EWM23721.1, cds6953 (CDS) Nannochloropsis gaditana

Overview
NameEWM23721.1
Unique Namecds6953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:134471..135832 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23721.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100688g2.1213.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:134471..135832 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013656PAS_4
IPR000014PAS
Homology
BLAST of EWM23721.1 vs. NCBI_GenBank
Match: gi|585104880|gb|EWM23721.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0
Query:    1 MVTERTAMKDLLHAATQLAPAGNEGGLREQGMSGISFPSCQSSKPKDLTASAASGKIRTSVGQSRMSDLLYEFPRETAKDTRMEDRDHGVRMNPFAQNSTTQQGWPSLSFSARTGINQEPSRGTLGVRSHQLPRSFLSSYQNYRPVQPHYPFASHPLQSQQQSRAQGAQVIGGASISFIPDGYLASGYQAAPKHPPAFAPSGSITVPSSSSSSSSSSSTSPTTSSSCTSVSPSTSFSSNSSSDAEAFSKRPDPLLPLAPPAALATISLPPSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
            MVTERTAMKDLLHAATQLAPAGNEGGLREQGMSGISFPSCQSSKPKDLTASAASGKIRTSVGQSRMSDLLYEFPRETAKDTRMEDRDHGVRMNPFAQNSTTQQGWPSLSFSARTGINQEPSRGTLGVRSHQLPRSFLSSYQNYRPVQPHYPFASHPLQSQQQSRAQGAQVIGGASISFIPDGYLASGYQAAPKHPPAFAPSGSITVPSSSSSSSSSSSTSPTTSSSCTSVSPSTSFSSNSSSDAEAFSKRPDPLLPLAPPAALATISLPPSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED
Sbjct:    1 MVTERTAMKDLLHAATQLAPAGNEGGLREQGMSGISFPSCQSSKPKDLTASAASGKIRTSVGQSRMSDLLYEFPRETAKDTRMEDRDHGVRMNPFAQNSTTQQGWPSLSFSARTGINQEPSRGTLGVRSHQLPRSFLSSYQNYRPVQPHYPFASHPLQSQQQSRAQGAQVIGGASISFIPDGYLASGYQAAPKHPPAFAPSGSITVPSSSSSSSSSSSTSPTTSSSCTSVSPSTSFSSNSSSDAEAFSKRPDPLLPLAPPAALATISLPPSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453          
BLAST of EWM23721.1 vs. NCBI_GenBank
Match: gi|585104808|gb|EWM23655.1| (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 101.293 bits (251), Expect = 2.245e-19
Identity = 60/178 (33.71%), Postives = 90/178 (50.56%), Query Frame = 0
Query:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCV-----GRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIR 450
            +RA R D S  TP E+ + +K RAR YSA  RERQ+ +  ALR +V  L VYK +V+ AP+   +LS D+Q ++L+AN    + F   P+        GR +WE +   D+  +  A    V+ K  V    C +    G   K      ++       + V +++R   QGLIL+IR
Sbjct:  326 RRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHLVRAVPCTVWLPSGSVPKHDARGPQQ------SLKVLITLRSSAQGLILIIR 497          
BLAST of EWM23721.1 vs. NCBI_GenBank
Match: gi|669141928|ref|XP_008606526.1| (hypothetical protein SDRG_02707 [Saprolegnia diclina VS20] >gi|530741810|gb|EQC40052.1| hypothetical protein SDRG_02707 [Saprolegnia diclina VS20])

HSP 1 Score: 67.781 bits (164), Expect = 1.242e-8
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 0
Query:  293 KQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCV---GRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRE 452
            K ++ +ER R +S + R R+   +  L+Q+V+ L +YK +VD+ P++ A+++AD   K+LYA A+F+R  L +PE  +     S +E+VH  D   ++ A  S + + +++     ++  +KG   K                  A+S R G  G++   R E
Sbjct:  286 KADKSRERNRDHSRKSRLRKKVFVETLKQEVKQLQIYKDLVDQNPDLIALVTADHDRKMLYATASFSR-VLGYPEKKLMADTVSFFELVH-PDHVAMLKAELSKLAKFQDINSIPFQIKHAKGMYWK-----------------AALSARVGEHGVVFTSRVE 429          
The following BLAST results are available for this feature:
BLAST of EWM23721.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104880|gb|EWM23721.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|585104808|gb|EWM23655.1|2.245e-1933.71pas pac sensor hybrid histidine kinase [Nannochlor... [more]
gi|669141928|ref|XP_008606526.1|1.242e-828.22hypothetical protein SDRG_02707 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6969rna6969Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications