|
|
Properties
| Property Name | Value |
|---|
| Product | alpha beta hydrolase fold protein |
| Orig transcript id | gnl|cribi|Naga_100861g1.10242.mrna |
| Orig protein id | gnl|cribi|Naga_100861g1.10242 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:729837..732068 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6894 ID=rna6894|Name=rna6894|organism=Nannochloropsis gaditana|type=mRNA|length=1910bp
CATGCACGTCCCTACACAGCTATCTCCATCTTCTTCGACTTTCACGCGAG
AAAACTGACTCCCGCTTGCCTGCGCGGCATTTTGGTCAGAGAATCGTTTG
TTAAAGTCCTTCGAATTGGACGCAGGCGGCTTTTCTTGACAGCCGCGGTT
GCATTTCCCCTTTTTTCAACTCTGGAGCCCTCATCAGCCCAAGCGCCATA
TTACCGAATCCGAAGGTAGATTTCGCAGCCCGACATCCTCTCCCATGGCG
TGCTACTTTCCTGTCTCCCTCTTCCCTTTGATCGCCTCCATCACCTTTTT
AACCAACCTCCCAAGTACGACATATGCGTTTCATGCTCTTCGACCTCCAG
CTCCCCTCTCGACGACGACATCATCCCATTTACGCTCTTCCATCCCACGA
GCGCCTTCATTTCGACGCGGCATTCTGTCAATTCCTTCCTCCTCCTACTC
ATCAACCTGCTTGGAGGCCACCACCTCCCTCTCTCCTTCCTCCCTTCCGA
CTCCTTCATCCCCCCTCCCGTACGAGGAGGAGCTCCTCGCCCTCCCTGAT
GGCCTCACTGTCGCCGCCAAAGTGTGGGGCCCGGCCTCGGGCCCCCCTGT
CCTCGCCCTGCACGGATGGCTTGACAACGCCAACACATTCGACCGACTGG
CCCCTTACGTCGCCGCCGCCGGTTTCCGGGTCGTCTGCATTGACTTCCCC
GGGCACGGCAGGTCTTCGCACCGGTCCCCCGATGCCGTCTATGCCTTCAC
CGACTACGTCTATTATGCGTGGGCGCTGGCCAAGGCGCTCAAGTGGAAGA
AATTTCAAATCCTCGGCCATTCTCTCGGGGCGGGCATTGGCCTTGCCTTG
GCCGGGACATACCCGGAGCTGGTCACGCGGATCGTCTGCGTAGAAACCTT
AGGAATCATCTCCAAACCCGCCGACTCCGCCCCCACCACCTTGAGAGAAG
CGATCAGGCAACGTGCCACCCTGGTGGAAGTCATGCGCAAGTCGGAGGAG
AGGGCGGAAGGGAAGAAAGGGGAAATAGGGGTGGGCAACAAGGTATACGC
GTCCGTGGAGGAGGCCATCCAGGCCCGTCTGAACACGGTTGGCAAGCTAC
CCGGAGCACAGACCTTGGAGGCCTCTTCGGCGGCGATTTTGATCGGTCGG
GGAGCGGGGCCTGCCGCCACGCCTCATGCGGCGGACCTGGTGCCGGGGGA
GGGCGGGGGGGAGGGAGGGGTCCGCTTTCGCCACGACCAACGCTTGGCCG
CCTCGGCGCACATTTACTTGACGGAAGAGCAGTCCCGCGCGTTTTTGATG
GCAAGTCGATGCCCGGTGTTGTTGCTTCGGGGAGAAGAGGGTTGGCCGGC
TGCCTCCCCCGAGGAGGAAATATTGCGCGAAGCCGCTTTGGGCCCCCGGT
TGACCGTGTTGAGAGTCCCGGGGAGCCACCATCTGCACCTAGACGCCAGC
ACCTGCACTGAAGGTGCGGTGATGCGGCCAATAGTGAGGTTTTTGGAGGA
AGGGAGGGAAGGGGTATAGACCGGGGGGGGAAGGAAGCTTGGAGGAGACT
CTTGGGAAGGCAGGTTGGGGGGTGTTGATGAGGGAGGATGTGTGGTGTTA
GGAGGGGAGGAAGAGGAAGGGTAGGGGGGGGGGGGGAGGCAGGGAGTCAG
