rna7049, rna7049 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7049
Unique Name	rna7049
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1197
Alignment location	CM002470.1:321695..324261 -

Link to JBrowse

Properties


Property Name	Value
Product	Transmembrane transporter protein, chloroquine resistant
Orig transcript id	gnl\|cribi\|Naga_100165g11.9693.mrna
Orig protein id	gnl\|cribi\|Naga_100165g11.9693
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:321695..324261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100165g11	gene6815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7049	rna7049-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23641.1	cds7032	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:321695..324261-
coding sequence from alignment at CM002470.1:321695..324261-

mRNA sequence

>rna7049 ID=rna7049|Name=rna7049|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGTGGGCCTTCGCCTTGGAGGAAGCGGGCGACCTGCACCGATCGGCGGA
GGTTGCGCGGAGCGTGTTGGAAGAGGACCCGATGGACGACATAGCCCTGC
ACGCACTTGTCCATACGTACGAGATGGTGGCCGCCCGTCGCGAGGGTAGG
GAAGCGTTTCGGGAGGAGGGAATGCCCCCGTCCTTGTTCGCGCACCACAT
TGCGTGGCACCGCGCCGTGATGGCTTTAGGCTGGGAAGAGGGGGGGATGG
AGGAAGGCTGGGAGGCGGTGGTTTGGCGGGTGCTGGATGACGTCTTGCTG
AAGGATGAGGGGCGAAGGGCGCCGGCCACGCCTTTAGCGATGGCAGATGC
CTCGAGTCTGCTGTGGAGGATGATGCTGGTCGGCGAGGGGGGGGGAGAAG
ACGGTGAGGGGGAGGACAGGGTAATGAAACGGCTTCACGCTCTTCGTAAG
TGGTACCAGGAGGGTGGCTACGAAGACATGCATAGCACCAGCTTCAATGA
CGTGCACATGCTCATGTGTCTGGCTCGAGTCGATCTGCCCGCCGCGCATC
GGGCCTTGGCGTCCATGCGTCGTCTCGCGGCGTCCGCGGGGGAAAGGAGG
GCTCTAAACAGGCGTGGACGTGGGGGTAGTCAACGATTGCACAGGCAGTT
GAGGAATTGGCTGGTCTGTCAGTTTTTCCGTCTCCCTTTTCCTCCCCCGC
GGTCCTCGTGGCTACAGCGGGGTTGGTGTGCCGAGGATGAATTCGACGGG
AGGGAGAGCTTCTCTGTCACTACCTCGTCAGATTTTTCCTCCTCCTTGCC
CACCCCGCAGTCGACCAACGCTAAGGTCCTAGCAATGGTGGGATTGGACG
TCGGGGCTGCCCTGATCAAGTTCGTAGAGGGCGACTACGCGGAGACCGTC
CGCCTGCTCTCGGCCTCGGCCCCCCATTGGCACCTGGTGGGGGGCTCCCA
CGCCCAGCGAGACGTCCTGGCCCTGACGCTCATCACGGCTTGCTTACGGA
ATAGGACGGACTTGGCCCGGGCTCGGAGACTGTTGGCGGAACGGGCGATG
GAGAAGGACCCGGAGAATGAGGAAGGGACTTGGACCTTGCTGCGGCAGCT
GGAGGGCCAAGGAAGACGGGAGGGAGGGGATTGGGAGGAAAAAGGGTGCT
GGGAGGAGAAGGTGTACACAAGACACCTGGATAACGCGGAGATATAA

protein sequence of rna7049

>rna7049-protein ID=rna7049-protein|Name=rna7049|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MEVREQILGAPHSQDAASGVDELLSEDATAQGDLPDGKRETRDLEASIPS
LLLGEAPRNRRNLVVASCALFFIVLAVVLLGTLLTVITKVMTVPMANYTA
ALTLQTTFAYVPLTLIYMLFKWKAGKLAYADLIYPWRPVTAVACLYAVGQ
ILLIYGTQYTSGPMQVILSQSAIPFSMGISHMMLGSTYRCRHYVGAVLVL
LGILLAVGGSLAQEKVGRFEAGWIVGYVLSWIPYVIYTVYGESLYRSRAR
PPDPVIFTGIISAVQFLFLCLLAPTLPYLKRPSAPVSSLPASLIAGGKCL
VGINTLPTDDCWPLAPILVLSYNVLNVVLLYPTFALLEHGSSNLFWLACT
LIVPFSGFAFSLPFIPGAEPVTVEEGLSLLVIVFGLGIYGWSKESAVRGV
EALKQAAPKRTSKKPLVGVGVENPEVSVEMAPLDATCSSFSTSLSSSSAP
SSPLPACLLEARADDEEEDRDRHSCDVVGWKRKIAGVTEAAEEDGKASRP
PRAVLLAVEEERARRRQ

