGACTATCAGGGGAAACGAGACGGCAGTGGGCCCAAGACGTCCGA
AAAGCTCGTGTCTTCCGTCGGACAAGATCCTGGTGccccgcggccgcctc
ctcctcccgcgcctcccacccacgccaAGATGAGGAAGGTCGCCCCATCC
CACCAACGACAGGCACGCTTCATCCGCAAGCTCGCCAAGGCCAgccaaga
ggaggcggaggaggaggacggggagggagggcgccgggagaagggggaga
agacgggcggCCCTCCCCGGGGCACCCTGGCGGCTTTGCTGCcagagaca
gagggaggcagtgccAGGGCCCGtgcaggaaaagggagagcggCGGCATC
CGCCTCcaaagggaaggcaggggcagggagcaCGCGGCTGACGCCCTTGG
AGCAGCAGGTGGTGGCCTTGAAGAGGGCTCACCCGGACACGTTGCTGCTG
GTCGAGTGCGGTTATCGGGTCCGGTTTTTCGGGGAAGACGCCCTGCACGC
CAGCCAGGTCCTGGGGATCTACACCTACATCGACCACGCCTTCTACGTGG
CCTCCATTCCCACCCTCCGGATCAAGGTCGGCGTGtgttcttccttctct
ttcttttgaTTCCCCAATGGAAAACGGAGGATGTTGGACAGGGCAATCGG
CCCGTCGCATGCTCCACGAAGGATTCCTCTCGTTGTAATTCTTTATTTAG
AAAAATCAATCAATCCGTTCTTTCTTCTACGGTCACGCCCGCAGGTACAT
TTGAAACGGCTGGTGGAAGCGGGATTCAAGGTGGGAGTGGTGCGACAGAC
GGAAACAGCGGCTCTTAAGGCCGCAGGGCTGTCGGCATCGGGGGCCAAGA
GTGGCACATTTCAACGCGAACTGGCAGGCGTCTTCACGCGTTGTACCTAC
AACGAGGATGACCCCGCCTTGGTCTTTGCGAACACGGGCGTGGGGGTGCG
GGGGGGG back to topCoding sequence (CDS) from alignment at CM002470.1:453338..454844+ >rna7104 ID=rna7104|Name=rna7104|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at CM002470.1:453338..454844+ (Nannochloropsis gaditana)
ATGTCCTCTCAGACGTCAATAAGCCGATATTTTCGCAGCAAAGCACCCTC
TGCTTCCAATCCTACCCCTACCTCacccttcacctcctccagcacctcta
ACACCACTCCTTGCTTGCAttcccctcaccttcctcccaagAAGAGACCG
CCAtcgggccctccttcctcctcctcctcctcctcctcctcctcctcctc
ctcctcctcctcctcctcctcctgcagtCCGCCCTCCGGCCATGCAATTA
ATAGGAGTCTGACGCAAGCACCTCCCTCTAAACGGCTACGGCTGACgcgc
cttcgccctcgtgCCTCCGCGAAGGTGGGAACCTTTCgaaaagcggagga
agaagaggaagaagagcaggaagtggaggaaggggagggtcctgaaaacg
gggaggaggacggggaggaggtgataaTTGTGGAAGACTATCAGGGGAAA
CGAGACGGCAGTGGGCCCAAGACGTCCGAAAAGCTCGTGTCTTCCGTCGG
ACAAGATCCTGGTGccccgcggccgcctcctcctcccgcgcctcccaccc
acgccaAGATGAGGAAGGTCGCCCCATCCCACCAACGACAGGCACGCTTC
ATCCGCAAGCTCGCCAAGGCCAgccaagaggaggcggaggaggaggacgg
ggagggagggcgccgggagaagggggagaagacgggcggCCCTCCCCGGG
GCACCCTGGCGGCTTTGCTGCcagagacagagggaggcagtgccAGGGCC
CGtgcaggaaaagggagagcggCGGCATCCGCCTCcaaagggaaggcagg
ggcagggagcaCGCGGCTGACGCCCTTGGAGCAGCAGGTGGTGGCCTTGA
AGAGGGCTCACCCGGACACGTTGCTGCTGGTCGAGTGCGGTTATCGGGTC
CGGTTTTTCGGGGAAGACGCCCTGCACGCCAGCCAGGTCCTGGGGATCTA
CACCTACATCGACCACGCCTTCTACGTGGCCTCCATTCCCACCCTCCGGA
TCAAGGTACATTTGAAACGGCTGGTGGAAGCGGGATTCAAGGTGGGAGTG
GTGCGACAGACGGAAACAGCGGCTCTTAAGGCCGCAGGGCTGTCGGCATC
GGGGGCCAAGAGTGGCACATTTCAACGCGAACTGGCAGGCGTCTTCACGC
GTTGTACCTACAACGAGGATGACCCCGCCTTGGTCTTTGCGAACACGGGC
GTGGGGGTGCGGGGGGGGATGTCCTCTCAGACGTCAATAAGCCGATATTT
TCGCAGCAAAGCACCCTCTGCTTCCAATCCTACCCCTACCTCacccttca
cctcctccagcacctctaACACCACTCCTTGCTTGCAttcccctcacctt
cctcccaagAAGAGACCGCCAtcgggccctccttcctcctcctcctcctc
ctcctcctcctcctcctcctcctcctcctcctcctcctcctgcagtCCGC
CCTCCGGCCATGCAATTAATAGGAGTCTGACGCAAGCACCTCCCTCTAAA
CGGCTACGGCTGACgcgccttcgccctcgtgCCTCCGCGAAGGTGGGAAC
CTTTCgaaaagcggaggaagaagaggaagaagagcaggaagtggaggaag
gggagggtcctgaaaacggggaggaggacggggaggaggtgataaTTGTG
GAAGACTATCAGGGGAAACGAGACGGCAGTGGGCCCAAGACGTCCGAAAA
GCTCGTGTCTTCCGTCGGACAAGATCCTGGTGccccgcggccgcctcctc
ctcccgcgcctcccacccacgccaAGATGAGGAAGGTCGCCCCATCCCAC
CAACGACAGGCACGCTTCATCCGCAAGCTCGCCAAGGCCAgccaagagga
ggcggaggaggaggacggggagggagggcgccgggagaagggggagaaga
cgggcggCCCTCCCCGGGGCACCCTGGCGGCTTTGCTGCcagagacagag
ggaggcagtgccAGGGCCCGtgcaggaaaagggagagcggCGGCATCCGC
CTCcaaagggaaggcaggggcagggagcaCGCGGCTGACGCCCTTGGAGC
AGCAGGTGGTGGCCTTGAAGAGGGCTCACCCGGACACGTTGCTGCTGGTC
GAGTGCGGTTATCGGGTCCGGTTTTTCGGGGAAGACGCCCTGCACGCCAG
CCAGGTCCTGGGGATCTACACCTACATCGACCACGCCTTCTACGTGGCCT
CCATTCCCACCCTCCGGATCAAGGTACATTTGAAACGGCTGGTGGAAGCG
GGATTCAAGGTGGGAGTGGTGCGACAGACGGAAACAGCGGCTCTTAAGGC
CGCAGGGCTGTCGGCATCGGGGGCCAAGAGTGGCACATTTCAACGCGAAC
TGGCAGGCGTCTTCACGCGTTGTACCTACAACGAGGATGACCCCGCCTTG
GTCTTTGCGAACACGGGCGTGGGGGTGCGGGGGGGG back to top
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