AGCGTAAAGTGAGTGCCGGGAAGTGTCTCGGGACCTGGATCTAGGATGGA
GGAGGCGGCGATGAAGGGGGGGGGGGATTCAGGGTGTACTTTATAGACGG
TTGGAGTGGATGGCTTTGACGAGGGATGGGGAGTGGCGCGAGGTAACTTT
TGCGGGGAGCTCTTGGAAGCCGTCCACAAAGAGGAAGACGTCAATTTTGC
GCGAGTCGTGTCCCGGGTGGCTTTTTTGGGCCTCGAGAGAAAAGAGTATC
CGTGTGATGT back to topprotein sequence of rna6894 >rna6894-protein ID=rna6894-protein|Name=rna6894|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MACYFPVSLFPLIASITFLTNLPSTTYAFHALRPPAPLSTTTSSHLRSSI
PRAPSFRRGILSIPSSSYSSTCLEATTSLSPSSLPTPSSPLPYEEELLAL
PDGLTVAAKVWGPASGPPVLALHGWLDNANTFDRLAPYVAAAGFRVVCID
FPGHGRSSHRSPDAVYAFTDYVYYAWALAKALKWKKFQILGHSLGAGIGL
ALAGTYPELVTRIVCVETLGIISKPADSAPTTLREAIRQRATLVEVMRKS
EERAEGKKGEIGVGNKVYASVEEAIQARLNTVGKLPGAQTLEASSAAILI
GRGAGPAATPHAADLVPGEGGGEGGVRFRHDQRLAASAHIYLTEEQSRAF
LMASRCPVLLLRGEEGWPAASPEEEILREAALGPRLTVLRVPGSHHLHLD
ASTCTEGAVMRPIVRFLEEGREGV back to topmRNA from alignment at CM002469.1:729837..732068+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6894 ID=rna6894|Name=rna6894|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp|location=Sequence derived from alignment at CM002469.1:729837..732068+ (Nannochloropsis gaditana)
CATGCACGTCCCTACACAGCtatctccatcttcttcgaCTTTCACGCGAG
AAAACTGACTCCCGCTTGCCTGCGCGGCATTTTGGTCAGAGAATCGTTTG
TTAAAGTCCTTCGAATTGGACGCAGGCGGCTTTTCTTGACAGCCGCGGTT
GCAtttccccttttttcaaCTCTGGAGCCCTCATCAGCCCAAGCGCCATA
TTACCGAATCCGAAGGTAGATTTCGGTAAGTTTGTCTGATATTCATGACT
CGGGCACAGGATTCCACCCCTTAATTCTATTGATGGTCGATTCGGGCCGT
AAATTTCACCCCCTTACCATCCAATGTGCCACTCTAGCAGCCCGACATCC
TCTCCCATGGCGTGCTActttcctgtctccctcttccctttgatcgcctc
catcaccttTTTAACCAACCTCCCAAGTACGACATATGCGTTTCATGCTC
TTCGACCTCCAGCTCCCCTCTCGACGACGACATCATCCCATTTACGCTCT
TCCATCCCACGAGCGCCTTCATTTCGACGCGGCATTCTGTcaattccttc
ctcctcctactcATCAACCTGCTtggaggccaccacctccctctctcctt
cctcccttccgactccttcatcccccctcccgtacgaggaggagctcctc
gccctccctgaTGGCCTCACTGTCGCCGCCAAAGTGTGGGGCCCGGCCTC
GGGCCCCCCTGTCCTCGCCCTGCACGGATGGCTTGACAACGCCAACACAT
TCGACCGACTGGCCCCTTacgtcgccgccgccggttTCCGGGTCGTCTGC
ATTGACTTCCCCGGGCACGGCAGGTCTTCGCACCGGTCCCCCGATGCCGT
CTATGCCTTCACCGACTACGTCTATTATGCGTGGGCGCTGGCCAAGGCGC
TCAAGTGGAAGGTAACCctcgcttctttttcctccatttctctctTGTCT