mRNA from alignment at CM002470.1:321695..324261-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7049 ID=rna7049|Name=rna7049|organism=Nannochloropsis gaditana|type=mRNA|length=2567bp|location=Sequence derived from alignment at CM002470.1:321695..324261- (Nannochloropsis gaditana)
CACGACAAACCCAATGTTACGCCAAAAATTTGAACAATTAGCCCACAGTG
ACGATGGAGGTACGGGAGCAAATCTTGGGTGCGCCGCACAGCCAAGATGC
AGCATCGGGAGTGGACGAGGTAAGCACAGAGATCGTGCACTAATTCATGA
CGACAACTTGCTTGACACGCAAAACTTCAACAGATTTCAAGACCCAGGAC
TGTAGGTTGTAAACACAAAGTTTTGAATGGGGGAAATGATCACCAGTGGT
CGAGAAGGAAACATTTGTCTCTGTATGGCTCAATTTCATCTCCCAAATCT
CAACAATTTTTCAGCTCCTGAGCGAGGATGCAACAGCACAAGGAGACCTC
CCAGACGGCAAAAGAGAGACACGGGACTTAGAAGCATCGATACCATCTCT
TCTCCTCGGCGAAGCTCCACGAAACAGAAGAAACCTTGTTGTAGCCTCCT
GCGCCCTTTTCTTCATCGTTTTGGCCGTCGTACTCTTAGGCACTCTCTTG
ACAGTCATCACCAAAGTCATGACTGTGCCTATGGCCAATTACACCGCCGC
CCTGACCCTGCAAACAACGTTTGCTTACGTGCCATTGACTTTGATTTACA
TGCTTTTCAAATGGAAAGCTGGCAAGCTTGCGTACGCTGACTTGATCTAC
CCCTGGCGGCCCGTTACTGCCGTGGCATGCCTGTACGCCGTGGGACAGAT
TCTGCTCATATACGGTACTCAATACACGAGCGGACCGATGCAGGTCATCC
TTTCCCAATCTGCGATACCCTTCAGCATGGGGATCTCCCATATGATGCTG
GGCTCGACCTACCGTTGCAGGCACTATGTGGGCGCCGTCCTTGTCCTCCT
CGGCATCCTCCTCGCTGTCGGCGGCTCCCTGGCTCAGGAGAAGGTGGGGC
GCTTTGAGGCCGGGTGGATAGTCGGGTACGTCCTCTCCTGGATCCCCTAC
GTCATCTACACGGTCTACGGTGAGAGCCTGTACAGAAGCCGGGCCAGGCC
GCCCGACCCCGTCATCTTCACCGGGATCATCTCAGCCGTCCAGTTCCTCT
TCCTCTGCCTCCTCGCCCCCACCCTCCCCTACCTCAAACGCCCTTCCGCG
CCCGTGTCCTCTCTTCCCGCCTCCCTTATCGCCGGTGGCAAATGCCTGGT
CGGCATCAACACCCTCCCCACCGACGACTGCTGGCCCTTGGCGCCCATCC
TCGTGCTCTCCTACAACGTCCTCAACGTCGTACTCCTGTACCCGACCTTC
GCCCTCCTCGAGCACGGCTCCTCCAACCTCTTCTGGCTCGCCTGTACCCT
GATCGTGCCCTTCTCTGGCTTTGCCTTCTCCCTCCCTTTCATTCCAGGGG
CGGAACCCGTGACGGTGGAGGAGGGTCTCAGCCTTCTCGTCATCGTTTTC
GGCCTGGGGATCTACGGATGGTCCAAGGAGTCGGCGGTGCGAGGTGTGGA
GGCGCTCAAGCAAGCCGCTCCCAAGCGTACCTCCAAGAAACCTTTAGTCG
GTGTTGGCGTTGAAAACCCGGAGGTCTCAGTCGAAATGGCTCCTCTTGAC
GCCACCTGTTCCTCCTTCTCCACCTCTTTGTCCTCCTCCTCGGCCCCCTC
CTCCCCCCTTCCCGCATGCCTTCTGGAAGCTCGAGCAGACGATGAGGAAG
AAGACCGTGACCGCCATTCTTGCGATGTGGTAGGATGGAAGAGGAAGATC
GCAGGTGTCACAGAAGCTGCTGAGGAGGATGGGAAGGCCTCGAGGCCCCC
GAGGGCTGTGCTACTCGCTGTCGAGGAGGAGAGGGCGAGAAGGAGGCAAT
GACGGGAGAAAATGGGGCACATCTGACGAAAGGGAGGCAAATCCATGGAG
TGAGGCTGCAGGATGGATGGATAAAGGAATGCGGTGCATGAAAGGGGGCC
CGAGGACGACCGGGCTGCCGTTTCTCTAGCCGACTCCCCGACTGAGACGG
ATCCACTCGTGAAGGGCGGGCTACATGCCACTTGTGAGCCCCGAGCCTCC
CCGAATAGCATGGGATGACTTTTCATTCGCCCAGCGAGCAAAGACTTAGG
TGCTATCTCGCCGGCCCTCCCTTCTGACAAGTGTGTGCGGGAGGAGAGCG
GTTCCGCCCGTCACAGCCGTCTCATCAAGGAGCGGCCGCCTTGGCTTTTC
GCAGTCGGCATGAAATTTCTTAAGAGGTTAGAAGACCTCTTGAGGCTGCT
GTCTTCTCTCCAAAGTTGGTCGCGAGACGCAAGGGAGGCCCTCTGCCGGA
GAGCTGGGAGTCTGGGGGTGGAAGTGACGCGCACGGCGACGTCAAGGGAG
GCCTGCGGTTTCACTCCGAGAGGACCCCATACATCGCTGTCGAGCATGCT
CTAGGATCCTGTGTGCTTTCGTCATCCATTGGCGTGGCACCTACAGGTAA
TAAGATATAGGTGTTGACGGCTTGAATATGAGGTATGCCACTGAACGTGT
CAAGATGAGGATTATCTTGTGCACTTGAAAATGGAACAAAGGACGGTAAA
ATCTGGCAACAATTCTCCTAACTCAATGAACTTCGAACCCCAAAGTAAAT
TGTGCCGTCCTGCACCT

