rna6884, rna6884 (mRNA) Nannochloropsis gaditana

Overview
Namerna6884
Unique Namerna6884
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1423
Alignment locationCM002469.1:711902..712690 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101274g3.5037.mrna
Orig protein idgnl|cribi|Naga_101274g3.5037
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:711902..712690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101274g3gene6654Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23805.1cds6868Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6884rna6884-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6884 ID=rna6884|Name=rna6884|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp
CCATGCCGCCCGCCCAAGGATCAAGGGGGTTCAAGCGGGTATAGTCCAAA
CCGAAATGGAGGACAAACAAGACTTCAGGTTATGATTTGATTCATCTTAA
ACATATAATCTTACACGTTTCTCTTGTTTCTTTCTTGTCGCACGATTTGA
ATGAGTTTCCGGCTTGCCTGATTTGTCCTTTCTCAGAATCAAGGCGCAAC
ACGTTAAGATGTCTCCCAATGCGCTTATCAAGTGCGGTATAGACCTAAAA
CTTTTATGTCACACGACTTTCTTCTCTTTTCGGTGCAATAGGCCAGCGAC
GACGAGGGGTCGTCCCAAGCCCAGATAGTATATATCGTCACCGCCTTCTC
ACACTCAGCCTCCTCCCCTCCACGGACAGACGCAATTCTCATGCCACGCT
CTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGGCGACTTTTGGCTTT
CTCCTTCCTACACCATCCCTTGTGCCAACCCCGTCTTGTGGTCGTGGACG
TACTTTCAGGTCTCCTTTCTTTTCCTCTTCCACATTCGCCTCCTCTCCCT
TGGTCCTCCAAGCTGCTGCCGACGACAGCGACGAGAATGGACAGAAAAAG
AAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCTCCCACTCCATTGAG
CGACAATATGAGGCAGAAGCTCTTGAACGAGGCGAGAGGGCAAGGGGCAG
ACTACAACACGAGCAACGGCAACCCTATCTTGCTCATCGCGGTGGTCATC
GGTGTCTTGGTTGTCTTGGGAGGAAAAGGTTTTTTTTACTAGCAAAATGT
ACGGGTTACTTCAAGAATGAGAAGTGTGTTTTTTTTTTTCTTGATTATCG
ACATCGATTGGGCAAAACCTTTGCCATTCATCTTCATGGTGATACTGTCG
ACGATGTGCTCGAGCATTATTTACTTTGTTTAATATGCGACATTTAGGTG
GAAAATCGCACGTGTGGAACGTTGATATGAAACACACAAGGATGAGAGGA
AAGGAAATTGAAAATTAAACTTTCAGAAGGCAAAGAAACGAGAAATTTCT
CCGAGGCGCGAGTAGCAAAAAGCAGGAGCATCTGTAGGGTCCCTCCGGAT
AGCAAGGGCGAATGCGGGAGGATGGGGAAAACAACCAAGAAATACAGGCG
GAGCCCACGCGAGCCAAAAATAACTCAGAAATGGCAAGGTGGGAAGCAGG
GCATTTTCCAAGCAGGGCGGGCGGAGCGCGAGCTCCACGAGACGTGAAAA
ATGACTGATATGCACACAAAGGGTGGACGTTCGGTAGACTATACGAAGAC
TTTACAAAAGGCGTCGTTCAGGGGCAGGGCTCAAGCGAAGCCGGGGAAGA
TATGGAACGGGCGTGACTGCGAAGGCCGTGATGATGCCGAGCACAAGGAA
GACAGAGCGGATCCGAACCATGG
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protein sequence of rna6884

>rna6884-protein ID=rna6884-protein|Name=rna6884|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
HGSDPLCLPCARHHHGLRSHARSISSPAFGPHERWLGRREGGREGGREGG
MGRSGTVVYLVRRIPSLVCAKSNGCALHSAQGICVSLILPPSLSPSLILP
SRSLPQPLTPLPPPPPRPTSLEPCP
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mRNA from alignment at CM002469.1:711902..712690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6884 ID=rna6884|Name=rna6884|organism=Nannochloropsis gaditana|type=mRNA|length=789bp|location=Sequence derived from alignment at CM002469.1:711902..712690- (Nannochloropsis gaditana)
CATGGTTCGGATCCGCTCTGTCTTCCTTGTGCTCGGCATCATCACGGCCT
TCGCAGTCACGCCCGTTCCATATCTTCCCCGGCCTTTGGACCACATGAAC
GGTGGTTAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGGGGAGGTCTGGGACTGTCGTGTATCTGGTGCGGAGGATTCCTTCACT
TGTTTGTGCGAAGTCGAACGGTTGCGCTCTCCATTCTGCCCAAGGCATAT
GTGTCTCACTCATCCTCCCTCCCTCCCTCTCTCCCTCCCTCATCCTCCCC
TCTCGCTCGCTGCCACAGCCCTTGACCCCCCTGCCTCCACCTCCCCCTCG
ACCTACTTCGCTTGAGCCCTGCCCCTGAACGACGCCTTTTGTAAAGTCTT
CGTATAGTCTACCGAACGTCCACCCTTTGTGTGCATATCAGTCATTTTTC
ACGTCTCGTGGAGCTCGCGCTCCGCCCGCCCTGCTTGGAAAATGCCCTGC
TTCCCACCTTGCCATTTCTGAGTTATTTTTGGCTCGCGTGGGCTCCGCCT
GTATTTCTTGGTTGTTTTCCCCATCCTCCCGCATTCGCCCTTGCTATCTG
GAGGAAAAGCATACGACGACATAGTCAGATTGATTCAAGAAAAATGCAGG
CGTAGGACCTGAAATGTGTTGAAAATCCGCTAGTTAAGGCTCGAAAGCAA
TTAAGCTACATTGGACAAAGTAAGTTGGGTTAGGAAAAAAGCAGAAGTCA
TAAAAGCAAGCATTGATCGAAAAACGTACCCGGAGGGAC
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Coding sequence (CDS) from alignment at CM002469.1:711902..712690-

>rna6884 ID=rna6884|Name=rna6884|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at CM002469.1:711902..712690- (Nannochloropsis gaditana)
CATGGTTCGGATCCGCTCTGTCTTCCTTGTGCTCGGCATCATCACGGCCT
TCGCAGTCACGCCCGTTCCATATCTTCCCCGGCCTTTGGACCACATGAAC
GGTGGTTAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGGGGAGGTCTGGGACTGTCGTGTATCTGGTGCGGAGGATTCCTTCACT
TGTTTGTGCGAAGTCGAACGGTTGCGCTCTCCATTCTGCCCAAGGCATAT
GTGTCTCACTCATCCTCCCTCCCTCCCTCTCTCCCTCCCTCATCCTCCCC
TCTCGCTCGCTGCCACAGCCCTTGACCCCCCTGCCTCCACCTCCCCCTCG
ACCTACTTCGCTTGAGCCCTGCCCCTGA
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Synonyms
Publications