rna6881, rna6881 (mRNA) Nannochloropsis gaditana

Overview
Namerna6881
Unique Namerna6881
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length500
Alignment locationCM002469.1:710650..712691 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101274g2.5041.mrna
Orig protein idgnl|cribi|Naga_101274g2.5041
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:710650..712691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101274g2gene6653Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6881rna6881-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23809.1cds6865Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6881 ID=rna6881|Name=rna6881|organism=Nannochloropsis gaditana|type=mRNA|length=500bp
CCTCAGCCCTGGCGCTGGTGAAAATGGTGGAAGAGAAATCCCTCCCAGTG
CCCTACGCTTACATGCGCTCGGTGATCTTGGCCATACGGGCCTACCCTGG
CCTCAAGCCCGTGGTAGCCAACACCTTAGTACCTAAACTGGTGGAACGGG
AGATCTGGAGCACGCAGCCCCGTGTTTGGGAAGGTCTGATCCTGCTGCCC
AAGTACATCGGGACACGGGAGCTCACGGAGAAGATGAACGAAGCTCTTTT
TACCCTTCCCACCTCCTTGCTTCAGGACCTTCTGAAGAAAAACCCGGATA
TACGGCCCATTTTAGCGGCCTATGCCACCCGATCGCGCAAAAATGTTGGG
TTGGACGTGGCGAAACGTAAAGTATTGGGCTTGTGAGTGGCAAAACAAAA
AGAAATAAATCATGTACTTTAAAAGAGTCCTATTTTCGCGTTGCAAGACC
ATGCAAGCTTTACGAAAGCCGTGACCTTTTGACATGTCACTTCTGTCTCT
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protein sequence of rna6881

>rna6881-protein ID=rna6881-protein|Name=rna6881|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFA
SSPLVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARG
QGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY
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mRNA from alignment at CM002469.1:710650..712691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6881 ID=rna6881|Name=rna6881|organism=Nannochloropsis gaditana|type=mRNA|length=2042bp|location=Sequence derived from alignment at CM002469.1:710650..712691+ (Nannochloropsis gaditana)
CTTACTTCAACTAACAAAGAATGCGCCGTCAGCCCAGTCGATGAGATGTC
CATGAGTATCTTATATTACTTCCACAAAAATGTACGTTTTTGGTGTGAGA
AGGGCCTCTGAGCTGGAAAATATTGTCTAGGTGCTTTTTTAGGAAAAGGT
TGCGGGGAGGTTAACCATGCCGCCCGCCCAAGGATCAAGGGGGTTCAAGC
GGGTATAGTCCAAACCGAAATGGAGGACAAACAAGACTTCAGGTTATGAT
TTGATTCATCTTAAACATATAATCTTACACGTTTCTCTTGTTTCTTTCTT
GTCGCACGATTTGAATGAGTTTCCGGCTTGCCTGATTTGTCCTTTCTCAG
AATCAAGGCGCAACACGTTAAGATGTCTCCCAATGCGCTTATCAAGTGCG
GTATAGACCTAAAACTTTTATGTCACACgactttcttctcttttcggTGC
AATAGGCcagcgacgacgaggggTCGTCCCAAGCCCAGATAGTATATATC
GTCACCGCCTTCTCACactcagcctcctcccctccacggaCAGACGCAAT
TCTCATGCCACGCTCTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGG
CGACTTttggctttctccttcctacACCATCCCTTGTGCCAACCCCGTCT
TGTGGTCGTGGACGTACTTTCAggtctcctttcttttcctcttccacatt
cgcctcctctcccttggtCCTCCAAGCTGCTGCCGACGACAGCGACGAGA
ATGGACAGAAAAAGAAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCT
CCCACTCCATTGAGCGACAATATGAGGCAGAAGCTCTTGAACGAGgcgag
agggcaaggggcagACTACAACACGAGCAACGGCAACCCTATCTTGCTCA
TCGCGGTGGTCATCGGTGTCTTGGTTGTcttgggaggaaaaggtttTTTT
TACTAGCAAAATGTACGGGTTACTTCAAGAATGAGAAgtgtgtttttttt
tttcttgattATCGACATCGATTGGGCAAAACCTTTGCCATTCATCTTCA
TGGTGATACTGTCGACGATGTGCTCGAGCATTATTTACTTTGTTTAATAT
GCGACATTTAGGTGGAAAATCGCACGTGTGGAACGTTGATATGAAACACA
CAAggatgagaggaaaggaaattGAAAATTAAACTTTCAGAAGGCAAAGA
AACGAGAAATTTCTCCGAGGCGCGAGTAGCAAAAAGCAGGAGCATCTGTA
GGGTCCCTCCGGGTACGTTTTTCGATCAATGCTTGCTTTTATGACTTCTG
CTTTTTTCCTAACCCAACTTACTTTGTCCAATGTAGCTTAATTGCTTTCG
AGCCTTAACTAGCGGATTTTCAACACATTTCAGGTCCTACGCCTGCATTT
TTCTTGAATCAATCTGACTATGTCGTCGTATGCTTTTCCTCCAGATAGCA
AGGGCGAAtgcgggaggatggggaaaaCAACCAAGAAATACAGGCGGAGC
CCACGCGAGCCAAAAATAACTCAGAAATGGCAAGGTGGGAAGCAGGGCAT
TTTCCaagcagggcgggcggagcgCGAGCTCCACGAGACGTGAAAAATGA
CTGATATGCACACAAAGGGTGGACGTTCGGTAGACTATACGAAGACTTTA
CAAAAGGCGTCGTTCAGGGGCAGGGCTCAAGCGAAGtaggtcgaggggga
ggtggaggcaggggggtcAAGGGCTGTGGCAGCgagcgagaggggaggat
gagggagggagagagggagggagggaggatgagtgAGACACATATGCCTT
GGGCAGAATGGAGAGCGCAACCGTTCGACTTCGCACAAACAAGTGAAGGA
ATCCTCCGCACCAGATACACGACAGTCCCAgacctccccatccctccctc
cctccctccctccctccctccctccctccttcctaacCACCGTTCATGTG
GTCCAAAGGCCGGGGAAGATATGGAACGGGCGTGACTGCGAAGGCCGTGA
TGATGCCGAGCACAAGGAAGACAGAGCGGATCCGAACCATGG
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Coding sequence (CDS) from alignment at CM002469.1:710650..712691+

>rna6881 ID=rna6881|Name=rna6881|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002469.1:710650..712691+ (Nannochloropsis gaditana)
ATGCCACGCTCTTTCACATTCATCGCGCTTTGCCTGACTGTTTCGGCGAC
TTttggctttctccttcctacACCATCCCTTGTGCCAACCCCGTCTTGTG
GTCGTGGACGTACTTTCAggtctcctttcttttcctcttccacattcgcc
tcctctcccttggtCCTCCAAGCTGCTGCCGACGACAGCGACGAGAATGG
ACAGAAAAAGAAGATTACAGAGCCAGCTAGGCGAGAAATGCCACCTCCCA
CTCCATTGAGCGACAATATGAGGCAGAAGCTCTTGAACGAGgcgagaggg
caaggggcagACTACAACACGAGCAACGGCAACCCTATCTTGCTCATCGC
GGTGGTCATCGGTGTCTTGGTTGTcttgggaggaaaaggtttTTTTTACT
AG
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Synonyms
Publications