Coding sequence (CDS) from alignment at CM002470.1:321695..324261-

>rna7049 ID=rna7049|Name=rna7049|organism=Nannochloropsis gaditana|type=CDS|length=3108bp|location=Sequence derived from alignment at CM002470.1:321695..324261- (Nannochloropsis gaditana)
CTCCTGAGCGAGGATGCAACAGCACAAGGAGACCTCCCAGACGGCAAAAG
AGAGACACGGGACTTAGAAGCATCGATACCATCTCTTCTCCTCGGCGAAG
CTCCACGAAACAGAAGAAACCTTGTTGTAGCCTCCTGCGCCCTTTTCTTC
ATCGTTTTGGCCGTCGTACTCTTAGGCACTCTCTTGACAGTCATCACCAA
AGTCATGACTGTGCCTATGGCCAATTACACCGCCGCCCTGACCCTGCAAA
CAACGTTTGCTTACGTGCCATTGACTTTGATTTACATGCTTTTCAAATGG
AAAGCTGGCAAGCTTGCGTACGCTGACTTGATCTACCCCTGGCGGCCCGT
TACTGCCGTGGCATGCCTGTACGCCGTGGGACAGATTCTGCTCATATACG
GTACTCAATACACGAGCGGACCGATGCAGGTCATCCTTTCCCAATCTGCG
ATACCCTTCAGCATGGGGATCTCCCATATGATGCTGGGCTCGACCTACCG
TTGCAGGCACTATGTGGGCGCCGTCCTTGTCCTCCTCGGCATCCTCCTCG
CTGTCGGCGGCTCCCTGGCTCAGGAGAAGGTGGGGCGCTTTGAGGCCGGG
TGGATAGTCGGGTACGTCCTCTCCTGGATCCCCTACGTCATCTACACGGT
CTACGGTGAGAGCCTGTACAGAAGCCGGGCCAGGCCGCCCGACCCCGTCA
TCTTCACCGGGATCATCTCAGCCGTCCAGTTCCTCTTCCTCTGCCTCCTC
GCCCCCACCCTCCCCTACCTCAAACGCCCTTCCGCGCCCGTGTCCTCTCT
TCCCGCCTCCCTTATCGCCGGTGGCAAATGCCTGGTCGGCATCAACACCC
TCCCCACCGACGACTGCTGGCCCTTGGCGCCCATCCTCGTGCTCTCCTAC
AACGTCCTCAACGTCGTACTCCTGTACCCGACCTTCGCCCTCCTCGAGCA
CGGCTCCTCCAACCTCTTCTGGCTCGCCTGTACCCTGATCGTGCCCTTCT
CTGGCTTTGCCTTCTCCCTCCCTTTCATTCCAGGGGCGGAACCCGTGACG
GTGGAGGAGGGTCTCAGCCTTCTCGTCATCGTTTTCGGCCTGGGGATCTA
CGGATGGTCCAAGGAGTCGGCGGTGCGAGGTGTGGAGGCGCTCAAGCAAG
CCGCTCCCAAGCGTACCTCCAAGAAACCTTTAGTCGGTGTTGGCGTTGAA
AACCCGGAGGTCTCAGTCGAAATGGCTCCTCTTGACGCCACCTGTTCCTC
CTTCTCCACCTCTTTGTCCTCCTCCTCGGCCCCCTCCTCCCCCCTTCCCG
CATGCCTTCTGGAAGCTCGAGCAGACGATGAGGAAGAAGACCGTGACCGC
CATTCTTGCGATGTGGTAGGATGGAAGAGGAAGATCGCAGGTGTCACAGA
AGCTGCTGAGGAGGATGGGAAGGCCTCGAGGCCCCCGAGGGCTGTGCTAC
