rna7078, rna7078 (mRNA) Nannochloropsis gaditana

Overview
Namerna7078
Unique Namerna7078
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1548
Alignment locationCM002470.1:394329..395037 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101086g1.7629.mrna
Orig protein idgnl|cribi|Naga_101086g1.7629
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:394329..395037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101086g1gene6844Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7078rna7078-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23613.1cds7061Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7078 ID=rna7078|Name=rna7078|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp
ATAAATGGAGGATTCACCCTCTGATGCTTGATACCAGAGCGCTCTGACGG
GATGGGTTGAAGCGTCGCCGGAAAGGAGACACTGGCGCGCGTCGTACCTA
AATCCCCCAAACAGGCGGTGCATACGGCGTGCTTGCGCGACAAATGGCTG
GGAAAGGAGCGAAAGGAACGGTATAATCTTTGAGTGAGGTACAACCGGCT
TTTATTCTTTACGTGGTTGGCTCCATGTCTTTTGCAAGCCCTCAATCTTT
AAGAACAGACCTTCGAAGCAATTATGTCTTTCTTCATCGAAGTGGCGTGC
GTGTGCGGCGATACCTTCGGAAATGTGACATGTGTACATGGATGCCCTGT
CATCTTTGTACCATTGATTTTCAGGCTTTCGACACCGCACAACCTGAGGT
CCCTCATTACCAAGCTTCTACCATCATGACTTCGGGCCCCTCTTACCTCC
TCGCCGCACGTGTAACCCATACCATCTGGCTCACGCCACTCGTCCACTCG
TTTCAAACCAAGCTCTATCCAGGCTCGTGCCCGCACTCATCTCTTGCTTA
CCTCGCTGGTAGAGCCAACCAGGAATGTGATGTCCGCCGCGCCCACTAGC
ACCCTGTCTTCCTCCTCTTCATCGTCCACTGCCTTCATCCGCACCACCAC
CAACTTTATAAGCCGTCAAGCCCTGATCGAGGGCCCCCAAAACGTGGAAA
TGCGGGGCCGGGTACGCTTTCCCCTCCTGTCTCGGACGTTACCCTTACGT
CTCCATTCCTTTTCGTGGCATGTCCTCCATAGTCTTAACGCGCCTTTCAT
CCCCTTGCACCCACCCACGCATCGCGCCATTTTCCCCTAGAGCATCGTGG
ACGATGAGGTCACCATCCGCGGGGACCTCGCTCCCATTCGCGTCGGCCAT
TTTTGCTACTTCGCGGCCGGCTCTGTGCTCAGCCCCCCCTCCCTCCACCT
CCTTCCCACGACGGAGCGCAAAAAGCCGCAGACCCAAGAGCCTCGTCGGC
ACCTCCCACAGCAGCAACATCCGCCTCCTAATTCCCCAGGGGTGAAGGCT
TCCCACATCCCCATGTGCATCGGGAGCATGACGAGTGTCGGGAGAGATGC
GGTCGTCCAGGCGGCCGCTGTGGGAGCATGTGTGGAGGTGGGCGACAATG
CCGTTATTTCCGCCCGTTGCATTTTGAAAGACGGTTGCCGGATCGCGCCT
AACACGGTCTTGGCGCCTGACACGGTAGTGCCTCCCTTCGCCTTGGTGGC
GGGCCGGCCGGGGCAGATCGTGGGCGAGCTCCCGCCCAGTGTGATGGTGA
TGAGGAAGGAGGCGGCGCAGGGGAGGTACCGGCGGAAGAGGAGGTGGATA
CTGGAGGGGGGGGTGAGGTAGAGGACAGGGGTCATGTAGCGGTGTTCATG
AAGGGGGGGGTGCCGACAAAGCCGTCGGAGAAGGGGAGCGGGAGGATGAG
GGCAGCCCATCCCCCCATGCACATGAAACCAAACATCAGGAACAAGTTTG
TCCCAGCACGTCCAATATATGTAAATAATATGTGTCACGTCATGCACA
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protein sequence of rna7078

