EWM23928.1, cds6748 (CDS) Nannochloropsis gaditana

Overview
NameEWM23928.1
Unique Namecds6748
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:447958..447996 -
Alignment locationCM002469.1:447845..447885 -
Alignment locationCM002469.1:445752..447414 -
Alignment locationCM002469.1:445382..445699 -

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Properties
Property NameValue
Protein idEWM23928.1
ProductPDZ domain protein
Orig transcript idgnl|cribi|Naga_100082g11.9360.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:447958..447996 -
CM002469.1supercontigCM002469.1:447845..447885 -
CM002469.1supercontigCM002469.1:445752..447414 -
CM002469.1supercontigCM002469.1:445382..445699 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
[Close]
BLAST of EWM23928.1 vs. NCBI_GenBank
Match: gi|585105213|gb|EWM23928.1| (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1425.61 bits (3689), Expect = 0.000e+0
Identity = 686/686 (100.00%), Postives = 686/686 (100.00%), Query Frame = 0 
Query:    1 MPLFYTPIIFTASQTHQCRRVQTSIFSHPGQQHHRVMFIRPSSHPDASIMPPTQYVENRRFTTNHIQEQNVAAVPQHQHQYRRNSARPQECLGRHSQSVPRKPGYIPTYLPERAESKLQRPHPKTSSPAFHDPDMDNLLTLLECLRFRYMPYTKAPPGTGIHIPSKDKPDSAIFTARLVDLAISRGDQGMYSALTDLQRACFFKRDTDALRSHGQARRAREGQAFPEEDRKDGCRRDQRRTSNKKRWRKRGHGALEEGKEGLMGFQCEARPPSPALDIPEASALLLRTAAAARDTEAAACLTLLAGISVPSEHRAVSSERRAGGAGPYSSTEDDDSAASTSDQEEFEIFMSATLRANGNAGVGKGRGKELEIPRFHDDPTWYFVHCAVPWTSKVGITVVNTAVVVKGRPRQSLTVSTAAEDGSGYHAGVREGDCVVKIEGRDATSMPCSELMRTVRELIEDRRETDPTLTLEFIFARKLLKRCDSRRSKVDSPLPSNSAVAEQTSLSTSVACTGTCAINSGGHADAHDVVLKTLEGDHNCEMDTNDGGRNKDAEVGYSLDACKRSTDVSSKSINGCSDTKDTGMDRVNLYWRSREASDQTSSTAPCQRLVMVHAHRSLGTSTRRMVEANGIEPTQVRFPLPVSLEHLQRSRLARPEALDLCWSAGCPLVVTDQRLAFVWWALAKDM 686
            MPLFYTPIIFTASQTHQCRRVQTSIFSHPGQQHHRVMFIRPSSHPDASIMPPTQYVENRRFTTNHIQEQNVAAVPQHQHQYRRNSARPQECLGRHSQSVPRKPGYIPTYLPERAESKLQRPHPKTSSPAFHDPDMDNLLTLLECLRFRYMPYTKAPPGTGIHIPSKDKPDSAIFTARLVDLAISRGDQGMYSALTDLQRACFFKRDTDALRSHGQARRAREGQAFPEEDRKDGCRRDQRRTSNKKRWRKRGHGALEEGKEGLMGFQCEARPPSPALDIPEASALLLRTAAAARDTEAAACLTLLAGISVPSEHRAVSSERRAGGAGPYSSTEDDDSAASTSDQEEFEIFMSATLRANGNAGVGKGRGKELEIPRFHDDPTWYFVHCAVPWTSKVGITVVNTAVVVKGRPRQSLTVSTAAEDGSGYHAGVREGDCVVKIEGRDATSMPCSELMRTVRELIEDRRETDPTLTLEFIFARKLLKRCDSRRSKVDSPLPSNSAVAEQTSLSTSVACTGTCAINSGGHADAHDVVLKTLEGDHNCEMDTNDGGRNKDAEVGYSLDACKRSTDVSSKSINGCSDTKDTGMDRVNLYWRSREASDQTSSTAPCQRLVMVHAHRSLGTSTRRMVEANGIEPTQVRFPLPVSLEHLQRSRLARPEALDLCWSAGCPLVVTDQRLAFVWWALAKDM
Sbjct:    1 MPLFYTPIIFTASQTHQCRRVQTSIFSHPGQQHHRVMFIRPSSHPDASIMPPTQYVENRRFTTNHIQEQNVAAVPQHQHQYRRNSARPQECLGRHSQSVPRKPGYIPTYLPERAESKLQRPHPKTSSPAFHDPDMDNLLTLLECLRFRYMPYTKAPPGTGIHIPSKDKPDSAIFTARLVDLAISRGDQGMYSALTDLQRACFFKRDTDALRSHGQARRAREGQAFPEEDRKDGCRRDQRRTSNKKRWRKRGHGALEEGKEGLMGFQCEARPPSPALDIPEASALLLRTAAAARDTEAAACLTLLAGISVPSEHRAVSSERRAGGAGPYSSTEDDDSAASTSDQEEFEIFMSATLRANGNAGVGKGRGKELEIPRFHDDPTWYFVHCAVPWTSKVGITVVNTAVVVKGRPRQSLTVSTAAEDGSGYHAGVREGDCVVKIEGRDATSMPCSELMRTVRELIEDRRETDPTLTLEFIFARKLLKRCDSRRSKVDSPLPSNSAVAEQTSLSTSVACTGTCAINSGGHADAHDVVLKTLEGDHNCEMDTNDGGRNKDAEVGYSLDACKRSTDVSSKSINGCSDTKDTGMDRVNLYWRSREASDQTSSTAPCQRLVMVHAHRSLGTSTRRMVEANGIEPTQVRFPLPVSLEHLQRSRLARPEALDLCWSAGCPLVVTDQRLAFVWWALAKDM 686
The following BLAST results are available for this feature:
BLAST of EWM23928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105213|gb|EWM23928.1|0.000e+0100.00PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6764rna6764Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications