EWM23834.1, cds6839 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|585105099|gb|EWM23834.1| (Thioredoxin superfamily protein [Nannochloropsis gaditana]) HSP 1 Score: 490.345 bits (1261), Expect = 2.145e-175 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query: 1 MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES
Sbjct: 1 MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|553181393|ref|XP_005853559.1| (hypothetical protein NGA_0488300 [Nannochloropsis gaditana CCMP526] >gi|422295502|gb|EKU22801.1| hypothetical protein NGA_0488300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 461.455 bits (1186), Expect = 3.683e-164 Identity = 226/231 (97.84%), Postives = 228/231 (98.70%), Query Frame = 0
Query: 8 MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGV+VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAF+ GAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES
Sbjct: 1 MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVNVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFI---GAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 228
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|299115356|emb|CBN74181.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 116.701 bits (291), Expect = 4.709e-28 Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 0
Query: 41 PALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYG---NDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMA 235
PA+P + ++ G + + V+V+LDL C D AWPV+ +V + Y ++ + FPLPYH NAF AK A Y D + + F Q ++SN+ T+ MT +E ++ +W ++G+ + + + VE R FKY + + GTP I +L GLDG + DW++ L PLL++ +
Sbjct: 50 PAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTS 247
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1102291930|gb|OIT38062.1| (hypothetical protein A4A49_00107 [Nicotiana attenuata]) HSP 1 Score: 107.842 bits (268), Expect = 5.962e-25 Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 0
Query: 64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
++ F D VC D++ AWP +KQ +Q Y V H FPLPYH NAF+ ++ V N +A + ++ F Q + N+ T ++ ++ VA + A G +V++ + ++A RFSFKY ++ ++GTP F IN +P D W L PL+ Q
Sbjct: 52 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFDLSRASLVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFINGFPLPDAGSAVDYKGWRRVLDPLVHQ 221
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|698519963|ref|XP_009804846.1| (PREDICTED: uncharacterized protein LOC104250007 [Nicotiana sylvestris] >gi|1025271763|ref|XP_016493823.1| PREDICTED: uncharacterized protein LOC107813122 [Nicotiana tabacum]) HSP 1 Score: 107.842 bits (268), Expect = 7.755e-25 Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 0
Query: 64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
++ F D VC D++ AWP +KQ +Q Y V H FPLPYH NAF+ ++ V N +A + ++ F Q + N+ T ++ +V VA + A G +V++ + +++ RFSFKY ++ ++GTP F +N +P D W L PL+ Q
Sbjct: 70 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFNLSRASVVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQSTRFSFKYGCVKGVYGTPFFFVNGFPLPDAGSAVDYNGWRRVLDPLIHQ 239
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1111022111|ref|XP_019262089.1| (PREDICTED: uncharacterized protein LOC109239937 [Nicotiana attenuata]) HSP 1 Score: 107.842 bits (268), Expect = 8.893e-25 Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 0
Query: 64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
++ F D VC D++ AWP +KQ +Q Y V H FPLPYH NAF+ ++ V N +A + ++ F Q + N+ T ++ ++ VA + A G +V++ + ++A RFSFKY ++ ++GTP F IN +P D W L PL+ Q
Sbjct: 70 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFDLSRASLVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFINGFPLPDAGSAVDYKGWRRVLDPLVHQ 239
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1176075190|ref|XP_020607586.1| (uncharacterized protein LOC110046239 [Orbicella faveolata]) HSP 1 Score: 106.686 bits (265), Expect = 1.084e-24 Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 56 GDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYD-RAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLL 231
G+ S+ + + F+DL C D+++AWP +K+V Y +++ FPLPYHTNAFM A+ Y N T + +MD+ F Q + N T V ++A + +E+ V++ L +E R S+KY R++ GTP F +N + V V DW+ + PLL
Sbjct: 46 GEPSAPIHLTAFVDLTCPDSQRAWPTVKKVADMYGPETIRFTVQLFPLPYHTNAFMAAQSVYTVEAY-NSTLVINWMDVVFENQNLLYNFQTMEKNRYDVINIIAD-LGSKLDIEKSVIKDGLASSEYDEHTRISWKYGCSRTVSGTPFFFVNGVFVNQASSTWTVEDWKNLIDPLL 220
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1026103453|ref|XP_016550786.1| (PREDICTED: uncharacterized protein LOC107850633 [Capsicum annuum]) HSP 1 Score: 107.071 bits (266), Expect = 1.209e-24 Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 0
Query: 64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATG-LEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLT 232
++ FLD VC D++ +WP +K+ IQ Y + H FPLPYH NAF+ ++ V N +A R ++ F +Q + N+ + ++ +V VA + A G L V+ + ++A R SFKY ++ ++G P F +N +PG D +W L PL +
Sbjct: 51 IEAFLDPVCPDSRDSWPPLKRAIQHYGSRISLLVHPFPLPYHDNAFITSRALHVVNDL-NTSATYRLLEAFFGQQDKFYNQASFHLSKASVVDKVAKFTSNAIGNLNYAAVKGGFTDPKTDQATRTSFKYGCVKGVYGAPFFFVNGFPLPGAGSPLDYNEWRNILDPLFS 219
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|697148124|ref|XP_009628237.1| (PREDICTED: uncharacterized protein LOC104118648 [Nicotiana tomentosiformis] >gi|1025292933|ref|XP_016497944.1| PREDICTED: uncharacterized protein LOC107816711 [Nicotiana tabacum]) HSP 1 Score: 107.071 bits (266), Expect = 1.213e-24 Identity = 54/175 (30.86%), Postives = 87/175 (49.71%), Query Frame = 0
Query: 64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARE 237
++ F D VC D++ +WP +KQ +Q Y V H FPLPYH NAF+ ++ V N +A + ++ F Q + N+ T ++ +V VA + G +V++ + ++A RFSFKY ++ ++GTP F +N +P D W L PL+ Q E
Sbjct: 70 IEAFFDPVCPDSRDSWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQAEFYNKATFALSRASVVEKVARFSTNTIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFVNGFPLPDAGSALDYKGWRRVLDPLVHQQDTE 243
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1137205862|gb|OMO75481.1| (Thioredoxin-like protein [Corchorus olitorius]) HSP 1 Score: 105.531 bits (262), Expect = 3.445e-24 Identity = 66/228 (28.95%), Postives = 105/228 (46.05%), Query Frame = 0
Query: 14 VGRSSLLLASLLLAA--GHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLE-REVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
G+S+ LA L A G F RT A + P P + S + ++ F D VC D++ +WP +KQ IQ Y V H PLPYH AF ++ A+ N +A R ++ F Q + N+ T+ M+ AV + + ++ G ++ + + R SFKY+ R ++GTP F IN +P D W+ ++ PLL + ++S
Sbjct: 3 TGKSAAFLALFCLFACVGVFHRTVKAQSLP--PAKYDGFVYTNHKVDSDTIMIEAFFDPVCPDSRDSWPPLKQAIQHYGSRVSLIIHLLPLPYHDYAFATSR-ALHVVNMLNPSATFRLLESFFEDQDRFYNDQTRNMSRVAVLNEIIKFTADSVGNSYYSAIQSGFNDRKTDLKTRVSFKYSASRGVYGTPFFFINGFSLPDAGSPIDYKGWKSFIDPLLAEQGKKS 227 The following BLAST results are available for this feature:
BLAST of EWM23834.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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