>rna7078-protein ID=rna7078-protein|Name=rna7078|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MVSARETTPLNAARTHPALTNSSPPGEEEYVFEESLTSTHGRSILAFGIT
VISVIFGLFIILTAWPHAAGQAGSSSFPPDGPPQPPSLRPKDPVDPASIP
TVDTAVVGSPTRPHARLQASGCPPLAAPPPGHRFLQIKNNCNESLWLGVI
PAGAAVPPGNSWLWEAGECKTLTVVSSLASLRVWGRTHCDADFNCLTGSC
RWLEW
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mRNA from alignment at CM002470.1:394329..395037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7078 ID=rna7078|Name=rna7078|organism=Nannochloropsis gaditana|type=mRNA|length=709bp|location=Sequence derived from alignment at CM002470.1:394329..395037+ (Nannochloropsis gaditana)
ATGGTTTCGGCCAGGGAGACGACGCCGCTAAACGCCGCCCGGACGCATCC
GGCCCTCACCAACAGCTCTCctccaggggaggaggaatacgTTTTCGAGG
AAAGCCTCACGTCAACGCATGGTCGAAGTATCCTGGCATTTGGAATTACT
GTAATTTCTGTCATTTTCGGCCTCTTCATCATTTTGACCGCATGGCCACA
CGCCGCTGGGCAGgcgggctcctcctccttcccccccgatGGCCCGCCtc
aacccccctccctccgacctAAGGACCCGGTCGACCCTGCTTCGATCCCG
ACGGTGGACACTGCCGTCGTTGGGAGCCCCACACGCCCGCACGCTCGATT
ACAAGCCTCCGGAtgcccgcccctcgccgcccctccccccggacACCGCT
TCTTGCAAATTAAGAACAATTGCAACGAGTCTCTGTGGCTCGGCGTGATC
CCTGCCGGTGCCGCCGTTCCCCCGGGCAACTCCTGGTTGTGGGAAGCCGG
CGAGTGCAAGACGCTGACCGTGGTCTCCTCCCTAGCCTCCCTTCGTGTCT
GGGGGCGCACCCACTGCGACGCCGACTTCAACTGTTTGACGGGCTCCTGC
CGCGTGGACGCTTACGGAGGCTGTACCACTGCCGGCGAGACGCCTTGTAC
CCTGTGGGAAGCCACCTTGCAAGACCACTGCACGCCCGAGCCAGTGGCTG
gaatggtga
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Coding sequence (CDS) from alignment at CM002470.1:394329..395037+

>rna7078 ID=rna7078|Name=rna7078|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002470.1:394329..395037+ (Nannochloropsis gaditana)
ATGGTTTCGGCCAGGGAGACGACGCCGCTAAACGCCGCCCGGACGCATCC
GGCCCTCACCAACAGCTCTCctccaggggaggaggaatacgTTTTCGAGG
AAAGCCTCACGTCAACGCATGGTCGAAGTATCCTGGCATTTGGAATTACT
GTAATTTCTGTCATTTTCGGCCTCTTCATCATTTTGACCGCATGGCCACA
CGCCGCTGGGCAGgcgggctcctcctccttcccccccgatGGCCCGCCtc
aacccccctccctccgacctAAGGACCCGGTCGACCCTGCTTCGATCCCG
ACGGTGGACACTGCCGTCGTTGGGAGCCCCACACGCCCGCACGCTCGATT
ACAAGCCTCCGGAtgcccgcccctcgccgcccctccccccggacACCGCT
TCTTGCAAATTAAGAACAATTGCAACGAGTCTCTGTGGCTCGGCGTGATC
CCTGCCGGTGCCGCCGTTCCCCCGGGCAACTCCTGGTTGTGGGAAGCCGG
CGAGTGCAAGACGCTGACCGTGGTCTCCTCCCTAGCCTCCCTTCGTGTCT
GGGGGCGCACCCACTGCGACGCCGACTTCAACTGTTTGACGGGCTCCTGC
CGCTGGCTGgaatggtgaATGGTTTCGGCCAGGGAGACGACGCCGCTAAA
CGCCGCCCGGACGCATCCGGCCCTCACCAACAGCTCTCctccaggggagg
aggaatacgTTTTCGAGGAAAGCCTCACGTCAACGCATGGTCGAAGTATC
CTGGCATTTGGAATTACTGTAATTTCTGTCATTTTCGGCCTCTTCATCAT
TTTGACCGCATGGCCACACGCCGCTGGGCAGgcgggctcctcctccttcc
cccccgatGGCCCGCCtcaacccccctccctccgacctAAGGACCCGGTC
GACCCTGCTTCGATCCCGACGGTGGACACTGCCGTCGTTGGGAGCCCCAC
ACGCCCGCACGCTCGATTACAAGCCTCCGGAtgcccgcccctcgccgccc
ctccccccggacACCGCTTCTTGCAAATTAAGAACAATTGCAACGAGTCT
CTGTGGCTCGGCGTGATCCCTGCCGGTGCCGCCGTTCCCCCGGGCAACTC
CTGGTTGTGGGAAGCCGGCGAGTGCAAGACGCTGACCGTGGTCTCCTCCC
TAGCCTCCCTTCGTGTCTGGGGGCGCACCCACTGCGACGCCGACTTCAAC
TGTTTGACGGGCTCCTGCCGCTGGCTGgaatggtga
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Synonyms
Publications