TTTTCGCCCCTTGGgggtccttccctccagtccgcggcgcctcctccttc
ctccctcacagacattccccttctccttgttccCCCCGTGCATGTTTGCC
CAGCTTTTTCCCGGTCGACCGCTGGTTCCTGAccactttcccccccttcg
atccctcccttcaacCCTCAGAAATTTCAAATCCTCGGCCATTCTCTCGG
GGCGGGCATTGGCCTTGCCTTGGCCGGGACATACCCGGAGCTGGTCACGC
GGATCGTCTGCGTAGAAACCTTAGGAATCATCTCCAAACCCGCCGactcc
gcccccaccaccttgaGAGAAGCGATCAGGCAACGTGCCACCCTGGTGGA
AGTCATGCGCAagtcggaggagagggcggaagggaagaaaggggaaataG
GGGTGGGCAACAAGGTATACGCgtccgtggaggaggccatccAGGCCCGT
CTGAACACGGTTGGCAAGCTACCCGGAGCACAGACCTTGGAGGCCTCTTC
GGCGGCGATTTTGATCGGTCGGGGAGCGGGGCCTGCCGCCACGCCTCATG
CGGCGGACctggtgccgggggagggcgggggggagggaggggtccgCTTT
CGCCACGACCAACGCTTGGCCGCCTCGGCGCACATTTACTTGACGGAAGA
GCAGTCCCGCGCGTTTTTGATGGCAAGTCGATGCCCGGTGTTGTTGCttc
ggggagaagagggttgGCCGGCTGCCtcccccgaggaggaaatatTGCGC
GAAGCCGCTTTGGGCCCCCGGTTGACCGTGTTGAGAGTCCCGGGGAGCCA
CCATCTGCACCTAGACGCCAGCACCTGCACTGAAGGTGCGGTGATGCGGC
CAATAGTGAGGtttttggaggaagggagggaaggggtatagaccgggggg
ggaaggaagcttggaggagacTCTTGGGAAGGCAGGTTGGGGGGTGTtga
tgagggaggatgtgTGGTGttaggaggggaggaagaggaagggtaggggg
ggggggggaggcagggagtcAGAGCGTAAAGTGAGTGCCGGGAAGTGTCT
CGGGACCTGGATctaggatggaggaggcggcgatgaagggggggggggat
tcaGGGTGTACTTTATAGACGGTTGGAGTGGATGGCTTTgacgagggatg
gggagTGGCGCGAGGTAACTTTTGCGGGGAGCTCTTGGAAGCCGTccaca
aagaggaagacgtcaATTTTGCGCGAGTCGTGTCCCGGGTGGCTTTTTTG
GGCCTCGAGAGAAAAGAGTATCCGTGTGATGT back to topCoding sequence (CDS) from alignment at CM002469.1:729837..732068+ >rna6894 ID=rna6894|Name=rna6894|organism=Nannochloropsis gaditana|type=CDS|length=2550bp|location=Sequence derived from alignment at CM002469.1:729837..732068+ (Nannochloropsis gaditana)
ATGGCGTGCTActttcctgtctccctcttccctttgatcgcctccatcac
cttTTTAACCAACCTCCCAAGTACGACATATGCGTTTCATGCTCTTCGAC
CTCCAGCTCCCCTCTCGACGACGACATCATCCCATTTACGCTCTTCCATC
CCACGAGCGCCTTCATTTCGACGCGGCATTCTGTcaattccttcctcctc
ctactcATCAACCTGCTtggaggccaccacctccctctctccttcctccc
ttccgactccttcatcccccctcccgtacgaggaggagctcctcgccctc
cctgaTGGCCTCACTGTCGCCGCCAAAGTGTGGGGCCCGGCCTCGGGCCC
CCCTGTCCTCGCCCTGCACGGATGGCTTGACAACGCCAACACATTCGACC
GACTGGCCCCTTacgtcgccgccgccggttTCCGGGTCGTCTGCATTGAC
TTCCCCGGGCACGGCAGGTCTTCGCACCGGTCCCCCGATGCCGTCTATGC