TCGCTGTCGAGGAGGAGAGGGCGAGAAGGAGGCAATGAATGGAGGTACGG
GAGCAAATCTTGGGTGCGCCGCACAGCCAAGATGCAGCATCGGGAGTGGA
CGAGCTCCTGAGCGAGGATGCAACAGCACAAGGAGACCTCCCAGACGGCA
AAAGAGAGACACGGGACTTAGAAGCATCGATACCATCTCTTCTCCTCGGC
GAAGCTCCACGAAACAGAAGAAACCTTGTTGTAGCCTCCTGCGCCCTTTT
CTTCATCGTTTTGGCCGTCGTACTCTTAGGCACTCTCTTGACAGTCATCA
CCAAAGTCATGACTGTGCCTATGGCCAATTACACCGCCGCCCTGACCCTG
CAAACAACGTTTGCTTACGTGCCATTGACTTTGATTTACATGCTTTTCAA
ATGGAAAGCTGGCAAGCTTGCGTACGCTGACTTGATCTACCCCTGGCGGC
CCGTTACTGCCGTGGCATGCCTGTACGCCGTGGGACAGATTCTGCTCATA
TACGGTACTCAATACACGAGCGGACCGATGCAGGTCATCCTTTCCCAATC
TGCGATACCCTTCAGCATGGGGATCTCCCATATGATGCTGGGCTCGACCT
ACCGTTGCAGGCACTATGTGGGCGCCGTCCTTGTCCTCCTCGGCATCCTC
CTCGCTGTCGGCGGCTCCCTGGCTCAGGAGAAGGTGGGGCGCTTTGAGGC
CGGGTGGATAGTCGGGTACGTCCTCTCCTGGATCCCCTACGTCATCTACA
CGGTCTACGGTGAGAGCCTGTACAGAAGCCGGGCCAGGCCGCCCGACCCC
GTCATCTTCACCGGGATCATCTCAGCCGTCCAGTTCCTCTTCCTCTGCCT
CCTCGCCCCCACCCTCCCCTACCTCAAACGCCCTTCCGCGCCCGTGTCCT
CTCTTCCCGCCTCCCTTATCGCCGGTGGCAAATGCCTGGTCGGCATCAAC
ACCCTCCCCACCGACGACTGCTGGCCCTTGGCGCCCATCCTCGTGCTCTC
CTACAACGTCCTCAACGTCGTACTCCTGTACCCGACCTTCGCCCTCCTCG
AGCACGGCTCCTCCAACCTCTTCTGGCTCGCCTGTACCCTGATCGTGCCC
TTCTCTGGCTTTGCCTTCTCCCTCCCTTTCATTCCAGGGGCGGAACCCGT
GACGGTGGAGGAGGGTCTCAGCCTTCTCGTCATCGTTTTCGGCCTGGGGA
TCTACGGATGGTCCAAGGAGTCGGCGGTGCGAGGTGTGGAGGCGCTCAAG
CAAGCCGCTCCCAAGCGTACCTCCAAGAAACCTTTAGTCGGTGTTGGCGT
TGAAAACCCGGAGGTCTCAGTCGAAATGGCTCCTCTTGACGCCACCTGTT
CCTCCTTCTCCACCTCTTTGTCCTCCTCCTCGGCCCCCTCCTCCCCCCTT
CCCGCATGCCTTCTGGAAGCTCGAGCAGACGATGAGGAAGAAGACCGTGA
CCGCCATTCTTGCGATGTGGTAGGATGGAAGAGGAAGATCGCAGGTGTCA
CAGAAGCTGCTGAGGAGGATGGGAAGGCCTCGAGGCCCCCGAGGGCTGTG
CTACTCGCTGTCGAGGAGGAGAGGGCGAGAAGGAGGCAATGAATGGAGGT
ACGGGAGCAAATCTTGGGTGCGCCGCACAGCCAAGATGCAGCATCGGGAG
TGGACGAG

Synonyms

Publications