CTTCACCGACTACGTCTATTATGCGTGGGCGCTGGCCAAGGCGCTCAAGT
GGAAGAAATTTCAAATCCTCGGCCATTCTCTCGGGGCGGGCATTGGCCTT
GCCTTGGCCGGGACATACCCGGAGCTGGTCACGCGGATCGTCTGCGTAGA
AACCTTAGGAATCATCTCCAAACCCGCCGactccgcccccaccaccttga
GAGAAGCGATCAGGCAACGTGCCACCCTGGTGGAAGTCATGCGCAagtcg
gaggagagggcggaagggaagaaaggggaaataGGGGTGGGCAACAAGGT
ATACGCgtccgtggaggaggccatccAGGCCCGTCTGAACACGGTTGGCA
AGCTACCCGGAGCACAGACCTTGGAGGCCTCTTCGGCGGCGATTTTGATC
GGTCGGGGAGCGGGGCCTGCCGCCACGCCTCATGCGGCGGACctggtgcc
gggggagggcgggggggagggaggggtccgCTTTCGCCACGACCAACGCT
TGGCCGCCTCGGCGCACATTTACTTGACGGAAGAGCAGTCCCGCGCGTTT
TTGATGGCAAGTCGATGCCCGGTGTTGTTGCttcggggagaagagggttg
GCCGGCTGCCtcccccgaggaggaaatatTGCGCGAAGCCGCTTTGGGCC
CCCGGTTGACCGTGTTGAGAGTCCCGGGGAGCCACCATCTGCACCTAGAC
GCCAGCACCTGCACTGAAGGTGCGGTGATGCGGCCAATAGTGAGGttttt
ggaggaagggagggaaggggtatagATGGCGTGCTActttcctgtctccc
tcttccctttgatcgcctccatcaccttTTTAACCAACCTCCCAAGTACG
ACATATGCGTTTCATGCTCTTCGACCTCCAGCTCCCCTCTCGACGACGAC
ATCATCCCATTTACGCTCTTCCATCCCACGAGCGCCTTCATTTCGACGCG
GCATTCTGTcaattccttcctcctcctactcATCAACCTGCTtggaggcc
accacctccctctctccttcctcccttccgactccttcatcccccctccc
gtacgaggaggagctcctcgccctccctgaTGGCCTCACTGTCGCCGCCA
AAGTGTGGGGCCCGGCCTCGGGCCCCCCTGTCCTCGCCCTGCACGGATGG
CTTGACAACGCCAACACATTCGACCGACTGGCCCCTTacgtcgccgccgc
cggttTCCGGGTCGTCTGCATTGACTTCCCCGGGCACGGCAGGTCTTCGC
ACCGGTCCCCCGATGCCGTCTATGCCTTCACCGACTACGTCTATTATGCG
TGGGCGCTGGCCAAGGCGCTCAAGTGGAAGAAATTTCAAATCCTCGGCCA
TTCTCTCGGGGCGGGCATTGGCCTTGCCTTGGCCGGGACATACCCGGAGC
TGGTCACGCGGATCGTCTGCGTAGAAACCTTAGGAATCATCTCCAAACCC
GCCGactccgcccccaccaccttgaGAGAAGCGATCAGGCAACGTGCCAC
CCTGGTGGAAGTCATGCGCAagtcggaggagagggcggaagggaagaaag
gggaaataGGGGTGGGCAACAAGGTATACGCgtccgtggaggaggccatc
cAGGCCCGTCTGAACACGGTTGGCAAGCTACCCGGAGCACAGACCTTGGA
GGCCTCTTCGGCGGCGATTTTGATCGGTCGGGGAGCGGGGCCTGCCGCCA
CGCCTCATGCGGCGGACctggtgccgggggagggcgggggggagggaggg
gtccgCTTTCGCCACGACCAACGCTTGGCCGCCTCGGCGCACATTTACTT
GACGGAAGAGCAGTCCCGCGCGTTTTTGATGGCAAGTCGATGCCCGGTGT
TGTTGCttcggggagaagagggttgGCCGGCTGCCtcccccgaggaggaa
atatTGCGCGAAGCCGCTTTGGGCCCCCGGTTGACCGTGTTGAGAGTCCC
GGGGAGCCACCATCTGCACCTAGACGCCAGCACCTGCACTGAAGGTGCGG
TGATGCGGCCAATAGTGAGGtttttggaggaagggagggaaggggtatag back to top
|